hg19_v2_chrX_-_153707246_153707306	0.200376	PAX1_PAX9	ENST00000407062.1|LAGE3|ENSG00000196976.5|L antigen family, member 3
hg19_v2_chrX_-_153707545_153707596	0.185013	PAX1_PAX9	ENST00000357360.4|LAGE3|ENSG00000196976.5|L antigen family, member 3
hg19_v2_chr5_-_133747551_133747585	0.179598	PAX1_PAX9	ENST00000395009.3|CDKN2AIPNL|ENSG00000237190.3|CDKN2A interacting protein N-terminal like
hg19_v2_chr18_-_47814032_47814079	0.104043	PAX1_PAX9	ENST00000589548.1|CXXC1|ENSG00000154832.10|CXXC finger protein 1 	ENST00000591474.1|CXXC1|ENSG00000154832.10|CXXC finger protein 1
hg19_v2_chr14_-_69261310_69261453	0.0990653	PAX1_PAX9	ENST00000336440.3|ZFP36L1|ENSG00000185650.8|ZFP36 ring finger protein-like 1
hg19_v2_chr8_-_23282797_23282804	0.0973228	PAX1_PAX9	ENST00000524144.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chr11_-_67397371_67397416	0.0950717	PAX1_PAX9	ENST00000376693.2|NUDT8|ENSG00000167799.5|nudix (nucleoside diphosphate linked moiety X)-type motif 8 	ENST00000301490.4|NUDT8|ENSG00000167799.5|nudix (nucleoside diphosphate linked moiety X)-type motif 8
hg19_v2_chr8_-_23282820_23282846	0.0780108	PAX1_PAX9	ENST00000520871.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chr5_+_55354822_55354877	0.0755648	PAX1_PAX9	ENST00000511861.1|CTD-2227I18.1|ENSG00000249236.1|CTD-2227I18.1
hg19_v2_chr16_+_67197288_67197362	0.0710997	PAX1_PAX9	ENST00000264009.8|HSF4|ENSG00000102878.11|heat shock transcription factor 4 	ENST00000421453.1|HSF4|ENSG00000102878.11|heat shock transcription factor 4
hg19_v2_chr5_+_133842243_133842269	0.0627977	PAX1_PAX9	ENST00000515627.2|AC005355.2|ENSG00000251169.2|AC005355.2
hg19_v2_chr18_-_47813940_47814021	0.060991	PAX1_PAX9	ENST00000586837.1|CXXC1|ENSG00000154832.10|CXXC finger protein 1 	ENST00000412036.2|CXXC1|ENSG00000154832.10|CXXC finger protein 1 	ENST00000589940.1|CXXC1|ENSG00000154832.10|CXXC finger protein 1
hg19_v2_chr22_+_39745930_39746012	0.0547196	PAX1_PAX9	ENST00000318801.4|SYNGR1|ENSG00000100321.10|synaptogyrin 1 	ENST00000216155.7|SYNGR1|ENSG00000100321.10|synaptogyrin 1 	ENST00000406293.3|SYNGR1|ENSG00000100321.10|synaptogyrin 1 	ENST00000328933.5|SYNGR1|ENSG00000100321.10|synaptogyrin 1
hg19_v2_chr7_-_112758589_112758619	0.04913	PAX1_PAX9	ENST00000413744.1|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998 	ENST00000439551.1|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998 	ENST00000441359.1|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998
hg19_v2_chr17_-_7137582_7137637	0.0475676	PAX1_PAX9	ENST00000575756.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2 	ENST00000575458.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr5_-_133747589_133747603	0.0459479	PAX1_PAX9	ENST00000458198.2|CDKN2AIPNL|ENSG00000237190.3|CDKN2A interacting protein N-terminal like
hg19_v2_chr9_-_131418944_131419066	0.0386737	PAX1_PAX9	ENST00000419989.1|WDR34|ENSG00000119333.7|WD repeat domain 34 	ENST00000451652.1|WDR34|ENSG00000119333.7|WD repeat domain 34 	ENST00000372715.2|WDR34|ENSG00000119333.7|WD repeat domain 34
hg19_v2_chr6_-_170893268_170893314	0.0358943	PAX1_PAX9	ENST00000538195.1|PDCD2|ENSG00000071994.6|programmed cell death 2
hg19_v2_chr12_-_122658746_122658769	0.0338218	PAX1_PAX9	ENST00000377035.1|IL31|ENSG00000204671.1|interleukin 31
hg19_v2_chr7_-_112758665_112758672	0.0332874	PAX1_PAX9	ENST00000397764.3|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998
hg19_v2_chr17_+_39969183_39969265	0.0287875	PAX1_PAX9	ENST00000321562.4|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr17_-_39968855_39968880	0.0286006	PAX1_PAX9	ENST00000355468.3|LEPREL4|ENSG00000141696.8|leprecan-like 4 	ENST00000590496.1|LEPREL4|ENSG00000141696.8|leprecan-like 4
hg19_v2_chr15_+_63569785_63569824	0.0242539	PAX1_PAX9	ENST00000380343.4|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit 	ENST00000560353.1|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit
hg19_v2_chr14_+_39703112_39703135	0.0242285	PAX1_PAX9	ENST00000555143.1|MIA2|ENSG00000150526.7|melanoma inhibitory activity 2 	ENST00000280082.3|MIA2|ENSG00000150526.7|melanoma inhibitory activity 2
hg19_v2_chr8_-_121824374_121824391	0.024207	PAX1_PAX9	ENST00000517992.1|SNTB1|ENSG00000172164.9|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
hg19_v2_chr19_-_18995029_18995050	0.0240771	PAX1_PAX9	ENST00000596048.1|CERS1|ENSG00000223802.3|ceramide synthase 1
hg19_v2_chr17_-_39968406_39968451	0.0232869	PAX1_PAX9	ENST00000393928.1|LEPREL4|ENSG00000141696.8|leprecan-like 4
hg19_v2_chr7_-_19157248_19157295	0.0232573	PAX1_PAX9	ENST00000242261.5|TWIST1|ENSG00000122691.8|twist family bHLH transcription factor 1
hg19_v2_chr11_+_61522844_61522875	0.0229412	PAX1_PAX9	ENST00000265460.5|MYRF|ENSG00000124920.9|myelin regulatory factor
hg19_v2_chr6_+_159291090_159291223	0.0187541	PAX1_PAX9	ENST00000367073.4|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99 	ENST00000608817.1|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99
hg19_v2_chr6_+_159290917_159290971	0.018409	PAX1_PAX9	ENST00000367072.1|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99
hg19_v2_chr9_-_104249400_104249512	0.0182786	PAX1_PAX9	ENST00000374848.3|TMEM246|ENSG00000165152.4|transmembrane protein 246
hg19_v2_chr2_-_207630033_207630061	0.0170213	PAX1_PAX9	ENST00000449792.1|MDH1B|ENSG00000138400.8|malate dehydrogenase 1B, NAD (soluble)
hg19_v2_chr10_-_99393208_99393237	0.0159653	PAX1_PAX9	ENST00000307450.6|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr19_-_40791302_40791443	0.015889	PAX1_PAX9	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr19_-_39104556_39104568	0.0147029	PAX1_PAX9	ENST00000423454.2|MAP4K1|ENSG00000104814.8|mitogen-activated protein kinase kinase kinase kinase 1
hg19_v2_chr20_-_17641097_17641152	0.0146313	PAX1_PAX9	ENST00000246043.4|RRBP1|ENSG00000125844.11|ribosome binding protein 1
hg19_v2_chr6_-_170893669_170893740	0.0140049	PAX1_PAX9	ENST00000392090.2|PDCD2|ENSG00000071994.6|programmed cell death 2 	ENST00000542896.1|PDCD2|ENSG00000071994.6|programmed cell death 2 	ENST00000453163.2|PDCD2|ENSG00000071994.6|programmed cell death 2 	ENST00000537445.1|PDCD2|ENSG00000071994.6|programmed cell death 2
hg19_v2_chr17_+_39968926_39969042	0.0129339	PAX1_PAX9	ENST00000585664.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000585922.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000429461.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr18_-_47018769_47018858	0.0120919	PAX1_PAX9	ENST00000583637.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000578528.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000578532.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000580387.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000579248.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000581373.1|RPL17|ENSG00000265681.2|ribosomal protein L17
hg19_v2_chr9_+_6716478_6716551	0.0113176	PAX1_PAX9	ENST00000452643.1|RP11-390F4.3|ENSG00000225489.2|RP11-390F4.3
hg19_v2_chr1_+_26758790_26758847	0.0108792	PAX1_PAX9	ENST00000427245.2|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000525682.2|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000236342.7|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000526219.1|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000374185.3|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000360009.2|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase
hg19_v2_chr1_+_26759295_26759382	0.00885171	PAX1_PAX9	ENST00000430232.1|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase
hg19_v2_chr17_+_76374714_76374759	0.00882563	PAX1_PAX9	ENST00000262764.6|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000589689.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000329897.7|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000592043.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000587356.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1
hg19_v2_chr22_-_41940404_41940610	0.00862134	PAX1_PAX9	ENST00000355209.4|POLR3H|ENSG00000100413.12|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 	ENST00000337566.5|POLR3H|ENSG00000100413.12|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 	ENST00000396504.2|POLR3H|ENSG00000100413.12|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 	ENST00000407461.1|POLR3H|ENSG00000100413.12|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)
hg19_v2_chr10_-_99393242_99393344	0.00844508	PAX1_PAX9	ENST00000370635.3|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000478953.1|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000335628.3|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr19_-_40791211_40791269	0.00838194	PAX1_PAX9	ENST00000579047.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr7_-_22234381_22234430	0.00836775	PAX1_PAX9	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr10_-_43904608_43904640	0.00770495	PAX1_PAX9	ENST00000337970.3|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chrX_+_148622513_148622612	0.00723463	PAX1_PAX9	ENST00000393985.3|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A 	ENST00000423421.1|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A 	ENST00000423540.2|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A 	ENST00000434353.2|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A 	ENST00000514208.1|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A
hg19_v2_chr17_-_3461092_3461126	0.00642719	PAX1_PAX9	ENST00000301365.4|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3 	ENST00000572519.1|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3
hg19_v2_chr2_+_234160217_234160335	0.00603687	PAX1_PAX9	ENST00000392017.4|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000347464.5|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000444735.1|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000373525.5|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000419681.1|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae)
hg19_v2_chr9_+_33750667_33750819	0.00576538	PAX1_PAX9	ENST00000457896.1|PRSS3|ENSG00000010438.12|protease, serine, 3 	ENST00000342836.4|PRSS3|ENSG00000010438.12|protease, serine, 3 	ENST00000429677.3|PRSS3|ENSG00000010438.12|protease, serine, 3
hg19_v2_chr19_-_409134_409156	0.0056582	PAX1_PAX9	ENST00000332235.6|C2CD4C|ENSG00000183186.6|C2 calcium-dependent domain containing 4C
hg19_v2_chr11_+_63870660_63870660	0.00550957	PAX1_PAX9	ENST00000246841.3|FLRT1|ENSG00000126500.3|fibronectin leucine rich transmembrane protein 1
hg19_v2_chr7_-_2349579_2349594	0.00550892	PAX1_PAX9	ENST00000435060.1|SNX8|ENSG00000106266.4|sorting nexin 8
hg19_v2_chr1_+_45140360_45140399	0.00429151	PAX1_PAX9	ENST00000418644.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000458657.2|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000441519.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000535358.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000445071.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228
hg19_v2_chr3_+_127771212_127771316	0.0030555	PAX1_PAX9	ENST00000243253.3|SEC61A1|ENSG00000058262.5|Sec61 alpha 1 subunit (S. cerevisiae) 	ENST00000481210.1|SEC61A1|ENSG00000058262.5|Sec61 alpha 1 subunit (S. cerevisiae)
hg19_v2_chr15_+_63569731_63569783	0.00204988	PAX1_PAX9	ENST00000261879.5|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit
hg19_v2_chr6_-_137366163_137366298	0.00174374	PAX1_PAX9	ENST00000367748.1|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha
hg19_v2_chr17_+_15848231_15848231	0.00153561	PAX1_PAX9	ENST00000304222.2|ADORA2B|ENSG00000170425.3|adenosine A2b receptor
hg19_v2_chr9_+_33795533_33795562	0.00125289	PAX1_PAX9	ENST00000379405.3|PRSS3|ENSG00000010438.12|protease, serine, 3
