hg19_v2_chr2_+_179318295_179318295	0.269401	LHX2	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr7_-_54826869_54826880	0.226643	LHX2	ENST00000450622.1|SEC61G|ENSG00000132432.9|Sec61 gamma subunit
hg19_v2_chr2_+_29001711_29001866	0.143404	LHX2	ENST00000418910.1|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr12_-_74686314_74686425	0.14012	LHX2	ENST00000551210.1|RP11-81H3.2|ENSG00000251138.2|RP11-81H3.2	ENST00000515416.2|RP11-81H3.2|ENSG00000251138.2|RP11-81H3.2	ENST00000549905.1|RP11-81H3.2|ENSG00000251138.2|RP11-81H3.2
hg19_v2_chr4_+_70916119_70916167	0.132321	LHX2	ENST00000246896.3|HTN1|ENSG00000126550.4|histatin 1 	ENST00000511674.1|HTN1|ENSG00000126550.4|histatin 1
hg19_v2_chr12_+_6309517_6309615	0.127504	LHX2	ENST00000382519.4|CD9|ENSG00000010278.7|CD9 molecule 	ENST00000009180.4|CD9|ENSG00000010278.7|CD9 molecule
hg19_v2_chr14_+_100532771_100532783	0.126364	LHX2	ENST00000557153.1|EVL|ENSG00000196405.8|Enah/Vasp-like
hg19_v2_chr6_-_138833630_138833677	0.123655	LHX2	ENST00000533765.1|NHSL1|ENSG00000135540.7|NHS-like 1
hg19_v2_chr14_-_51027838_51027851	0.120178	LHX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr12_+_41136144_41136158	0.117736	LHX2	ENST00000548005.1|CNTN1|ENSG00000018236.10|contactin 1 	ENST00000552248.1|CNTN1|ENSG00000018236.10|contactin 1
hg19_v2_chr7_-_54826920_54826939	0.11704	LHX2	ENST00000395535.3|SEC61G|ENSG00000132432.9|Sec61 gamma subunit 	ENST00000352861.4|SEC61G|ENSG00000132432.9|Sec61 gamma subunit
hg19_v2_chr14_+_20187174_20187174	0.114009	LHX2	ENST00000557414.1|OR4N2|ENSG00000176294.3|olfactory receptor, family 4, subfamily N, member 2
hg19_v2_chrX_+_19373700_19373845	0.112745	LHX2	ENST00000379804.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1
hg19_v2_chr2_+_200472779_200472816	0.112654	LHX2	ENST00000427045.1|AC093590.1|ENSG00000238217.1|AC093590.1	ENST00000419243.1|AC093590.1|ENSG00000238217.1|AC093590.1
hg19_v2_chr5_-_133702761_133702793	0.112267	LHX2	ENST00000521118.1|CDKL3|ENSG00000006837.7|cyclin-dependent kinase-like 3 	ENST00000265334.4|CDKL3|ENSG00000006837.7|cyclin-dependent kinase-like 3 	ENST00000435211.1|CDKL3|ENSG00000006837.7|cyclin-dependent kinase-like 3
hg19_v2_chr1_+_28527070_28527070	0.107455	LHX2	ENST00000596102.1|AL353354.2|ENSG00000269804.1|AL353354.2
hg19_v2_chr7_-_151217166_151217206	0.0993011	LHX2	ENST00000496004.1|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr3_+_57882024_57882045	0.0971598	LHX2	ENST00000494088.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr8_+_66955648_66955712	0.0959665	LHX2	ENST00000522619.1|DNAJC5B|ENSG00000147570.5|DnaJ (Hsp40) homolog, subfamily C, member 5 beta
hg19_v2_chr2_-_55276320_55276334	0.0948573	LHX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr3_-_12587055_12587055	0.0914741	LHX2	ENST00000564146.3|C3orf83|ENSG00000225526.4|chromosome 3 open reading frame 83
hg19_v2_chr13_+_19756173_19756185	0.0912659	LHX2	ENST00000382988.2|RP11-408E5.4|ENSG00000121388.4|RP11-408E5.4
hg19_v2_chr18_+_3247779_3247871	0.0896503	LHX2	ENST00000578611.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric 	ENST00000583449.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric
hg19_v2_chr14_+_56584414_56584532	0.0893337	LHX2	ENST00000559044.1|PELI2|ENSG00000139946.5|pellino E3 ubiquitin protein ligase family member 2
hg19_v2_chr9_-_125240235_125240235	0.089017	LHX2	ENST00000259357.2|OR1J1|ENSG00000136834.2|olfactory receptor, family 1, subfamily J, member 1
hg19_v2_chr15_-_72521017_72521045	0.087828	LHX2	ENST00000561609.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr1_-_168464875_168464884	0.082944	LHX2	ENST00000422253.1|RP5-968D22.3|ENSG00000237658.1|RP5-968D22.3
hg19_v2_chr2_-_10587897_10587926	0.0801536	LHX2	ENST00000405333.1|ODC1|ENSG00000115758.8|ornithine decarboxylase 1 	ENST00000443218.1|ODC1|ENSG00000115758.8|ornithine decarboxylase 1
hg19_v2_chr8_+_92114060_92114060	0.0796764	LHX2	ENST00000518304.1|LRRC69|ENSG00000214954.4|leucine rich repeat containing 69
hg19_v2_chr16_+_53412368_53412387	0.0791926	LHX2	ENST00000565189.1|RP11-44F14.2|ENSG00000261804.1|RP11-44F14.2
hg19_v2_chr1_+_62439037_62439047	0.0783705	LHX2	ENST00000545929.1|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chr2_-_198540751_198540790	0.0775767	LHX2	ENST00000429081.1|RFTN2|ENSG00000162944.6|raftlin family member 2
hg19_v2_chr16_-_66864806_66864900	0.0760783	LHX2	ENST00000566336.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000394074.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000563185.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000359087.4|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000379463.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000565535.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000290810.3|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1
hg19_v2_chr8_+_52730143_52730143	0.0756505	LHX2	ENST00000415643.1|AC090186.1|ENSG00000232941.1|Uncharacterized protein
hg19_v2_chr14_+_56078695_56078784	0.0726126	LHX2	ENST00000416613.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr1_+_95616933_95616933	0.0699071	LHX2	ENST00000604203.1|RP11-57H12.6|ENSG00000271092.1|TMEM56-RWDD3 readthrough
hg19_v2_chr2_-_55237484_55237585	0.0690712	LHX2	ENST00000394609.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr6_-_76072719_76072770	0.0667656	LHX2	ENST00000370020.1|FILIP1|ENSG00000118407.10|filamin A interacting protein 1
hg19_v2_chr7_+_101460882_101460923	0.0665731	LHX2	ENST00000292535.7|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000549414.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000550008.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000546411.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000556210.1|CUX1|ENSG00000257923.5|cut-like homeobox 1
hg19_v2_chr10_-_37891859_37891859	0.0650114	LHX2	ENST00000544824.1|MTRNR2L7|ENSG00000256892.1|MT-RNR2-like 7
hg19_v2_chr2_+_109204909_109204928	0.0649126	LHX2	ENST00000393310.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr13_+_73632897_73632930	0.064835	LHX2	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr17_-_62499334_62499553	0.064179	LHX2	ENST00000579996.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr17_+_45000483_45000563	0.0632175	LHX2	ENST00000576910.2|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000439730.2|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000393456.2|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000415811.2|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000575949.1|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000225567.4|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000572403.1|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000570879.1|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2
hg19_v2_chr7_-_103848405_103848495	0.0614179	LHX2	ENST00000447452.2|ORC5|ENSG00000164815.6|origin recognition complex, subunit 5 	ENST00000545943.1|ORC5|ENSG00000164815.6|origin recognition complex, subunit 5 	ENST00000297431.4|ORC5|ENSG00000164815.6|origin recognition complex, subunit 5
hg19_v2_chr16_+_333152_333180	0.0609882	LHX2	ENST00000219406.6|PDIA2|ENSG00000185615.11|protein disulfide isomerase family A, member 2 	ENST00000404312.1|PDIA2|ENSG00000185615.11|protein disulfide isomerase family A, member 2 	ENST00000456379.1|PDIA2|ENSG00000185615.11|protein disulfide isomerase family A, member 2
hg19_v2_chr12_+_122688090_122688284	0.0597237	LHX2	ENST00000324189.4|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 	ENST00000546192.1|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
hg19_v2_chr7_-_5998714_5998714	0.0589936	LHX2	ENST00000539903.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas)
hg19_v2_chr3_-_107099454_107099516	0.0588268	LHX2	ENST00000593837.1|RP11-446H18.5|ENSG00000239828.2|RP11-446H18.5	ENST00000599431.1|RP11-446H18.5|ENSG00000239828.2|RP11-446H18.5
hg19_v2_chr5_-_159546396_159546470	0.0580052	LHX2	ENST00000523662.1|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000456329.3|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000307063.7|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A
hg19_v2_chr17_-_57229155_57229198	0.0565886	LHX2	ENST00000584089.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr13_+_78315466_78315519	0.0536954	LHX2	ENST00000314070.5|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1 	ENST00000462234.1|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1
hg19_v2_chrX_+_11129388_11129485	0.05154	LHX2	ENST00000321143.4|HCCS|ENSG00000004961.10|holocytochrome c synthase 	ENST00000380763.3|HCCS|ENSG00000004961.10|holocytochrome c synthase 	ENST00000380762.4|HCCS|ENSG00000004961.10|holocytochrome c synthase
hg19_v2_chr3_-_191000172_191000209	0.0510905	LHX2	ENST00000427544.2|UTS2B|ENSG00000188958.5|urotensin 2B
hg19_v2_chr13_+_78315528_78315673	0.0509616	LHX2	ENST00000496045.1|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1
hg19_v2_chr9_-_98268883_98268947	0.0489571	LHX2	ENST00000551630.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000548420.1|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr2_-_231084617_231084654	0.0487537	LHX2	ENST00000409815.2|SP110|ENSG00000135899.12|SP110 nuclear body protein
hg19_v2_chr6_-_131291572_131291623	0.0474841	LHX2	ENST00000529208.1|EPB41L2|ENSG00000079819.12|erythrocyte membrane protein band 4.1-like 2
hg19_v2_chr3_-_129513259_129513392	0.0467456	LHX2	ENST00000329333.5|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr21_-_35014027_35014066	0.04488	LHX2	ENST00000399442.1|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000413017.2|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000445393.1|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000417979.1|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000426935.1|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000381540.3|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000361534.2|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000381554.3|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1
hg19_v2_chr11_-_108093329_108093375	0.0445053	LHX2	ENST00000278612.8|NPAT|ENSG00000149308.12|nuclear protein, ataxia-telangiectasia locus
hg19_v2_chr18_+_32556892_32557026	0.0430542	LHX2	ENST00000591734.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000413393.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000589180.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000587359.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr4_+_153021899_153021970	0.0426572	LHX2	ENST00000509332.1|RP11-18H21.1|ENSG00000245954.2|RP11-18H21.1	ENST00000504144.1|RP11-18H21.1|ENSG00000245954.2|RP11-18H21.1	ENST00000499452.2|RP11-18H21.1|ENSG00000245954.2|RP11-18H21.1
hg19_v2_chr18_+_68002675_68002675	0.041902	LHX2	ENST00000584919.1|RP11-41O4.1|ENSG00000266258.1|Uncharacterized protein
hg19_v2_chr3_+_119187785_119187863	0.0404292	LHX2	ENST00000295588.4|POGLUT1|ENSG00000163389.6|protein O-glucosyltransferase 1 	ENST00000476573.1|POGLUT1|ENSG00000163389.6|protein O-glucosyltransferase 1
hg19_v2_chr3_+_49977894_49977934	0.0403146	LHX2	ENST00000433811.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr9_+_21440440_21440440	0.0402345	LHX2	ENST00000276927.1|IFNA1|ENSG00000197919.3|interferon, alpha 1
hg19_v2_chr16_-_23652570_23652663	0.0395096	LHX2	ENST00000261584.4|PALB2|ENSG00000083093.5|partner and localizer of BRCA2
hg19_v2_chr2_-_128284020_128284091	0.039311	LHX2	ENST00000295321.4|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae) 	ENST00000455721.2|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae)
hg19_v2_chr1_+_109265033_109265033	0.0386763	LHX2	ENST00000445274.1|FNDC7|ENSG00000143107.4|fibronectin type III domain containing 7
hg19_v2_chr4_-_185694872_185695027	0.0379946	LHX2	ENST00000505492.1|ACSL1|ENSG00000151726.9|acyl-CoA synthetase long-chain family member 1
hg19_v2_chr3_-_131221790_131221835	0.0379818	LHX2	ENST00000512877.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000264995.3|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000511168.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000425847.2|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3
hg19_v2_chr2_+_179317994_179317994	0.037278	LHX2	ENST00000375129.4|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr14_-_69864993_69865056	0.037064	LHX2	ENST00000555373.1|ERH|ENSG00000100632.6|enhancer of rudimentary homolog (Drosophila)
hg19_v2_chr2_+_234216454_234216469	0.0360007	LHX2	ENST00000447536.1|SAG|ENSG00000130561.12|S-antigen; retina and pineal gland (arrestin) 	ENST00000409110.1|SAG|ENSG00000130561.12|S-antigen; retina and pineal gland (arrestin)
hg19_v2_chr11_+_94706973_94706987	0.0353951	LHX2	ENST00000536741.1|KDM4D|ENSG00000186280.5|lysine (K)-specific demethylase 4D
hg19_v2_chr3_-_131221771_131221789	0.0352256	LHX2	ENST00000510154.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000507669.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3
hg19_v2_chr2_-_175712270_175712316	0.0350061	LHX2	ENST00000295497.7|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000444394.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr9_-_77643307_77643366	0.0344085	LHX2	ENST00000376834.3|C9orf41|ENSG00000156017.8|chromosome 9 open reading frame 41 	ENST00000376830.3|C9orf41|ENSG00000156017.8|chromosome 9 open reading frame 41
hg19_v2_chr19_+_42212501_42212521	0.0339009	LHX2	ENST00000398599.4|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5
hg19_v2_chr2_-_231084659_231084721	0.0336365	LHX2	ENST00000258381.6|SP110|ENSG00000135899.12|SP110 nuclear body protein 	ENST00000358662.4|SP110|ENSG00000135899.12|SP110 nuclear body protein 	ENST00000455674.1|SP110|ENSG00000135899.12|SP110 nuclear body protein 	ENST00000392048.3|SP110|ENSG00000135899.12|SP110 nuclear body protein
hg19_v2_chr12_+_128399965_128400017	0.0326662	LHX2	ENST00000540882.1|LINC00507|ENSG00000256193.1|long intergenic non-protein coding RNA 507 	ENST00000542089.1|LINC00507|ENSG00000256193.1|long intergenic non-protein coding RNA 507
hg19_v2_chr19_+_42212526_42212576	0.0324066	LHX2	ENST00000598976.1|CEA|ENSG00000267881.1|Uncharacterized protein  	ENST00000221992.6|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5 	ENST00000405816.1|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5 	ENST00000435837.2|CEA|ENSG00000267881.1|Uncharacterized protein
hg19_v2_chrX_-_19988382_19988416	0.032191	LHX2	ENST00000356980.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379687.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379682.4|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23
hg19_v2_chr5_-_75008244_75008286	0.0316119	LHX2	ENST00000510798.1|POC5|ENSG00000152359.10|POC5 centriolar protein 	ENST00000446329.2|POC5|ENSG00000152359.10|POC5 centriolar protein
hg19_v2_chr21_+_35014783_35014816	0.0314983	LHX2	ENST00000381291.4|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000381285.4|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399367.3|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399352.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399355.2|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399349.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein)
hg19_v2_chr9_-_116061476_116061476	0.0312388	LHX2	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr19_-_44384291_44384291	0.0309259	LHX2	ENST00000324394.6|ZNF404|ENSG00000176222.7|zinc finger protein 404
hg19_v2_chr8_-_109260897_109260994	0.0306195	LHX2	ENST00000521297.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000519030.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000521440.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000518345.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000519627.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000220849.5|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E
hg19_v2_chr10_-_29923893_29923907	0.0298144	LHX2	ENST00000355867.4|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr15_+_69854027_69854062	0.0292916	LHX2	ENST00000498938.2|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr9_-_139137648_139137687	0.0288666	LHX2	ENST00000358701.5|QSOX2|ENSG00000165661.11|quiescin Q6 sulfhydryl oxidase 2
hg19_v2_chr21_+_35014706_35014767	0.0284015	LHX2	ENST00000399353.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000444491.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000381318.3|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein)
hg19_v2_chr5_+_180682720_180682720	0.028262	LHX2	ENST00000599439.1|AC008443.1|ENSG00000268397.1|CDNA: FLJ23158 fis, clone LNG09623; Uncharacterized protein
hg19_v2_chr1_-_232651312_232651312	0.0273885	LHX2	ENST00000262861.4|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chrX_-_11129229_11129273	0.0268202	LHX2	ENST00000608176.1|RP11-120D5.1|ENSG00000234129.3|RP11-120D5.1	ENST00000433747.2|RP11-120D5.1|ENSG00000234129.3|RP11-120D5.1	ENST00000608576.1|RP11-120D5.1|ENSG00000234129.3|RP11-120D5.1	ENST00000608916.1|RP11-120D5.1|ENSG00000234129.3|RP11-120D5.1
hg19_v2_chr6_+_3259148_3259294	0.0264575	LHX2	ENST00000419065.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4 	ENST00000473000.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4 	ENST00000451246.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4 	ENST00000454610.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4
hg19_v2_chr21_+_34619079_34619079	0.0262372	LHX2	ENST00000433395.2|AP000295.9|ENSG00000249624.4|AP000295.9
hg19_v2_chr1_+_145883868_145883868	0.0254005	LHX2	ENST00000447947.2|GPR89C|ENSG00000196644.8|G protein-coupled receptor 89C
hg19_v2_chr16_+_31271274_31271315	0.0251239	LHX2	ENST00000287497.8|ITGAM|ENSG00000169896.12|integrin, alpha M (complement component 3 receptor 3 subunit) 	ENST00000544665.3|ITGAM|ENSG00000169896.12|integrin, alpha M (complement component 3 receptor 3 subunit)
hg19_v2_chr13_+_33160553_33160564	0.0239382	LHX2	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr1_-_183560011_183560033	0.0232509	LHX2	ENST00000367536.1|NCF2|ENSG00000116701.10|neutrophil cytosolic factor 2
hg19_v2_chr1_+_207238326_207238354	0.0222576	LHX2	ENST00000541914.1|PFKFB2|ENSG00000123836.10|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
hg19_v2_chr18_-_44702668_44702747	0.0219095	LHX2	ENST00000256433.3|IER3IP1|ENSG00000134049.3|immediate early response 3 interacting protein 1
hg19_v2_chr5_-_150473127_150473157	0.0210189	LHX2	ENST00000521001.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr5_+_118668846_118668885	0.0206903	LHX2	ENST00000513374.1|TNFAIP8|ENSG00000145779.7|tumor necrosis factor, alpha-induced protein 8
hg19_v2_chr14_-_34420259_34420291	0.0203674	LHX2	ENST00000250457.3|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3 	ENST00000547327.2|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3
hg19_v2_chr12_+_16064106_16064238	0.0198472	LHX2	ENST00000428559.2|DERA|ENSG00000023697.8|deoxyribose-phosphate aldolase (putative)
hg19_v2_chr11_+_113258495_113258513	0.0196888	LHX2	ENST00000303941.3|ANKK1|ENSG00000170209.4|ankyrin repeat and kinase domain containing 1
hg19_v2_chr1_-_147142557_147142620	0.0193331	LHX2	ENST00000369238.6|ACP6|ENSG00000162836.7|acid phosphatase 6, lysophosphatidic
hg19_v2_chrM_+_12331_12348	0.0191126	LHX2	ENST00000361567.2|MT-ND5|ENSG00000198786.2|mitochondrially encoded NADH dehydrogenase 5
hg19_v2_chr10_-_116286656_116286693	0.0189505	LHX2	ENST00000428430.1|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000369266.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000392952.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1
hg19_v2_chr8_+_76452097_76452126	0.01891	LHX2	ENST00000396423.2|HNF4G|ENSG00000164749.7|hepatocyte nuclear factor 4, gamma
hg19_v2_chr17_-_34308524_34308548	0.0188868	LHX2	ENST00000293275.3|CCL16|ENSG00000161573.6|chemokine (C-C motif) ligand 16
hg19_v2_chr6_+_130339710_130339745	0.0184885	LHX2	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr6_+_112408768_112408894	0.0181672	LHX2	ENST00000368656.2|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B 	ENST00000604268.1|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B
hg19_v2_chr5_-_156536126_156536141	0.0181658	LHX2	ENST00000522593.1|HAVCR2|ENSG00000135077.4|hepatitis A virus cellular receptor 2
hg19_v2_chrX_+_18725758_18725784	0.0181138	LHX2	ENST00000472826.1|PPEF1|ENSG00000086717.14|protein phosphatase, EF-hand calcium binding domain 1 	ENST00000544635.1|PPEF1|ENSG00000086717.14|protein phosphatase, EF-hand calcium binding domain 1 	ENST00000496075.2|PPEF1|ENSG00000086717.14|protein phosphatase, EF-hand calcium binding domain 1
hg19_v2_chr12_+_27932803_27932953	0.0180191	LHX2	ENST00000381271.2|KLHL42|ENSG00000087448.5|kelch-like family member 42
hg19_v2_chr10_+_124320156_124320181	0.016692	LHX2	ENST00000338354.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000344338.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000330163.4|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368909.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368955.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368956.2|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr12_+_12510352_12510360	0.0165992	LHX2	ENST00000298571.6|LOH12CR1|ENSG00000165714.6|loss of heterozygosity, 12, chromosomal region 1
hg19_v2_chr16_-_18887627_18887627	0.0162163	LHX2	ENST00000563235.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr1_+_160709055_160709074	0.0161702	LHX2	ENST00000368043.3|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000368042.3|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000458602.2|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000458104.2|SLAMF7|ENSG00000026751.12|SLAM family member 7
hg19_v2_chr14_-_78083112_78083140	0.016157	LHX2	ENST00000216484.2|SPTLC2|ENSG00000100596.2|serine palmitoyltransferase, long chain base subunit 2
hg19_v2_chr2_+_234627424_234627444	0.015916	LHX2	ENST00000373409.3|UGT1A4|ENSG00000244474.1|UDP glucuronosyltransferase 1 family, polypeptide A4
hg19_v2_chr4_-_57253587_57253670	0.0158678	LHX2	ENST00000513376.1|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000602986.1|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000434343.2|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000451613.1|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000205214.6|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000502617.1|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase
hg19_v2_chr4_-_89951028_89951062	0.0150656	LHX2	ENST00000506913.1|FAM13A|ENSG00000138640.10|family with sequence similarity 13, member A
hg19_v2_chr4_+_128554081_128554121	0.0135942	LHX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr1_+_219347203_219347233	0.0135767	LHX2	ENST00000366927.3|LYPLAL1|ENSG00000143353.7|lysophospholipase-like 1
hg19_v2_chr14_-_23395623_23395665	0.0134145	LHX2	ENST00000556043.1|PRMT5|ENSG00000100462.11|protein arginine methyltransferase 5
hg19_v2_chr12_+_128399917_128399958	0.0128558	LHX2	ENST00000544645.1|LINC00507|ENSG00000256193.1|long intergenic non-protein coding RNA 507
hg19_v2_chr2_-_175712479_175712503	0.0122166	LHX2	ENST00000443238.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr10_-_69597828_69597854	0.0121593	LHX2	ENST00000339758.7|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr9_+_108320392_108320444	0.0120247	LHX2	ENST00000602661.1|FKTN|ENSG00000106692.9|fukutin 	ENST00000223528.2|FKTN|ENSG00000106692.9|fukutin 	ENST00000448551.2|FKTN|ENSG00000106692.9|fukutin 	ENST00000540160.1|FKTN|ENSG00000106692.9|fukutin
hg19_v2_chr8_+_28748765_28748833	0.0120175	LHX2	ENST00000355231.5|HMBOX1|ENSG00000147421.13|homeobox containing 1
hg19_v2_chr2_+_87769459_87769476	0.0116071	LHX2	ENST00000414030.1|LINC00152|ENSG00000222041.6|long intergenic non-protein coding RNA 152 	ENST00000437561.1|LINC00152|ENSG00000222041.6|long intergenic non-protein coding RNA 152
hg19_v2_chr3_+_57881966_57881977	0.0112992	LHX2	ENST00000495364.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr2_-_99279928_99279942	0.0108512	LHX2	ENST00000414521.2|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr17_+_17082842_17082884	0.0106771	LHX2	ENST00000579361.1|MPRIP|ENSG00000133030.15|myosin phosphatase Rho interacting protein
hg19_v2_chr3_-_98619999_98620015	0.0103824	LHX2	ENST00000449482.1|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chrX_-_20074895_20074954	0.0103522	LHX2	ENST00000543767.1|MAP7D2|ENSG00000184368.11|MAP7 domain containing 2
hg19_v2_chr1_+_182419261_182419285	0.010068	LHX2	ENST00000294854.8|RGSL1|ENSG00000121446.13|regulator of G-protein signaling like 1 	ENST00000542961.1|RGSL1|ENSG00000121446.13|regulator of G-protein signaling like 1
hg19_v2_chr2_-_198540719_198540748	0.00803915	LHX2	ENST00000295049.4|RFTN2|ENSG00000162944.6|raftlin family member 2
hg19_v2_chr11_-_31531121_31531192	0.00754489	LHX2	ENST00000532287.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000526776.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000534812.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000529749.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000278200.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000530023.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000533642.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
hg19_v2_chr11_+_24518723_24518757	0.00746907	LHX2	ENST00000336930.6|LUZP2|ENSG00000187398.7|leucine zipper protein 2 	ENST00000529015.1|LUZP2|ENSG00000187398.7|leucine zipper protein 2 	ENST00000533227.1|LUZP2|ENSG00000187398.7|leucine zipper protein 2
hg19_v2_chr13_+_24844857_24844930	0.00717864	LHX2	ENST00000409126.1|SPATA13|ENSG00000182957.11|spermatogenesis associated 13 	ENST00000343003.6|SPATA13|ENSG00000182957.11|spermatogenesis associated 13
hg19_v2_chr1_-_75100539_75100563	0.00670263	LHX2	ENST00000420661.2|C1orf173|ENSG00000178965.9|chromosome 1 open reading frame 173
hg19_v2_chr2_+_102953608_102953727	0.00630051	LHX2	ENST00000311734.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000409584.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr10_+_69865866_69865912	0.0058173	LHX2	ENST00000354393.2|MYPN|ENSG00000138347.11|myopalladin
hg19_v2_chr6_+_125524785_125524861	0.0057737	LHX2	ENST00000392482.2|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr8_+_110656344_110656361	0.00554777	LHX2	ENST00000499579.1|RP11-422N16.3|ENSG00000248050.1|Uncharacterized protein
hg19_v2_chrX_-_138724677_138724887	0.00553194	LHX2	ENST00000370573.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000338585.6|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000370576.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence
hg19_v2_chr6_+_123038689_123038707	0.00509472	LHX2	ENST00000354275.2|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta 	ENST00000368446.1|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta
hg19_v2_chr4_-_1670632_1670632	0.00500595	LHX2	ENST00000461064.1|FAM53A|ENSG00000174137.8|family with sequence similarity 53, member A
hg19_v2_chr2_+_145780739_145780759	0.00488467	LHX2	ENST00000597173.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000602108.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000420472.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr2_+_210517895_210518021	0.00408615	LHX2	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr10_-_14372870_14372944	0.00376333	LHX2	ENST00000357447.2|FRMD4A|ENSG00000151474.15|FERM domain containing 4A
hg19_v2_chr14_-_38036271_38036301	0.00358472	LHX2	ENST00000556024.1|RP11-356O9.2|ENSG00000259087.1|RP11-356O9.2
hg19_v2_chr3_-_100551141_100551158	0.00307364	LHX2	ENST00000478235.1|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein 	ENST00000471901.1|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein
hg19_v2_chr13_+_24844979_24844994	0.00293561	LHX2	ENST00000454083.1|SPATA13|ENSG00000182957.11|spermatogenesis associated 13
hg19_v2_chr8_-_19459993_19460011	0.00266729	LHX2	ENST00000454498.2|CSGALNACT1|ENSG00000147408.10|chondroitin sulfate N-acetylgalactosaminyltransferase 1 	ENST00000520003.1|CSGALNACT1|ENSG00000147408.10|chondroitin sulfate N-acetylgalactosaminyltransferase 1
hg19_v2_chr11_+_120973375_120973375	0.00201363	LHX2	ENST00000264037.2|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr7_-_99717463_99717483	0.00194858	LHX2	ENST00000437822.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr1_+_41448820_41448833	0.00182772	LHX2	ENST00000372616.1|CTPS1|ENSG00000171793.9|CTP synthase 1
hg19_v2_chr16_+_88636875_88636886	0.00173134	LHX2	ENST00000569435.1|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chr5_+_179921344_179921423	0.00140615	LHX2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr11_+_31391381_31391426	0.00126491	LHX2	ENST00000465995.1|DNAJC24|ENSG00000170946.10|DnaJ (Hsp40) homolog, subfamily C, member 24 	ENST00000536040.1|DNAJC24|ENSG00000170946.10|DnaJ (Hsp40) homolog, subfamily C, member 24
hg19_v2_chr10_-_90712520_90712536	0.00122961	LHX2	ENST00000224784.6|ACTA2|ENSG00000107796.8|actin, alpha 2, smooth muscle, aorta
hg19_v2_chr12_-_49245916_49245932	0.00115504	LHX2	ENST00000552512.1|DDX23|ENSG00000174243.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 	ENST00000551468.1|DDX23|ENSG00000174243.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
hg19_v2_chr8_+_92082424_92082597	0.000857349	LHX2	ENST00000285420.4|OTUD6B|ENSG00000155100.6|OTU domain containing 6B 	ENST00000404789.3|OTUD6B|ENSG00000155100.6|OTU domain containing 6B
hg19_v2_chr1_+_84630574_84630602	0.000489901	LHX2	ENST00000413538.1|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta 	ENST00000417530.1|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
