hg19_v2_chr12_+_9102632_9102708	0.215338	MSX2	ENST00000539240.1|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1
hg19_v2_chr12_-_9102224_9102331	0.212739	MSX2	ENST00000543845.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent) 	ENST00000544245.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr5_-_31532238_31532303	0.159817	MSX2	ENST00000507438.1|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III
hg19_v2_chr7_-_100183742_100183781	0.148621	MSX2	ENST00000310300.6|LRCH4|ENSG00000077454.11|leucine-rich repeats and calponin homology (CH) domain containing 4
hg19_v2_chr14_-_88200641_88200643	0.144909	MSX2	ENST00000556168.1|RP11-1152H15.1|ENSG00000258807.1|RP11-1152H15.1
hg19_v2_chr16_+_53133070_53133081	0.126756	MSX2	ENST00000565832.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr22_+_46476192_46476222	0.119298	MSX2	ENST00000443490.1|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr20_-_50418947_50418964	0.109779	MSX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr11_+_17298342_17298378	0.0953266	MSX2	ENST00000530964.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr8_-_1922789_1922822	0.0951364	MSX2	ENST00000521498.1|RP11-439C15.4|ENSG00000253764.1|RP11-439C15.4
hg19_v2_chr1_+_27158505_27158520	0.0949516	MSX2	ENST00000534643.1|ZDHHC18|ENSG00000204160.7|zinc finger, DHHC-type containing 18
hg19_v2_chr1_-_158173659_158173674	0.0931959	MSX2	ENST00000415019.1|RP11-404O13.5|ENSG00000176320.2|RP11-404O13.5
hg19_v2_chr12_-_10022735_10022735	0.0899785	MSX2	ENST00000228438.2|CLEC2B|ENSG00000110852.4|C-type lectin domain family 2, member B
hg19_v2_chr11_+_101918153_101918198	0.0890901	MSX2	ENST00000434758.2|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70 	ENST00000526781.1|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70 	ENST00000534360.1|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70
hg19_v2_chr3_-_120400960_120401030	0.0875122	MSX2	ENST00000476082.2|HGD|ENSG00000113924.7|homogentisate 1,2-dioxygenase
hg19_v2_chr14_-_51027838_51027851	0.083947	MSX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr10_+_85954377_85954438	0.0837113	MSX2	ENST00000332904.3|CDHR1|ENSG00000148600.10|cadherin-related family member 1 	ENST00000372117.3|CDHR1|ENSG00000148600.10|cadherin-related family member 1
hg19_v2_chr20_-_50418972_50419029	0.0788758	MSX2	ENST00000395997.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr1_+_11714914_11714976	0.0770407	MSX2	ENST00000425796.1|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000376770.1|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000376768.1|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000251547.5|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000376760.1|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000376762.4|FBXO44|ENSG00000132879.9|F-box protein 44
hg19_v2_chr19_+_11485333_11485367	0.0674253	MSX2	ENST00000312423.2|SWSAP1|ENSG00000173928.2|SWIM-type zinc finger 7 associated protein 1
hg19_v2_chrX_+_70752945_70752973	0.0629856	MSX2	ENST00000373701.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr3_-_112127981_112128034	0.0617146	MSX2	ENST00000486726.2|RP11-231E6.1|ENSG00000243081.2|RP11-231E6.1
hg19_v2_chr7_+_130794878_130794899	0.0609611	MSX2	ENST00000416992.2|MKLN1|ENSG00000128585.13|muskelin 1, intracellular mediator containing kelch motifs
hg19_v2_chr16_-_29934558_29934641	0.0588353	MSX2	ENST00000568995.1|KCTD13|ENSG00000174943.5|potassium channel tetramerization domain containing 13 	ENST00000566413.1|KCTD13|ENSG00000174943.5|potassium channel tetramerization domain containing 13
hg19_v2_chr6_-_111927062_111927125	0.0536628	MSX2	ENST00000359831.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr20_-_50419055_50419066	0.0490659	MSX2	ENST00000217086.4|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr19_+_42817450_42817493	0.048388	MSX2	ENST00000301204.3|TMEM145|ENSG00000167619.7|transmembrane protein 145
hg19_v2_chr12_+_28410128_28410133	0.0474943	MSX2	ENST00000381259.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91 	ENST00000381256.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr5_+_66254698_66254885	0.0467703	MSX2	ENST00000405643.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000407621.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000432426.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr1_+_81001398_81001440	0.0463774	MSX2	ENST00000418041.1|RP5-887A10.1|ENSG00000234184.1|RP5-887A10.1	ENST00000443104.1|RP5-887A10.1|ENSG00000234184.1|RP5-887A10.1
hg19_v2_chr1_-_36916066_36916092	0.0446837	MSX2	ENST00000315643.9|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr15_-_98417780_98417780	0.0445152	MSX2	ENST00000503874.3|LINC00923|ENSG00000251209.3|long intergenic non-protein coding RNA 923
hg19_v2_chr3_-_141747950_141748004	0.0441019	MSX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr7_+_130794846_130794873	0.0431744	MSX2	ENST00000421797.2|MKLN1|ENSG00000128585.13|muskelin 1, intracellular mediator containing kelch motifs
hg19_v2_chr17_-_12920907_12920987	0.0415704	MSX2	ENST00000609757.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000581499.2|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000580504.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2
hg19_v2_chr7_+_91570165_91570197	0.0413446	MSX2	ENST00000356239.3|AKAP9|ENSG00000127914.12|A kinase (PRKA) anchor protein 9 	ENST00000359028.2|AKAP9|ENSG00000127914.12|A kinase (PRKA) anchor protein 9 	ENST00000358100.2|AKAP9|ENSG00000127914.12|A kinase (PRKA) anchor protein 9
hg19_v2_chr4_-_171012844_171012850	0.0404676	MSX2	ENST00000502392.1|AADAT|ENSG00000109576.9|aminoadipate aminotransferase
hg19_v2_chr9_+_80912059_80912081	0.0381823	MSX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chr11_+_17298522_17298531	0.0350646	MSX2	ENST00000529313.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr2_-_27603582_27603657	0.0350412	MSX2	ENST00000323703.6|ZNF513|ENSG00000163795.9|zinc finger protein 513 	ENST00000436006.1|ZNF513|ENSG00000163795.9|zinc finger protein 513
hg19_v2_chr3_+_186353756_186353761	0.0342634	MSX2	ENST00000431018.1|FETUB|ENSG00000090512.7|fetuin B 	ENST00000450521.1|FETUB|ENSG00000090512.7|fetuin B 	ENST00000539949.1|FETUB|ENSG00000090512.7|fetuin B
hg19_v2_chr7_+_99717230_99717321	0.0336811	MSX2	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr9_-_5339873_5339881	0.0325943	MSX2	ENST00000223862.1|RLN1|ENSG00000107018.6|relaxin 1 	ENST00000223858.4|RLN1|ENSG00000107018.6|relaxin 1
hg19_v2_chr16_+_69345243_69345312	0.0324296	MSX2	ENST00000254950.11|VPS4A|ENSG00000132612.14|vacuolar protein sorting 4 homolog A (S. cerevisiae)
hg19_v2_chr12_-_95397442_95397546	0.0323275	MSX2	ENST00000547157.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000547986.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000327772.2|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
hg19_v2_chr8_-_117886563_117886605	0.0312879	MSX2	ENST00000519837.1|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe) 	ENST00000522699.1|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr5_-_148758839_148758861	0.0299462	MSX2	ENST00000261796.3|IL17B|ENSG00000127743.5|interleukin 17B
hg19_v2_chr1_-_197115818_197115829	0.0299411	MSX2	ENST00000367409.4|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 	ENST00000294732.7|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
hg19_v2_chr7_-_99716940_99716943	0.0280488	MSX2	ENST00000440225.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr8_+_9413410_9413451	0.0278259	MSX2	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr1_+_211813019_211813150	0.0271197	MSX2	ENST00000430123.1|RP11-354K1.1|ENSG00000227764.1|RP11-354K1.1
hg19_v2_chr1_-_21625486_21625505	0.0265783	MSX2	ENST00000481130.2|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chrX_+_70752917_70752933	0.0261428	MSX2	ENST00000373719.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr1_+_202317815_202317854	0.025276	MSX2	ENST00000608999.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000336894.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000480184.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr1_-_23694794_23694879	0.0234414	MSX2	ENST00000374608.3|ZNF436|ENSG00000125945.10|zinc finger protein 436
hg19_v2_chr22_+_17956618_17956637	0.0234068	MSX2	ENST00000262608.8|CECR2|ENSG00000099954.14|cat eye syndrome chromosome region, candidate 2
hg19_v2_chr19_+_46236509_46236509	0.0232123	MSX2	ENST00000457052.2|AC074212.3|ENSG00000237452.2|Uncharacterized protein
hg19_v2_chr20_+_49126881_49126936	0.0231577	MSX2	ENST00000371621.3|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1 	ENST00000541713.1|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1
hg19_v2_chr17_+_67759813_67759832	0.0229076	MSX2	ENST00000587241.1|AC003051.1|ENSG00000227517.2|AC003051.1
hg19_v2_chr20_+_56964253_56964369	0.0212413	MSX2	ENST00000395802.3|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chrX_-_48931648_48931730	0.0212201	MSX2	ENST00000376386.3|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2 	ENST00000376390.4|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2
hg19_v2_chr5_+_150639360_150639450	0.0211944	MSX2	ENST00000523004.1|GM2A|ENSG00000196743.4|GM2 ganglioside activator
hg19_v2_chr7_+_100210133_100210214	0.0210796	MSX2	ENST00000393950.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000424091.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr3_-_11685345_11685432	0.0210421	MSX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr17_+_44679808_44679808	0.0209792	MSX2	ENST00000571172.1|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr12_+_64798826_64798936	0.0201053	MSX2	ENST00000540203.1|XPOT|ENSG00000184575.7|exportin, tRNA
hg19_v2_chr1_-_151965048_151965062	0.0200407	MSX2	ENST00000368809.1|S100A10|ENSG00000197747.4|S100 calcium binding protein A10
hg19_v2_chr15_-_37393406_37393528	0.0194845	MSX2	ENST00000338564.5|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000558313.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000340545.5|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr5_+_140557371_140557371	0.0194482	MSX2	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr9_+_124329336_124329406	0.0193511	MSX2	ENST00000394340.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000436835.1|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000259371.2|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr14_+_65381079_65381212	0.0190559	MSX2	ENST00000549115.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000607599.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000548752.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000359118.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000552002.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000551947.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000551093.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000542227.1|FNTB|ENSG00000257365.3|farnesyltransferase, CAAX box, beta 	ENST00000447296.2|FNTB|ENSG00000257365.3|farnesyltransferase, CAAX box, beta 	ENST00000549987.1|CHURC1-FNTB|ENSG00000125954.8|CHURC1-FNTB readthrough
hg19_v2_chr11_+_108535849_108535863	0.018739	MSX2	ENST00000526794.1|DDX10|ENSG00000178105.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
hg19_v2_chr17_+_74261277_74261292	0.0183578	MSX2	ENST00000327490.6|UBALD2|ENSG00000185262.7|UBA-like domain containing 2
hg19_v2_chr8_-_12612962_12613049	0.0182297	MSX2	ENST00000398246.3|LONRF1|ENSG00000154359.8|LON peptidase N-terminal domain and ring finger 1
hg19_v2_chr19_-_10121144_10121155	0.0178253	MSX2	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr5_-_31532160_31532221	0.0174613	MSX2	ENST00000511367.2|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III 	ENST00000513349.1|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III
hg19_v2_chr10_-_105110831_105110885	0.0171392	MSX2	ENST00000337211.4|PCGF6|ENSG00000156374.10|polycomb group ring finger 6
hg19_v2_chr8_+_38831683_38831702	0.0168003	MSX2	ENST00000302495.4|HTRA4|ENSG00000169495.4|HtrA serine peptidase 4
hg19_v2_chr6_-_111927449_111927482	0.016419	MSX2	ENST00000368761.5|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000392556.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000340026.6|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr11_+_17298297_17298341	0.015226	MSX2	ENST00000529010.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr7_+_100209725_100209824	0.0150257	MSX2	ENST00000223054.4|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr10_-_56561022_56561051	0.0149084	MSX2	ENST00000373965.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000414778.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395438.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000409834.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395445.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395446.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395442.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395440.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395432.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000361849.3|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395433.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000320301.6|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395430.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000437009.1|PCDH15|ENSG00000150275.13|protocadherin-related 15
hg19_v2_chr19_+_41869894_41869961	0.0145706	MSX2	ENST00000413014.2|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr21_-_22175341_22175434	0.0142915	MSX2	ENST00000416768.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000452561.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000419299.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000437238.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320
hg19_v2_chr14_+_32798462_32798539	0.0140495	MSX2	ENST00000280979.4|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr14_-_23504432_23504448	0.0138277	MSX2	ENST00000425762.2|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr1_+_44115814_44115849	0.0121656	MSX2	ENST00000372396.3|KDM4A|ENSG00000066135.8|lysine (K)-specific demethylase 4A
hg19_v2_chr17_-_38956205_38956214	0.0118707	MSX2	ENST00000306658.7|KRT28|ENSG00000173908.8|keratin 28
hg19_v2_chr17_-_43045439_43045439	0.0117082	MSX2	ENST00000253407.3|C1QL1|ENSG00000131094.3|complement component 1, q subcomponent-like 1
hg19_v2_chr1_-_36916011_36916057	0.0115009	MSX2	ENST00000356637.5|OSCP1|ENSG00000116885.14|organic solute carrier partner 1 	ENST00000354267.3|OSCP1|ENSG00000116885.14|organic solute carrier partner 1 	ENST00000235532.5|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr6_+_25652432_25652485	0.0114034	MSX2	ENST00000377961.2|SCGN|ENSG00000079689.9|secretagogin, EF-hand calcium binding protein
hg19_v2_chr1_-_8877692_8877732	0.0113035	MSX2	ENST00000400908.2|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr3_-_151034734_151034745	0.0112231	MSX2	ENST00000260843.4|GPR87|ENSG00000138271.4|G protein-coupled receptor 87
hg19_v2_chr20_-_54967187_54967393	0.00955739	MSX2	ENST00000422322.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000371356.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000451915.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000347343.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395911.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395907.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000441357.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000456249.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000420474.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395909.4|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395914.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000312783.6|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395915.3|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395913.3|AURKA|ENSG00000087586.13|aurora kinase A
hg19_v2_chr7_-_99716952_99717021	0.00949271	MSX2	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr6_+_34204642_34204664	0.00938917	MSX2	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr1_-_68698222_68698266	0.00902439	MSX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr22_-_30960876_30960901	0.00889697	MSX2	ENST00000401975.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000428682.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000423299.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr8_-_117886612_117886673	0.00872702	MSX2	ENST00000520992.1|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr7_+_134331550_134331593	0.00846547	MSX2	ENST00000344924.3|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000418040.1|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000393132.2|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase
hg19_v2_chr19_+_4007644_4007699	0.00789562	MSX2	ENST00000262971.2|PIAS4|ENSG00000105229.2|protein inhibitor of activated STAT, 4
hg19_v2_chr5_+_140797296_140797427	0.00774261	MSX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr2_+_187371440_187371567	0.00621378	MSX2	ENST00000445547.1|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr7_-_56174161_56174269	0.00612656	MSX2	ENST00000395422.3|CHCHD2|ENSG00000106153.12|coiled-coil-helix-coiled-coil-helix domain containing 2
hg19_v2_chr12_-_9102549_9102591	0.0059264	MSX2	ENST00000000412.3|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr17_+_12569306_12569344	0.00579313	MSX2	ENST00000425538.1|MYOCD|ENSG00000141052.13|myocardin
hg19_v2_chr12_-_120315074_120315097	0.00555707	MSX2	ENST00000261833.7|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21) 	ENST00000392521.2|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21)
hg19_v2_chr11_+_33061543_33061585	0.00489001	MSX2	ENST00000432887.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000528898.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000531632.2|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1
hg19_v2_chr6_-_167040731_167040745	0.00477883	MSX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr2_-_73460334_73460405	0.00472661	MSX2	ENST00000258083.2|PRADC1|ENSG00000135617.3|protease-associated domain containing 1
hg19_v2_chr9_+_34646624_34646649	0.00468002	MSX2	ENST00000450095.2|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase 	ENST00000556278.1|GALT|ENSG00000258728.1|Uncharacterized protein
hg19_v2_chr17_-_38574169_38574202	0.00434193	MSX2	ENST00000423485.1|TOP2A|ENSG00000131747.10|topoisomerase (DNA) II alpha 170kDa
hg19_v2_chr4_-_69434245_69434245	0.00404399	MSX2	ENST00000317746.2|UGT2B17|ENSG00000197888.2|UDP glucuronosyltransferase 2 family, polypeptide B17
hg19_v2_chr11_-_102323740_102323780	0.00393627	MSX2	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr3_-_114866084_114866118	0.00385247	MSX2	ENST00000357258.3|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr4_-_109684120_109684217	0.00356211	MSX2	ENST00000512646.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000411864.2|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000296486.3|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000510706.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase
hg19_v2_chr5_+_95997885_95997914	0.00347356	MSX2	ENST00000511097.2|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr5_+_162864575_162864620	0.00309408	MSX2	ENST00000512163.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000393929.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000340828.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511683.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510097.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511490.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510664.1|CCNG1|ENSG00000113328.14|cyclin G1
hg19_v2_chr2_-_98280383_98280570	0.00303684	MSX2	ENST00000289228.5|ACTR1B|ENSG00000115073.6|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)
hg19_v2_chr13_-_103389159_103389159	0.0029091	MSX2	ENST00000322527.2|CCDC168|ENSG00000175820.2|coiled-coil domain containing 168
hg19_v2_chr14_-_23504337_23504369	0.00230437	MSX2	ENST00000361611.6|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr1_-_151431674_151431691	0.00105035	MSX2	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr17_+_42264556_42264649	0.000992135	MSX2	ENST00000319511.6|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2 	ENST00000589785.1|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2 	ENST00000592825.1|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2 	ENST00000589184.1|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2
