hg19_v2_chr6_+_28092338_28092412	0.234318	MSX1	ENST00000340487.4|ZSCAN16|ENSG00000196812.4|zinc finger and SCAN domain containing 16
hg19_v2_chr4_+_9446156_9446260	0.221217	MSX1	ENST00000334879.1|DEFB131|ENSG00000186146.1|defensin, beta 131
hg19_v2_chr7_+_106415457_106415522	0.206748	MSX1	ENST00000490162.2|RP5-884M6.1|ENSG00000228742.5|RP5-884M6.1	ENST00000470135.1|RP5-884M6.1|ENSG00000228742.5|RP5-884M6.1
hg19_v2_chr19_-_53662257_53662319	0.188602	MSX1	ENST00000599096.1|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000334197.7|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000597183.1|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000601804.1|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000601469.2|ZNF347|ENSG00000197937.8|zinc finger protein 347 	ENST00000452676.2|ZNF347|ENSG00000197937.8|zinc finger protein 347
hg19_v2_chr5_-_119669160_119669197	0.152612	MSX1	ENST00000514240.1|CTC-552D5.1|ENSG00000251293.1|CTC-552D5.1
hg19_v2_chr2_+_7073174_7073194	0.131075	MSX1	ENST00000416587.1|RNF144A|ENSG00000151692.10|ring finger protein 144A
hg19_v2_chr5_-_138739739_138739793	0.120448	MSX1	ENST00000514983.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000507779.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000451821.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000450845.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000509959.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000302091.5|SPATA24|ENSG00000170469.6|spermatogenesis associated 24
hg19_v2_chr8_-_25281747_25281779	0.110976	MSX1	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chr14_+_52327350_52327371	0.108975	MSX1	ENST00000555472.1|GNG2|ENSG00000186469.4|guanine nucleotide binding protein (G protein), gamma 2 	ENST00000556766.1|GNG2|ENSG00000186469.4|guanine nucleotide binding protein (G protein), gamma 2
hg19_v2_chr16_+_53412368_53412387	0.105386	MSX1	ENST00000565189.1|RP11-44F14.2|ENSG00000261804.1|RP11-44F14.2
hg19_v2_chr12_-_52604607_52604639	0.104662	MSX1	ENST00000551894.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80 	ENST00000553017.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80
hg19_v2_chr6_-_32784687_32784839	0.0894959	MSX1	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr9_+_130026756_130026871	0.0893968	MSX1	ENST00000314904.5|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3 	ENST00000373387.4|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3
hg19_v2_chr15_+_79166065_79166163	0.0879072	MSX1	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr10_+_90346519_90346519	0.0747107	MSX1	ENST00000371939.3|LIPJ|ENSG00000204022.5|lipase, family member J
hg19_v2_chr14_-_92247032_92247051	0.0712793	MSX1	ENST00000556661.1|CATSPERB|ENSG00000133962.3|catsper channel auxiliary subunit beta 	ENST00000553676.1|CATSPERB|ENSG00000133962.3|catsper channel auxiliary subunit beta 	ENST00000554560.1|CATSPERB|ENSG00000133962.3|catsper channel auxiliary subunit beta
hg19_v2_chrX_-_14891150_14891201	0.0682339	MSX1	ENST00000452869.1|FANCB|ENSG00000181544.9|Fanconi anemia, complementation group B 	ENST00000398334.1|FANCB|ENSG00000181544.9|Fanconi anemia, complementation group B 	ENST00000324138.3|FANCB|ENSG00000181544.9|Fanconi anemia, complementation group B
hg19_v2_chr12_+_82752647_82752673	0.0680597	MSX1	ENST00000550058.1|METTL25|ENSG00000127720.3|methyltransferase like 25
hg19_v2_chr10_+_135050908_135050908	0.0679305	MSX1	ENST00000325980.9|VENTX|ENSG00000151650.7|VENT homeobox
hg19_v2_chr6_-_76072719_76072770	0.0679123	MSX1	ENST00000370020.1|FILIP1|ENSG00000118407.10|filamin A interacting protein 1
hg19_v2_chr6_-_150212029_150212170	0.0654296	MSX1	ENST00000529948.1|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000357183.4|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000367363.3|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E
hg19_v2_chr14_-_64194745_64194799	0.0643089	MSX1	ENST00000247225.6|SGPP1|ENSG00000126821.7|sphingosine-1-phosphate phosphatase 1
hg19_v2_chr1_-_35450897_35450954	0.0617063	MSX1	ENST00000373337.3|ZMYM6NB|ENSG00000243749.1|ZMYM6 neighbor
hg19_v2_chr13_-_52733980_52734002	0.0599834	MSX1	ENST00000339406.3|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr1_-_20503917_20503917	0.0584835	MSX1	ENST00000429261.2|PLA2G2C|ENSG00000187980.6|phospholipase A2, group IIC
hg19_v2_chr14_+_101295638_101295752	0.0576593	MSX1	ENST00000523671.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr11_-_11374904_11374904	0.0571662	MSX1	ENST00000528848.2|CSNK2A3|ENSG00000254598.2|casein kinase 2, alpha 3 polypeptide
hg19_v2_chr7_-_105332084_105332111	0.0571633	MSX1	ENST00000472195.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr1_+_111415757_111415779	0.0567214	MSX1	ENST00000429072.2|CD53|ENSG00000143119.8|CD53 molecule 	ENST00000271324.5|CD53|ENSG00000143119.8|CD53 molecule
hg19_v2_chr9_-_75653627_75653649	0.0552099	MSX1	ENST00000446946.1|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1
hg19_v2_chr6_+_28249332_28249391	0.0538231	MSX1	ENST00000259883.3|PGBD1|ENSG00000137338.4|piggyBac transposable element derived 1
hg19_v2_chr9_+_115913222_115913266	0.0537978	MSX1	ENST00000259392.3|SLC31A2|ENSG00000136867.6|solute carrier family 31 (copper transporter), member 2
hg19_v2_chr14_-_75389975_75390099	0.0525921	MSX1	ENST00000555647.1|RPS6KL1|ENSG00000198208.7|ribosomal protein S6 kinase-like 1 	ENST00000557413.1|RPS6KL1|ENSG00000198208.7|ribosomal protein S6 kinase-like 1
hg19_v2_chr15_-_77712429_77712473	0.0523935	MSX1	ENST00000564328.1|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1 	ENST00000558305.1|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1
hg19_v2_chr16_-_9030515_9030586	0.0519826	MSX1	ENST00000535863.1|USP7|ENSG00000187555.10|ubiquitin specific peptidase 7 (herpes virus-associated) 	ENST00000381886.4|USP7|ENSG00000187555.10|ubiquitin specific peptidase 7 (herpes virus-associated)
hg19_v2_chr18_-_47721447_47721474	0.048806	MSX1	ENST00000285039.7|MYO5B|ENSG00000167306.14|myosin VB
hg19_v2_chr3_-_145881432_145881440	0.0486681	MSX1	ENST00000469350.1|PLOD2|ENSG00000152952.7|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
hg19_v2_chr20_+_52824367_52824409	0.048182	MSX1	ENST00000371419.2|PFDN4|ENSG00000101132.5|prefoldin subunit 4
hg19_v2_chr5_-_137475071_137475122	0.0480115	MSX1	ENST00000265191.2|NME5|ENSG00000112981.3|NME/NM23 family member 5
hg19_v2_chr12_+_27623565_27623565	0.046841	MSX1	ENST00000535986.1|SMCO2|ENSG00000165935.5|single-pass membrane protein with coiled-coil domains 2
hg19_v2_chr5_+_67586465_67586534	0.04574	MSX1	ENST00000336483.5|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr8_+_97597148_97597173	0.0454001	MSX1	ENST00000521590.1|SDC2|ENSG00000169439.7|syndecan 2
hg19_v2_chr11_+_61197572_61197620	0.0446263	MSX1	ENST00000542074.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000534878.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000537782.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000543265.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2
hg19_v2_chr10_-_29923893_29923907	0.0444916	MSX1	ENST00000355867.4|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr17_-_30228678_30228784	0.0443051	MSX1	ENST00000261708.4|UTP6|ENSG00000108651.5|UTP6, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chr15_-_77712477_77712499	0.0436403	MSX1	ENST00000560626.2|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1
hg19_v2_chr14_+_20215587_20215587	0.0427867	MSX1	ENST00000331723.1|OR4Q3|ENSG00000182652.1|olfactory receptor, family 4, subfamily Q, member 3
hg19_v2_chr4_+_169013666_169013697	0.0424407	MSX1	ENST00000359299.3|ANXA10|ENSG00000109511.6|annexin A10
hg19_v2_chr13_-_81801115_81801122	0.0416301	MSX1	ENST00000567258.1|LINC00564|ENSG00000260094.1|long intergenic non-protein coding RNA 564
hg19_v2_chr7_+_7811992_7811992	0.0408731	MSX1	ENST00000406829.1|RPA3-AS1|ENSG00000219545.5|RPA3 antisense RNA 1
hg19_v2_chr7_+_99425633_99425739	0.0405933	MSX1	ENST00000354829.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000421837.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000417625.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000342499.4|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000444905.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000415413.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000312017.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000222382.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43
hg19_v2_chr5_+_121647386_121647464	0.0389108	MSX1	ENST00000542191.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000506272.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000508681.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000509154.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr10_+_13142225_13142246	0.0382703	MSX1	ENST00000378747.3|OPTN|ENSG00000123240.12|optineurin
hg19_v2_chr2_+_175352114_175352240	0.0381806	MSX1	ENST00000444196.1|AC010894.3|ENSG00000226853.2|AC010894.3	ENST00000417038.1|AC010894.3|ENSG00000226853.2|AC010894.3	ENST00000606406.1|AC010894.3|ENSG00000226853.2|AC010894.3
hg19_v2_chrX_-_103499602_103499617	0.0352433	MSX1	ENST00000372588.4|ESX1|ENSG00000123576.5|ESX homeobox 1
hg19_v2_chr4_+_113568207_113568367	0.0342725	MSX1	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr1_+_224370873_224370968	0.0339475	MSX1	ENST00000323699.4|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1 	ENST00000391877.3|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1
hg19_v2_chr3_-_123339343_123339401	0.0339463	MSX1	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr3_+_171561127_171561306	0.0327637	MSX1	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chr6_+_134758827_134758863	0.032285	MSX1	ENST00000431422.1|LINC01010|ENSG00000236700.1|long intergenic non-protein coding RNA 1010
hg19_v2_chr15_-_42500351_42500523	0.0321969	MSX1	ENST00000348544.4|VPS39|ENSG00000166887.11|vacuolar protein sorting 39 homolog (S. cerevisiae) 	ENST00000318006.5|VPS39|ENSG00000166887.11|vacuolar protein sorting 39 homolog (S. cerevisiae)
hg19_v2_chr10_-_32667660_32667735	0.0319066	MSX1	ENST00000375110.2|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr11_+_327171_327415	0.0318631	MSX1	ENST00000534483.1|RP11-326C3.12|ENSG00000255328.1|RP11-326C3.12	ENST00000524824.1|RP11-326C3.12|ENSG00000255328.1|RP11-326C3.12	ENST00000531076.1|RP11-326C3.12|ENSG00000255328.1|RP11-326C3.12
hg19_v2_chr14_+_55494323_55494345	0.0317781	MSX1	ENST00000339298.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr20_+_56964253_56964369	0.031524	MSX1	ENST00000395802.3|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr6_+_28249299_28249319	0.0314673	MSX1	ENST00000405948.2|PGBD1|ENSG00000137338.4|piggyBac transposable element derived 1
hg19_v2_chr21_+_39668478_39668496	0.0314507	MSX1	ENST00000398927.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr2_+_202098203_202098256	0.0311657	MSX1	ENST00000450491.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000440732.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392258.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr11_-_92931098_92931173	0.0308943	MSX1	ENST00000326402.4|SLC36A4|ENSG00000180773.10|solute carrier family 36 (proton/amino acid symporter), member 4
hg19_v2_chr3_-_93781750_93781831	0.0308665	MSX1	ENST00000314636.2|DHFRL1|ENSG00000178700.3|dihydrofolate reductase-like 1
hg19_v2_chr11_-_102401469_102401488	0.0308158	MSX1	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr2_+_169312350_169312372	0.0307661	MSX1	ENST00000305747.6|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr14_+_55493920_55494013	0.0303772	MSX1	ENST00000395472.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4 	ENST00000555846.1|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr1_-_54405773_54405874	0.0295983	MSX1	ENST00000371376.1|HSPB11|ENSG00000081870.7|heat shock protein family B (small), member 11
hg19_v2_chr10_-_43892668_43892794	0.0295066	MSX1	ENST00000544000.1|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr1_+_158985457_158985468	0.02927	MSX1	ENST00000567661.1|IFI16|ENSG00000163565.14|interferon, gamma-inducible protein 16 	ENST00000474473.1|IFI16|ENSG00000163565.14|interferon, gamma-inducible protein 16
hg19_v2_chr15_+_77712993_77713081	0.0292297	MSX1	ENST00000336216.4|HMG20A|ENSG00000140382.10|high mobility group 20A 	ENST00000381714.3|HMG20A|ENSG00000140382.10|high mobility group 20A 	ENST00000558651.1|HMG20A|ENSG00000140382.10|high mobility group 20A
hg19_v2_chr10_+_13141585_13141603	0.0290398	MSX1	ENST00000378764.2|OPTN|ENSG00000123240.12|optineurin
hg19_v2_chr9_-_15510287_15510309	0.0289443	MSX1	ENST00000397519.2|PSIP1|ENSG00000164985.10|PC4 and SFRS1 interacting protein 1
hg19_v2_chr17_-_55162360_55162385	0.0282526	MSX1	ENST00000576871.1|RP11-166P13.3|ENSG00000263004.1|RP11-166P13.3	ENST00000576313.1|RP11-166P13.3|ENSG00000263004.1|RP11-166P13.3
hg19_v2_chr13_-_52733670_52733760	0.0278553	MSX1	ENST00000550841.1|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr12_+_122688090_122688284	0.0275747	MSX1	ENST00000324189.4|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 	ENST00000546192.1|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
hg19_v2_chr19_+_3762703_3762719	0.0274743	MSX1	ENST00000589174.1|MRPL54|ENSG00000183617.4|mitochondrial ribosomal protein L54
hg19_v2_chr7_-_92146729_92146876	0.0274683	MSX1	ENST00000541751.1|PEX1|ENSG00000127980.11|peroxisomal biogenesis factor 1
hg19_v2_chr4_+_119810134_119810192	0.0271787	MSX1	ENST00000434046.2|SYNPO2|ENSG00000172403.6|synaptopodin 2
hg19_v2_chr18_+_29598335_29598428	0.0268268	MSX1	ENST00000217740.3|RNF125|ENSG00000101695.4|ring finger protein 125, E3 ubiquitin protein ligase
hg19_v2_chr3_+_108308513_108308558	0.0267444	MSX1	ENST00000361582.3|DZIP3|ENSG00000198919.8|DAZ interacting zinc finger protein 3
hg19_v2_chrX_+_134654540_134654591	0.0264455	MSX1	ENST00000370752.4|DDX26B|ENSG00000165359.10|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
hg19_v2_chr14_-_73997901_73997916	0.0260678	MSX1	ENST00000557603.1|HEATR4|ENSG00000187105.4|HEAT repeat containing 4 	ENST00000556455.1|HEATR4|ENSG00000187105.4|HEAT repeat containing 4
hg19_v2_chr14_+_55595762_55595782	0.025473	MSX1	ENST00000254301.9|LGALS3|ENSG00000131981.11|lectin, galactoside-binding, soluble, 3
hg19_v2_chr13_-_88323218_88323434	0.0252127	MSX1	ENST00000436290.2|MIR4500HG|ENSG00000228824.2|MIR4500 host gene (non-protein coding) 	ENST00000453832.2|MIR4500HG|ENSG00000228824.2|MIR4500 host gene (non-protein coding) 	ENST00000606590.1|MIR4500HG|ENSG00000228824.2|MIR4500 host gene (non-protein coding)
hg19_v2_chr8_-_17555164_17555204	0.0250418	MSX1	ENST00000297488.6|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr2_-_88927092_88927099	0.0245685	MSX1	ENST00000303236.3|EIF2AK3|ENSG00000172071.7|eukaryotic translation initiation factor 2-alpha kinase 3
hg19_v2_chr4_-_120243545_120243562	0.0245165	MSX1	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr12_+_106751436_106751539	0.0243898	MSX1	ENST00000228347.4|POLR3B|ENSG00000013503.5|polymerase (RNA) III (DNA directed) polypeptide B
hg19_v2_chr11_+_12132117_12132160	0.0240382	MSX1	ENST00000256194.4|MICAL2|ENSG00000133816.9|microtubule associated monooxygenase, calponin and LIM domain containing 2
hg19_v2_chrX_+_23928500_23928500	0.0235192	MSX1	ENST00000435707.1|CXorf58|ENSG00000165182.6|chromosome X open reading frame 58
hg19_v2_chr20_+_5731027_5731055	0.0234999	MSX1	ENST00000378979.4|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000303142.6|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chr7_+_107220899_107220915	0.0233418	MSX1	ENST00000379117.2|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29 	ENST00000473124.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr9_+_79074068_79074150	0.0232969	MSX1	ENST00000444201.2|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2 	ENST00000376730.4|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2
hg19_v2_chr12_+_48592134_48592170	0.0232895	MSX1	ENST00000595310.1|DKFZP779L1853|ENSG00000269514.1|DKFZP779L1853
hg19_v2_chr5_-_75919253_75919269	0.0224747	MSX1	ENST00000296641.4|F2RL2|ENSG00000164220.6|coagulation factor II (thrombin) receptor-like 2
hg19_v2_chr12_+_56324756_56324873	0.0218337	MSX1	ENST00000331886.5|DGKA|ENSG00000065357.15|diacylglycerol kinase, alpha 80kDa 	ENST00000555090.1|DGKA|ENSG00000065357.15|diacylglycerol kinase, alpha 80kDa
hg19_v2_chr4_+_119809984_119810024	0.0214269	MSX1	ENST00000307142.4|SYNPO2|ENSG00000172403.6|synaptopodin 2 	ENST00000448416.2|SYNPO2|ENSG00000172403.6|synaptopodin 2 	ENST00000429713.2|SYNPO2|ENSG00000172403.6|synaptopodin 2
hg19_v2_chr1_+_76540386_76540445	0.0213262	MSX1	ENST00000328299.3|ST6GALNAC3|ENSG00000184005.9|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
hg19_v2_chr9_+_90112117_90112164	0.0207711	MSX1	ENST00000358077.5|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr1_+_84630574_84630602	0.0206414	MSX1	ENST00000413538.1|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta 	ENST00000417530.1|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr7_-_32338917_32338946	0.0204863	MSX1	ENST00000396193.1|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa
hg19_v2_chr5_+_82767583_82767744	0.0191917	MSX1	ENST00000512590.2|VCAN|ENSG00000038427.11|versican 	ENST00000513960.1|VCAN|ENSG00000038427.11|versican 	ENST00000513984.1|VCAN|ENSG00000038427.11|versican 	ENST00000502527.2|VCAN|ENSG00000038427.11|versican
hg19_v2_chr14_+_31046959_31046972	0.018786	MSX1	ENST00000547532.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase 	ENST00000555429.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase
hg19_v2_chr17_-_48785216_48785291	0.0184831	MSX1	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr1_+_8021954_8022038	0.0183089	MSX1	ENST00000377491.1|PARK7|ENSG00000116288.8|parkinson protein 7 	ENST00000377488.1|PARK7|ENSG00000116288.8|parkinson protein 7
hg19_v2_chr5_+_82767487_82767510	0.0172612	MSX1	ENST00000343200.5|VCAN|ENSG00000038427.11|versican 	ENST00000342785.4|VCAN|ENSG00000038427.11|versican
hg19_v2_chr3_-_190040223_190040264	0.0164472	MSX1	ENST00000295522.3|CLDN1|ENSG00000163347.5|claudin 1
hg19_v2_chr10_-_61899124_61899158	0.0158813	MSX1	ENST00000373815.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr7_+_133615169_133615222	0.0158708	MSX1	ENST00000541309.1|EXOC4|ENSG00000131558.10|exocyst complex component 4
hg19_v2_chr20_+_5731083_5731100	0.0151049	MSX1	ENST00000445603.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000442185.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chrX_+_73164149_73164166	0.0147797	MSX1	ENST00000602938.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602294.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602920.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602737.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602772.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding)
hg19_v2_chr7_+_16793160_16793160	0.0147347	MSX1	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr18_+_61637159_61637483	0.014616	MSX1	ENST00000397985.2|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000353706.2|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000542677.1|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000397988.3|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000448851.1|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8
hg19_v2_chr17_+_55162453_55162594	0.0141139	MSX1	ENST00000575322.1|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1 	ENST00000337714.3|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1 	ENST00000314126.3|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1
hg19_v2_chr21_+_17792672_17792775	0.0138896	MSX1	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr14_-_75389925_75389969	0.0131302	MSX1	ENST00000556776.1|RPS6KL1|ENSG00000198208.7|ribosomal protein S6 kinase-like 1
hg19_v2_chr16_-_71518504_71518542	0.0130144	MSX1	ENST00000565100.2|ZNF19|ENSG00000157429.11|zinc finger protein 19
hg19_v2_chr5_+_82767284_82767310	0.0120951	MSX1	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr1_+_160160346_160160401	0.0119706	MSX1	ENST00000368078.3|CASQ1|ENSG00000143318.8|calsequestrin 1 (fast-twitch, skeletal muscle)
hg19_v2_chr4_+_146539415_146539415	0.0117794	MSX1	ENST00000281317.5|MMAA|ENSG00000151611.9|methylmalonic aciduria (cobalamin deficiency) cblA type
hg19_v2_chr14_+_45464658_45464683	0.0117118	MSX1	ENST00000555874.1|FAM179B|ENSG00000198718.8|family with sequence similarity 179, member B
hg19_v2_chr8_+_28748765_28748833	0.0107132	MSX1	ENST00000355231.5|HMBOX1|ENSG00000147421.13|homeobox containing 1
hg19_v2_chr1_-_209792111_209792143	0.0101435	MSX1	ENST00000455193.1|LAMB3|ENSG00000196878.8|laminin, beta 3
hg19_v2_chr7_+_36450169_36450224	0.0091832	MSX1	ENST00000428612.1|ANLN|ENSG00000011426.6|anillin, actin binding protein
hg19_v2_chr2_-_109605663_109605828	0.008774	MSX1	ENST00000409271.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000258443.2|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000376651.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor
hg19_v2_chr1_+_160160283_160160292	0.00834319	MSX1	ENST00000368079.3|CASQ1|ENSG00000143318.8|calsequestrin 1 (fast-twitch, skeletal muscle)
hg19_v2_chr13_+_49551020_49551097	0.00830113	MSX1	ENST00000541916.1|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr2_+_158114051_158114110	0.00784598	MSX1	ENST00000259056.4|GALNT5|ENSG00000136542.4|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)
hg19_v2_chr2_-_169746878_169746970	0.00766705	MSX1	ENST00000282074.2|SPC25|ENSG00000152253.4|SPC25, NDC80 kinetochore complex component
hg19_v2_chr18_-_3874271_3874337	0.00765048	MSX1	ENST00000400149.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400155.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400150.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr3_+_93781728_93781760	0.00650533	MSX1	ENST00000314622.4|NSUN3|ENSG00000178694.5|NOP2/Sun domain family, member 3
hg19_v2_chr14_+_68086515_68086595	0.00622654	MSX1	ENST00000261783.3|ARG2|ENSG00000081181.3|arginase 2
hg19_v2_chr10_+_32873190_32873190	0.0060198	MSX1	ENST00000375025.4|C10orf68|ENSG00000150076.18|Homo sapiens coiled-coil domain containing 7 (CCDC7), transcript variant 5, mRNA.
hg19_v2_chr12_-_82752565_82752579	0.00598397	MSX1	ENST00000256151.7|CCDC59|ENSG00000133773.7|coiled-coil domain containing 59
hg19_v2_chr19_+_29456034_29456041	0.00576329	MSX1	ENST00000589921.1|LINC00906|ENSG00000267339.1|long intergenic non-protein coding RNA 906
hg19_v2_chr3_+_108308559_108308584	0.00492966	MSX1	ENST00000486815.1|DZIP3|ENSG00000198919.8|DAZ interacting zinc finger protein 3
hg19_v2_chr7_-_16840820_16841011	0.00486706	MSX1	ENST00000450569.1|AGR2|ENSG00000106541.7|anterior gradient 2
hg19_v2_chr13_+_103459704_103459704	0.00436299	MSX1	ENST00000602836.1|BIVM-ERCC5|ENSG00000270181.1|BIVM-ERCC5 readthrough
hg19_v2_chr5_+_121465207_121465216	0.00430959	MSX1	ENST00000296600.4|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr12_-_10541575_10541616	0.00411646	MSX1	ENST00000540818.1|KLRK1|ENSG00000213809.4|killer cell lectin-like receptor subfamily K, member 1
hg19_v2_chr9_-_86593238_86593367	0.00397599	MSX1	ENST00000351839.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr8_-_99057742_99057818	0.00394068	MSX1	ENST00000521291.1|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000396070.2|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000523172.1|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000287038.3|RPL30|ENSG00000156482.6|ribosomal protein L30
hg19_v2_chr3_-_123512688_123512717	0.00387451	MSX1	ENST00000475616.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr3_+_187957646_187957656	0.00384564	MSX1	ENST00000457242.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr3_-_123339418_123339473	0.00309719	MSX1	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr1_+_210501589_210501609	0.00260552	MSX1	ENST00000413764.2|HHAT|ENSG00000054392.8|hedgehog acyltransferase 	ENST00000541565.1|HHAT|ENSG00000054392.8|hedgehog acyltransferase
hg19_v2_chr2_-_136288113_136288301	0.00249633	MSX1	ENST00000401392.1|ZRANB3|ENSG00000121988.13|zinc finger, RAN-binding domain containing 3
hg19_v2_chr3_+_108308845_108308902	0.0024869	MSX1	ENST00000479138.1|DZIP3|ENSG00000198919.8|DAZ interacting zinc finger protein 3
hg19_v2_chr6_-_84419101_84419127	0.00247633	MSX1	ENST00000520302.1|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa 	ENST00000520213.1|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa 	ENST00000439399.2|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa 	ENST00000428679.2|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa 	ENST00000437520.1|SNAP91|ENSG00000065609.10|synaptosomal-associated protein, 91kDa
hg19_v2_chr11_+_12766583_12766592	0.00232526	MSX1	ENST00000361985.2|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr1_-_167487808_167487847	0.00198709	MSX1	ENST00000392122.3|CD247|ENSG00000198821.6|CD247 molecule
hg19_v2_chrX_-_122756660_122756696	0.000988959	MSX1	ENST00000441692.1|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chrX_+_1710484_1710537	0.000854109	MSX1	ENST00000313871.3|AKAP17A|ENSG00000197976.6|A kinase (PRKA) anchor protein 17A 	ENST00000381261.3|AKAP17A|ENSG00000197976.6|A kinase (PRKA) anchor protein 17A
hg19_v2_chr5_-_75919217_75919250	0.000536241	MSX1	ENST00000504899.1|F2RL2|ENSG00000164220.6|coagulation factor II (thrombin) receptor-like 2
hg19_v2_chr1_-_109935819_109935979	0.000404159	MSX1	ENST00000538502.1|SORT1|ENSG00000134243.7|sortilin 1
hg19_v2_chr14_+_52327109_52327132	0.000131416	MSX1	ENST00000335281.4|GNG2|ENSG00000186469.4|guanine nucleotide binding protein (G protein), gamma 2
