hg19_v2_chr12_-_91546926_91546972	0.181896	HOXD9	ENST00000550758.1|DCN|ENSG00000011465.12|decorin
hg19_v2_chr9_-_75488984_75489052	0.164761	HOXD9	ENST00000423171.1|RP11-151D14.1|ENSG00000236849.1|RP11-151D14.1	ENST00000449235.1|RP11-151D14.1|ENSG00000236849.1|RP11-151D14.1	ENST00000453787.1|RP11-151D14.1|ENSG00000236849.1|RP11-151D14.1
hg19_v2_chr6_-_138833630_138833677	0.153006	HOXD9	ENST00000533765.1|NHSL1|ENSG00000135540.7|NHS-like 1
hg19_v2_chr3_+_195413160_195413288	0.151694	HOXD9	ENST00000599448.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969
hg19_v2_chr4_+_39640787_39640834	0.150212	HOXD9	ENST00000532680.1|RP11-539G18.2|ENSG00000255458.1|RP11-539G18.2
hg19_v2_chr4_-_76944621_76944671	0.148523	HOXD9	ENST00000306602.1|CXCL10|ENSG00000169245.4|chemokine (C-X-C motif) ligand 10
hg19_v2_chr13_-_44735393_44735393	0.146178	HOXD9	ENST00000400419.1|SMIM2|ENSG00000139656.5|small integral membrane protein 2
hg19_v2_chr3_-_195310802_195310818	0.13755	HOXD9	ENST00000421243.1|APOD|ENSG00000189058.4|apolipoprotein D 	ENST00000453131.1|APOD|ENSG00000189058.4|apolipoprotein D
hg19_v2_chr1_+_95616933_95616933	0.135384	HOXD9	ENST00000604203.1|RP11-57H12.6|ENSG00000271092.1|TMEM56-RWDD3 readthrough
hg19_v2_chr5_-_65018834_65018863	0.133249	HOXD9	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr7_-_130353553_130353598	0.124449	HOXD9	ENST00000330992.7|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2 	ENST00000445977.2|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2
hg19_v2_chr19_-_54618650_54618688	0.120599	HOXD9	ENST00000391757.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr12_-_11002063_11002081	0.118108	HOXD9	ENST00000544994.1|PRR4|ENSG00000111215.7|proline rich 4 (lacrimal) 	ENST00000228811.4|PRR4|ENSG00000111215.7|proline rich 4 (lacrimal) 	ENST00000540107.1|PRR4|ENSG00000111215.7|proline rich 4 (lacrimal)
hg19_v2_chr2_-_191115229_191115258	0.117824	HOXD9	ENST00000409820.2|HIBCH|ENSG00000198130.10|3-hydroxyisobutyryl-CoA hydrolase 	ENST00000410045.1|HIBCH|ENSG00000198130.10|3-hydroxyisobutyryl-CoA hydrolase
hg19_v2_chr17_-_46690839_46690884	0.114673	HOXD9	ENST00000498634.2|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr1_-_238108575_238108575	0.113327	HOXD9	ENST00000604646.1|MTRNR2L11|ENSG00000270188.1|MT-RNR2-like 11 (pseudogene)
hg19_v2_chr5_-_119669160_119669197	0.10271	HOXD9	ENST00000514240.1|CTC-552D5.1|ENSG00000251293.1|CTC-552D5.1
hg19_v2_chr9_-_138391692_138391741	0.0947262	HOXD9	ENST00000429260.2|C9orf116|ENSG00000160345.8|chromosome 9 open reading frame 116
hg19_v2_chr5_+_135496675_135496725	0.0940593	HOXD9	ENST00000507637.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr10_-_94301107_94301111	0.0937651	HOXD9	ENST00000436178.1|IDE|ENSG00000119912.11|insulin-degrading enzyme
hg19_v2_chr17_+_58018269_58018269	0.0929954	HOXD9	ENST00000591035.1|RP11-178C3.1|ENSG00000267318.1|Uncharacterized protein
hg19_v2_chr17_+_61151306_61151320	0.0914212	HOXD9	ENST00000580068.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000580466.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr15_+_49715449_49715464	0.0884341	HOXD9	ENST00000560979.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr6_-_10115007_10115007	0.0884102	HOXD9	ENST00000485268.1|OFCC1|ENSG00000181355.16|orofacial cleft 1 candidate 1
hg19_v2_chr6_-_31632962_31632997	0.0808388	HOXD9	ENST00000456540.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1 	ENST00000445768.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1
hg19_v2_chr5_+_177435986_177435986	0.078955	HOXD9	ENST00000398106.2|FAM153C|ENSG00000204677.6|family with sequence similarity 153, member C
hg19_v2_chr11_+_112047087_112047123	0.0789337	HOXD9	ENST00000526088.1|BCO2|ENSG00000197580.7|beta-carotene oxygenase 2 	ENST00000532593.1|BCO2|ENSG00000197580.7|beta-carotene oxygenase 2 	ENST00000531169.1|BCO2|ENSG00000197580.7|beta-carotene oxygenase 2
hg19_v2_chr17_+_44679808_44679808	0.0784098	HOXD9	ENST00000571172.1|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr12_-_8765446_8765468	0.0758841	HOXD9	ENST00000537228.1|AICDA|ENSG00000111732.6|activation-induced cytidine deaminase 	ENST00000229335.6|AICDA|ENSG00000111732.6|activation-induced cytidine deaminase
hg19_v2_chr3_+_107364769_107364793	0.0758149	HOXD9	ENST00000449271.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000425868.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000449213.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr1_+_45140400_45140427	0.075302	HOXD9	ENST00000453711.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228
hg19_v2_chr5_-_78808617_78808653	0.0751804	HOXD9	ENST00000282260.6|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila) 	ENST00000508576.1|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila) 	ENST00000535690.1|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila)
hg19_v2_chr4_+_169633310_169633344	0.0735173	HOXD9	ENST00000510998.1|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein
hg19_v2_chr12_+_75728419_75728476	0.0727301	HOXD9	ENST00000378695.4|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1 	ENST00000312442.2|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1
hg19_v2_chrX_+_71401570_71401644	0.0713748	HOXD9	ENST00000496835.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000446576.1|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr2_-_55647057_55647082	0.0711948	HOXD9	ENST00000436346.1|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr12_-_15104040_15104114	0.0694935	HOXD9	ENST00000541644.1|ARHGDIB|ENSG00000111348.4|Rho GDP dissociation inhibitor (GDI) beta 	ENST00000545895.1|ARHGDIB|ENSG00000111348.4|Rho GDP dissociation inhibitor (GDI) beta
hg19_v2_chr12_-_95510743_95510753	0.0688935	HOXD9	ENST00000551521.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr18_+_21452804_21452910	0.0683661	HOXD9	ENST00000269217.6|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr2_+_109223595_109223617	0.0683416	HOXD9	ENST00000410093.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr8_-_25281747_25281779	0.0677801	HOXD9	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chr4_-_144826682_144826716	0.0675944	HOXD9	ENST00000358615.4|GYPE|ENSG00000197465.9|glycophorin E (MNS blood group) 	ENST00000437468.2|GYPE|ENSG00000197465.9|glycophorin E (MNS blood group)
hg19_v2_chr7_-_107880508_107880522	0.067018	HOXD9	ENST00000425651.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr3_+_182511266_182511308	0.0644132	HOXD9	ENST00000323116.5|ATP11B|ENSG00000058063.11|ATPase, class VI, type 11B 	ENST00000493826.1|ATP11B|ENSG00000058063.11|ATPase, class VI, type 11B
hg19_v2_chr4_+_186990298_186990342	0.0642398	HOXD9	ENST00000296795.3|TLR3|ENSG00000164342.8|toll-like receptor 3 	ENST00000513189.1|TLR3|ENSG00000164342.8|toll-like receptor 3
hg19_v2_chr5_+_158654712_158654727	0.0616251	HOXD9	ENST00000520323.1|CTB-11I22.2|ENSG00000253315.1|CTB-11I22.2
hg19_v2_chr2_+_109237717_109237729	0.0615792	HOXD9	ENST00000409441.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr5_+_125967372_125967417	0.0611184	HOXD9	ENST00000357147.3|C5orf48|ENSG00000196900.4|chromosome 5 open reading frame 48
hg19_v2_chr1_+_219347203_219347233	0.0609066	HOXD9	ENST00000366927.3|LYPLAL1|ENSG00000143353.7|lysophospholipase-like 1
hg19_v2_chr6_-_131321863_131321907	0.0599546	HOXD9	ENST00000528282.1|EPB41L2|ENSG00000079819.12|erythrocyte membrane protein band 4.1-like 2
hg19_v2_chr3_-_182703688_182703741	0.0599306	HOXD9	ENST00000466812.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000487822.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000460412.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000469954.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr3_-_107777208_107777236	0.0592228	HOXD9	ENST00000398258.3|CD47|ENSG00000196776.10|CD47 molecule
hg19_v2_chr19_-_5903714_5903809	0.0590151	HOXD9	ENST00000586349.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000585661.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000308961.4|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000592634.1|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000418389.2|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000252675.5|FUT5|ENSG00000130383.6|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)
hg19_v2_chr1_-_26231589_26231635	0.058768	HOXD9	ENST00000374291.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr12_-_21927736_21927768	0.0581643	HOXD9	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr2_+_191334212_191334242	0.058129	HOXD9	ENST00000444317.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000535751.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr13_-_81801115_81801122	0.0578205	HOXD9	ENST00000567258.1|LINC00564|ENSG00000260094.1|long intergenic non-protein coding RNA 564
hg19_v2_chr7_-_92146729_92146876	0.0577183	HOXD9	ENST00000541751.1|PEX1|ENSG00000127980.11|peroxisomal biogenesis factor 1
hg19_v2_chr12_-_122879969_122879982	0.0575032	HOXD9	ENST00000540304.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr9_+_70856397_70856397	0.0566634	HOXD9	ENST00000360171.6|CBWD3|ENSG00000196873.11|COBW domain containing 3
hg19_v2_chr12_-_118628350_118628371	0.0543507	HOXD9	ENST00000537952.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000537822.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr12_-_10601963_10602102	0.053823	HOXD9	ENST00000543893.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1
hg19_v2_chr12_+_41136144_41136158	0.0517919	HOXD9	ENST00000548005.1|CNTN1|ENSG00000018236.10|contactin 1 	ENST00000552248.1|CNTN1|ENSG00000018236.10|contactin 1
hg19_v2_chr7_-_35013217_35013217	0.0515347	HOXD9	ENST00000446375.1|DPY19L1|ENSG00000173852.9|dpy-19-like 1 (C. elegans)
hg19_v2_chr19_+_45843994_45844015	0.0514094	HOXD9	ENST00000391946.2|KLC3|ENSG00000104892.12|kinesin light chain 3
hg19_v2_chr19_+_52800410_52800454	0.051064	HOXD9	ENST00000595962.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000598016.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000334564.7|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000490272.1|ZNF480|ENSG00000198464.9|zinc finger protein 480
hg19_v2_chr1_-_95391315_95391357	0.0509131	HOXD9	ENST00000545882.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000415017.1|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr4_-_84035905_84035955	0.050785	HOXD9	ENST00000311507.4|PLAC8|ENSG00000145287.6|placenta-specific 8
hg19_v2_chr18_-_57027194_57027194	0.0507271	HOXD9	ENST00000251047.5|LMAN1|ENSG00000074695.5|lectin, mannose-binding, 1
hg19_v2_chr1_-_100643765_100643829	0.0500962	HOXD9	ENST00000370137.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000370138.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000342895.3|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39
hg19_v2_chr3_-_27498235_27498278	0.0498896	HOXD9	ENST00000295736.5|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000428386.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000428179.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr2_-_55646957_55647027	0.0496565	HOXD9	ENST00000263630.8|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr3_+_107364683_107364736	0.0480544	HOXD9	ENST00000413213.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr2_-_170430277_170430361	0.046825	HOXD9	ENST00000438035.1|FASTKD1|ENSG00000138399.13|FAST kinase domains 1 	ENST00000453929.2|FASTKD1|ENSG00000138399.13|FAST kinase domains 1
hg19_v2_chr14_-_31856397_31856489	0.0463395	HOXD9	ENST00000538864.2|HEATR5A|ENSG00000129493.10|HEAT repeat containing 5A 	ENST00000550366.1|HEATR5A|ENSG00000129493.10|HEAT repeat containing 5A
hg19_v2_chr15_+_49913175_49913178	0.0454547	HOXD9	ENST00000403028.3|DTWD1|ENSG00000104047.10|DTW domain containing 1
hg19_v2_chr14_+_20215587_20215587	0.0448108	HOXD9	ENST00000331723.1|OR4Q3|ENSG00000182652.1|olfactory receptor, family 4, subfamily Q, member 3
hg19_v2_chr10_+_115511213_115511272	0.0445643	HOXD9	ENST00000361048.1|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chr10_-_31146615_31146708	0.0444591	HOXD9	ENST00000444692.2|ZNF438|ENSG00000183621.11|zinc finger protein 438
hg19_v2_chr1_-_213020991_213020991	0.0442502	HOXD9	ENST00000332912.3|C1orf227|ENSG00000185523.6|chromosome 1 open reading frame 227
hg19_v2_chrX_-_10645724_10645735	0.0442483	HOXD9	ENST00000413894.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr7_+_77469439_77469497	0.0428006	HOXD9	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr12_-_118628315_118628348	0.0426286	HOXD9	ENST00000540561.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr3_+_107318157_107318172	0.0423041	HOXD9	ENST00000406780.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr17_-_67224812_67224826	0.0419524	HOXD9	ENST00000423818.2|ABCA10|ENSG00000154263.13|ATP-binding cassette, sub-family A (ABC1), member 10
hg19_v2_chr22_-_19466643_19466667	0.041283	HOXD9	ENST00000474226.1|UFD1L|ENSG00000070010.14|ubiquitin fusion degradation 1 like (yeast)
hg19_v2_chr4_-_100065440_100065463	0.0410462	HOXD9	ENST00000508393.1|ADH4|ENSG00000198099.4|alcohol dehydrogenase 4 (class II), pi polypeptide 	ENST00000265512.7|ADH4|ENSG00000198099.4|alcohol dehydrogenase 4 (class II), pi polypeptide
hg19_v2_chr2_-_170430366_170430390	0.040911	HOXD9	ENST00000453153.2|FASTKD1|ENSG00000138399.13|FAST kinase domains 1 	ENST00000445210.1|FASTKD1|ENSG00000138399.13|FAST kinase domains 1
hg19_v2_chr1_-_248005254_248005254	0.0402342	HOXD9	ENST00000355784.2|OR11L1|ENSG00000197591.2|olfactory receptor, family 11, subfamily L, member 1
hg19_v2_chr10_-_13523073_13523073	0.0396839	HOXD9	ENST00000440282.1|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr4_+_74606223_74606293	0.0389085	HOXD9	ENST00000307407.3|IL8|ENSG00000169429.6|interleukin 8 	ENST00000401931.1|IL8|ENSG00000169429.6|interleukin 8
hg19_v2_chr4_-_144940477_144940541	0.0387638	HOXD9	ENST00000513128.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000429670.2|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000502664.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group)
hg19_v2_chr7_+_117864708_117864798	0.0383082	HOXD9	ENST00000357099.4|ANKRD7|ENSG00000106013.8|ankyrin repeat domain 7 	ENST00000265224.4|ANKRD7|ENSG00000106013.8|ankyrin repeat domain 7 	ENST00000486422.1|ANKRD7|ENSG00000106013.8|ankyrin repeat domain 7 	ENST00000417525.1|ANKRD7|ENSG00000106013.8|ankyrin repeat domain 7
hg19_v2_chr18_+_3466248_3466312	0.0382851	HOXD9	ENST00000581029.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000581442.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000579007.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4
hg19_v2_chr3_-_116163830_116163855	0.0373689	HOXD9	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr4_-_120225600_120225600	0.0373262	HOXD9	ENST00000399075.4|C4orf3|ENSG00000164096.10|chromosome 4 open reading frame 3
hg19_v2_chr11_-_16430399_16430440	0.0371986	HOXD9	ENST00000528252.1|SOX6|ENSG00000110693.11|SRY (sex determining region Y)-box 6
hg19_v2_chr6_+_149539767_149539834	0.0368271	HOXD9	ENST00000606202.1|TAB2|ENSG00000055208.13|TGF-beta activated kinase 1/MAP3K7 binding protein 2 	ENST00000536230.1|TAB2|ENSG00000055208.13|TGF-beta activated kinase 1/MAP3K7 binding protein 2 	ENST00000445901.1|RP1-111D6.3|ENSG00000228408.1|RP1-111D6.3
hg19_v2_chr20_+_9146969_9147005	0.0359688	HOXD9	ENST00000416836.1|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chrX_+_123097014_123097033	0.0357957	HOXD9	ENST00000394478.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr2_+_135809835_135809874	0.0353928	HOXD9	ENST00000264158.8|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000539493.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000442034.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000425393.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic)
hg19_v2_chr19_-_56826157_56826294	0.0352277	HOXD9	ENST00000592509.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000592679.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000588442.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000593106.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000587492.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000254165.3|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A
hg19_v2_chr14_+_65878650_65878661	0.0349819	HOXD9	ENST00000555559.1|FUT8|ENSG00000033170.12|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)
hg19_v2_chr1_-_48937838_48937905	0.0346737	HOXD9	ENST00000371847.3|SPATA6|ENSG00000132122.7|spermatogenesis associated 6
hg19_v2_chr2_+_28824786_28824791	0.0341311	HOXD9	ENST00000541605.1|PLB1|ENSG00000163803.8|phospholipase B1
hg19_v2_chr12_+_19358228_19358259	0.0340517	HOXD9	ENST00000424268.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000543806.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr1_+_81771806_81771876	0.0338436	HOXD9	ENST00000370721.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370727.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370725.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370723.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370728.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370730.1|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr10_+_104613980_104613989	0.0336021	HOXD9	ENST00000339834.5|C10orf32|ENSG00000166275.11|chromosome 10 open reading frame 32
hg19_v2_chr14_-_38028689_38028726	0.0328005	HOXD9	ENST00000553425.1|RP11-356O9.2|ENSG00000259087.1|RP11-356O9.2
hg19_v2_chr8_-_66701319_66701330	0.0322337	HOXD9	ENST00000379419.4|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr2_-_128284020_128284091	0.0317051	HOXD9	ENST00000295321.4|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae) 	ENST00000455721.2|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae)
hg19_v2_chr5_-_96518907_96518997	0.0314636	HOXD9	ENST00000508447.1|RIOK2|ENSG00000058729.6|RIO kinase 2 	ENST00000283109.3|RIOK2|ENSG00000058729.6|RIO kinase 2
hg19_v2_chr15_-_75748115_75748126	0.0313537	HOXD9	ENST00000360439.4|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A
hg19_v2_chr20_+_19870167_19870225	0.0309	HOXD9	ENST00000440354.2|RIN2|ENSG00000132669.8|Ras and Rab interactor 2
hg19_v2_chr7_-_50633078_50633154	0.0305251	HOXD9	ENST00000444124.2|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase)
hg19_v2_chr11_+_107461804_107461882	0.030331	HOXD9	ENST00000531234.1|ELMOD1|ENSG00000110675.8|ELMO/CED-12 domain containing 1
hg19_v2_chr15_-_75748143_75748183	0.0300598	HOXD9	ENST00000568431.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000568309.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000568190.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000570115.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000564778.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A
hg19_v2_chr8_-_102181718_102181857	0.0299691	HOXD9	ENST00000565617.1|KB-1460A1.5|ENSG00000261087.1|KB-1460A1.5
hg19_v2_chr13_+_51483814_51483935	0.0294781	HOXD9	ENST00000336617.3|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B 	ENST00000422660.1|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B
hg19_v2_chr1_-_236046872_236046882	0.0291836	HOXD9	ENST00000536965.1|LYST|ENSG00000143669.9|lysosomal trafficking regulator
hg19_v2_chr22_+_19118321_19118321	0.0288442	HOXD9	ENST00000399635.2|TSSK2|ENSG00000206203.3|testis-specific serine kinase 2
hg19_v2_chr11_-_8986474_8986558	0.0281116	HOXD9	ENST00000525069.1|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B
hg19_v2_chr1_-_244006528_244006588	0.0281096	HOXD9	ENST00000336199.5|AKT3|ENSG00000117020.12|v-akt murine thymoma viral oncogene homolog 3 	ENST00000263826.5|AKT3|ENSG00000117020.12|v-akt murine thymoma viral oncogene homolog 3
hg19_v2_chr11_-_102401469_102401488	0.0278295	HOXD9	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr8_+_86089619_86089653	0.0273482	HOXD9	ENST00000256117.5|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding 	ENST00000416274.2|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr3_-_139396853_139396879	0.0273237	HOXD9	ENST00000406164.1|NMNAT3|ENSG00000163864.10|nicotinamide nucleotide adenylyltransferase 3 	ENST00000406824.1|NMNAT3|ENSG00000163864.10|nicotinamide nucleotide adenylyltransferase 3
hg19_v2_chr8_-_117886955_117887105	0.0271359	HOXD9	ENST00000297338.2|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr13_+_33160553_33160564	0.0270434	HOXD9	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr4_-_185395191_185395340	0.0267475	HOXD9	ENST00000510814.1|IRF2|ENSG00000168310.6|interferon regulatory factor 2 	ENST00000507523.1|IRF2|ENSG00000168310.6|interferon regulatory factor 2 	ENST00000506230.1|IRF2|ENSG00000168310.6|interferon regulatory factor 2
hg19_v2_chr14_+_62164340_62164443	0.0262604	HOXD9	ENST00000557538.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 	ENST00000539097.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
hg19_v2_chr11_-_104905840_104905977	0.0262282	HOXD9	ENST00000526568.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000393136.4|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000531166.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000534497.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000527979.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000446369.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000353247.5|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000528974.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000533400.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000525825.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000436863.3|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase
hg19_v2_chr2_-_175712270_175712316	0.0254215	HOXD9	ENST00000295497.7|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000444394.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr2_+_210444748_210444770	0.0249314	HOXD9	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr4_+_37455536_37455610	0.0246803	HOXD9	ENST00000381980.4|C4orf19|ENSG00000154274.10|chromosome 4 open reading frame 19 	ENST00000508175.1|C4orf19|ENSG00000154274.10|chromosome 4 open reading frame 19
hg19_v2_chr10_+_115614370_115614436	0.0244977	HOXD9	ENST00000369301.3|NHLRC2|ENSG00000196865.4|NHL repeat containing 2
hg19_v2_chr15_+_57998923_57998934	0.0243785	HOXD9	ENST00000380557.4|POLR2M|ENSG00000255529.3|polymerase (RNA) II (DNA directed) polypeptide M
hg19_v2_chr17_+_57233087_57233146	0.024232	HOXD9	ENST00000578777.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000577457.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000582995.1|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr9_+_20927764_20927855	0.0241589	HOXD9	ENST00000603044.1|FOCAD|ENSG00000188352.8|focadhesin 	ENST00000604254.1|FOCAD|ENSG00000188352.8|focadhesin
hg19_v2_chr2_-_225434538_225434545	0.0238438	HOXD9	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr7_+_16793160_16793160	0.0234034	HOXD9	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr1_+_44870866_44870960	0.0227563	HOXD9	ENST00000355387.2|RNF220|ENSG00000187147.13|ring finger protein 220 	ENST00000361799.2|RNF220|ENSG00000187147.13|ring finger protein 220
hg19_v2_chr1_+_45140360_45140399	0.0226253	HOXD9	ENST00000418644.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000458657.2|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000441519.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000535358.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000445071.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228
hg19_v2_chr9_+_96846740_96846767	0.0224268	HOXD9	ENST00000288976.3|PTPDC1|ENSG00000158079.10|protein tyrosine phosphatase domain containing 1
hg19_v2_chr16_-_21442874_21442874	0.0223267	HOXD9	ENST00000534903.1|NPIPB3|ENSG00000169246.12|nuclear pore complex interacting protein family, member B3
hg19_v2_chr9_-_123812542_123812560	0.022047	HOXD9	ENST00000223642.1|C5|ENSG00000106804.6|complement component 5
hg19_v2_chr1_+_78383813_78383829	0.0219586	HOXD9	ENST00000342754.5|NEXN|ENSG00000162614.14|nexilin (F actin binding protein)
hg19_v2_chr6_+_24775153_24775242	0.0219097	HOXD9	ENST00000356509.3|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor 	ENST00000230056.3|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor
hg19_v2_chr19_-_54619006_54619055	0.0214768	HOXD9	ENST00000391759.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr1_+_82165350_82165455	0.0212683	HOXD9	ENST00000359929.3|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chrX_-_68385354_68385369	0.0212532	HOXD9	ENST00000361478.1|PJA1|ENSG00000181191.11|praja ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr1_+_197881592_197881635	0.0212402	HOXD9	ENST00000367391.1|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000367390.3|LHX9|ENSG00000143355.11|LIM homeobox 9
hg19_v2_chr15_+_52155001_52155035	0.0212349	HOXD9	ENST00000544199.1|TMOD3|ENSG00000138594.8|tropomodulin 3 (ubiquitous)
hg19_v2_chr12_-_118797475_118797527	0.0210481	HOXD9	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr1_-_197036364_197036401	0.020918	HOXD9	ENST00000367412.1|F13B|ENSG00000143278.3|coagulation factor XIII, B polypeptide
hg19_v2_chr6_+_1312675_1312701	0.0204356	HOXD9	ENST00000296839.2|FOXQ1|ENSG00000164379.4|forkhead box Q1
hg19_v2_chrX_-_68385274_68385350	0.0196785	HOXD9	ENST00000374584.3|PJA1|ENSG00000181191.11|praja ring finger 1, E3 ubiquitin protein ligase 	ENST00000590146.1|PJA1|ENSG00000181191.11|praja ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr14_+_20528204_20528204	0.0195899	HOXD9	ENST00000315683.1|OR4L1|ENSG00000176246.1|olfactory receptor, family 4, subfamily L, member 1
hg19_v2_chr5_+_61874562_61874685	0.0194316	HOXD9	ENST00000334994.5|LRRC70|ENSG00000186105.7|leucine rich repeat containing 70 	ENST00000409534.1|IPO11|ENSG00000086200.12|importin 11
hg19_v2_chr15_-_49913126_49913158	0.0190628	HOXD9	ENST00000561064.1|FAM227B|ENSG00000166262.11|family with sequence similarity 227, member B 	ENST00000299338.6|FAM227B|ENSG00000166262.11|family with sequence similarity 227, member B
hg19_v2_chr1_-_48937821_48937832	0.0188423	HOXD9	ENST00000396199.3|SPATA6|ENSG00000132122.7|spermatogenesis associated 6
hg19_v2_chr5_+_112043186_112043225	0.0184939	HOXD9	ENST00000509732.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000457016.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000507379.1|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr1_-_241799232_241799232	0.0170796	HOXD9	ENST00000366553.1|CHML|ENSG00000203668.1|choroideremia-like (Rab escort protein 2)
hg19_v2_chr7_-_107204706_107204797	0.0170767	HOXD9	ENST00000393603.2|COG5|ENSG00000164597.9|component of oligomeric golgi complex 5
hg19_v2_chr3_+_158991025_158991083	0.0166685	HOXD9	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr6_-_52859968_52860149	0.0166269	HOXD9	ENST00000370959.1|GSTA4|ENSG00000170899.6|glutathione S-transferase alpha 4
hg19_v2_chr7_-_5998714_5998714	0.0165965	HOXD9	ENST00000539903.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas)
hg19_v2_chr4_+_71263599_71263668	0.0164086	HOXD9	ENST00000399575.2|PROL1|ENSG00000171199.5|proline rich, lacrimal 1
hg19_v2_chr1_+_109255279_109255279	0.0162503	HOXD9	ENST00000370017.3|FNDC7|ENSG00000143107.4|fibronectin type III domain containing 7
hg19_v2_chr20_-_20693131_20693268	0.0161196	HOXD9	ENST00000202677.7|RALGAPA2|ENSG00000188559.9|Ral GTPase activating protein, alpha subunit 2 (catalytic)
hg19_v2_chr3_-_139396801_139396847	0.0159887	HOXD9	ENST00000413939.2|NMNAT3|ENSG00000163864.10|nicotinamide nucleotide adenylyltransferase 3 	ENST00000339837.5|NMNAT3|ENSG00000163864.10|nicotinamide nucleotide adenylyltransferase 3 	ENST00000512391.1|NMNAT3|ENSG00000163864.10|nicotinamide nucleotide adenylyltransferase 3
hg19_v2_chr12_-_30887948_30887997	0.0159483	HOXD9	ENST00000433722.2|CAPRIN2|ENSG00000110888.13|caprin family member 2
hg19_v2_chr11_+_69924639_69924664	0.0158746	HOXD9	ENST00000538023.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel 	ENST00000398543.2|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr4_-_84035868_84035897	0.0155656	HOXD9	ENST00000426923.2|PLAC8|ENSG00000145287.6|placenta-specific 8 	ENST00000509973.1|PLAC8|ENSG00000145287.6|placenta-specific 8
hg19_v2_chrY_+_14958970_14958970	0.0152148	HOXD9	ENST00000453031.1|USP9Y|ENSG00000114374.8|ubiquitin specific peptidase 9, Y-linked
hg19_v2_chr7_-_6866401_6866401	0.0149522	HOXD9	ENST00000316731.8|CCZ1B|ENSG00000146574.11|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)
hg19_v2_chrX_+_118602363_118602397	0.0148657	HOXD9	ENST00000317881.8|SLC25A5|ENSG00000005022.5|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5
hg19_v2_chr14_+_81421355_81421387	0.0148131	HOXD9	ENST00000541158.2|TSHR|ENSG00000165409.11|thyroid stimulating hormone receptor
hg19_v2_chr2_+_210517895_210518021	0.0147385	HOXD9	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr8_-_90993869_90993920	0.0146468	HOXD9	ENST00000517772.1|NBN|ENSG00000104320.9|nibrin
hg19_v2_chr19_-_19739321_19739366	0.0143863	HOXD9	ENST00000588461.1|LPAR2|ENSG00000064547.9|lysophosphatidic acid receptor 2
hg19_v2_chr4_-_146859787_146859921	0.0142116	HOXD9	ENST00000508784.1|ZNF827|ENSG00000151612.11|zinc finger protein 827
hg19_v2_chr16_+_22518495_22518495	0.013917	HOXD9	ENST00000541154.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr10_+_98064085_98064163	0.0134109	HOXD9	ENST00000419175.1|DNTT|ENSG00000107447.4|DNA nucleotidylexotransferase 	ENST00000371174.2|DNTT|ENSG00000107447.4|DNA nucleotidylexotransferase
hg19_v2_chr11_-_128457446_128457461	0.0130768	HOXD9	ENST00000392668.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr10_-_115614127_115614176	0.0128418	HOXD9	ENST00000369305.1|DCLRE1A|ENSG00000198924.3|DNA cross-link repair 1A
hg19_v2_chr6_+_10528560_10528589	0.0126508	HOXD9	ENST00000379597.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr17_-_54893250_54893278	0.0126159	HOXD9	ENST00000397862.2|C17orf67|ENSG00000214226.4|chromosome 17 open reading frame 67
hg19_v2_chrX_-_130423240_130423288	0.012588	HOXD9	ENST00000370910.1|IGSF1|ENSG00000147255.13|immunoglobulin superfamily, member 1 	ENST00000370901.4|IGSF1|ENSG00000147255.13|immunoglobulin superfamily, member 1
hg19_v2_chrX_-_130423200_130423228	0.0122762	HOXD9	ENST00000361420.3|IGSF1|ENSG00000147255.13|immunoglobulin superfamily, member 1
hg19_v2_chr15_+_76352178_76352306	0.0120379	HOXD9	ENST00000388942.3|C15orf27|ENSG00000169758.8|chromosome 15 open reading frame 27
hg19_v2_chr6_-_39399087_39399150	0.0119843	HOXD9	ENST00000229913.5|KIF6|ENSG00000164627.13|kinesin family member 6 	ENST00000541946.1|KIF6|ENSG00000164627.13|kinesin family member 6 	ENST00000394362.1|KIF6|ENSG00000164627.13|kinesin family member 6
hg19_v2_chr20_-_39928756_39928766	0.011236	HOXD9	ENST00000432768.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3
hg19_v2_chr19_-_53466095_53466164	0.0110866	HOXD9	ENST00000391786.2|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000434371.2|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000357666.4|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000438970.2|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000270457.4|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000535506.1|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000444460.2|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000457013.2|ZNF816|ENSG00000180257.8|zinc finger protein 816
hg19_v2_chr11_+_69924679_69924704	0.0110684	HOXD9	ENST00000531604.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr1_+_50459990_50459990	0.0110305	HOXD9	ENST00000448346.1|AL645730.2|ENSG00000227839.1|AL645730.2
hg19_v2_chr12_-_10007448_10007448	0.0107534	HOXD9	ENST00000538152.1|CLEC2B|ENSG00000110852.4|C-type lectin domain family 2, member B
hg19_v2_chr2_-_136288113_136288301	0.010708	HOXD9	ENST00000401392.1|ZRANB3|ENSG00000121988.13|zinc finger, RAN-binding domain containing 3
hg19_v2_chr3_+_169539710_169539710	0.0105962	HOXD9	ENST00000340806.6|LRRIQ4|ENSG00000188306.6|leucine-rich repeats and IQ motif containing 4
hg19_v2_chr10_-_99030395_99030434	0.00973918	HOXD9	ENST00000355366.5|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000371027.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr14_+_92789498_92789537	0.00922093	HOXD9	ENST00000531433.1|SLC24A4|ENSG00000140090.13|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
hg19_v2_chr6_+_45390222_45390298	0.00909431	HOXD9	ENST00000359524.5|RUNX2|ENSG00000124813.16|runt-related transcription factor 2
hg19_v2_chr15_+_66797455_66797483	0.00904477	HOXD9	ENST00000446801.2|ZWILCH|ENSG00000174442.7|zwilch kinetochore protein
hg19_v2_chr20_-_52612468_52612547	0.0088172	HOXD9	ENST00000422805.1|BCAS1|ENSG00000064787.8|breast carcinoma amplified sequence 1
hg19_v2_chrX_-_130423386_130423403	0.00872902	HOXD9	ENST00000370903.3|IGSF1|ENSG00000147255.13|immunoglobulin superfamily, member 1
hg19_v2_chr6_+_63921351_63921386	0.00870232	HOXD9	ENST00000370659.1|FKBP1C|ENSG00000198225.4|FK506 binding protein 1C
hg19_v2_chr6_+_32812568_32812631	0.0084243	HOXD9	ENST00000414474.1|PSMB9|ENSG00000240065.3|proteasome (prosome, macropain) subunit, beta type, 9
hg19_v2_chr17_-_73389737_73389765	0.00811606	HOXD9	ENST00000392563.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2
hg19_v2_chr9_-_39239171_39239171	0.00802797	HOXD9	ENST00000358144.2|CNTNAP3|ENSG00000106714.13|contactin associated protein-like 3
hg19_v2_chr10_+_86184676_86184714	0.00792859	HOXD9	ENST00000543283.1|CCSER2|ENSG00000107771.11|coiled-coil serine-rich protein 2
hg19_v2_chr8_-_10512569_10512612	0.00783207	HOXD9	ENST00000382483.3|RP1L1|ENSG00000183638.5|retinitis pigmentosa 1-like 1
hg19_v2_chr5_+_140248518_140248689	0.00781079	HOXD9	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr5_-_111093167_111093252	0.00770755	HOXD9	ENST00000446294.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000419114.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr10_-_49459800_49459841	0.00663466	HOXD9	ENST00000305531.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr14_-_67955426_67955460	0.00632779	HOXD9	ENST00000554480.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr6_-_74231444_74231623	0.0061132	HOXD9	ENST00000331523.2|EEF1A1|ENSG00000156508.13|eukaryotic translation elongation factor 1 alpha 1 	ENST00000356303.2|EEF1A1|ENSG00000156508.13|eukaryotic translation elongation factor 1 alpha 1
hg19_v2_chr17_-_29645836_29645853	0.005951	HOXD9	ENST00000578584.1|CTD-2370N5.3|ENSG00000265118.1|CTD-2370N5.3
hg19_v2_chr2_+_33661382_33661445	0.00584872	HOXD9	ENST00000402538.3|RASGRP3|ENSG00000152689.13|RAS guanyl releasing protein 3 (calcium and DAG-regulated)
hg19_v2_chr19_-_51143075_51143143	0.00535798	HOXD9	ENST00000600079.1|SYT3|ENSG00000213023.5|synaptotagmin III 	ENST00000593901.1|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr13_+_46039037_46039126	0.00534283	HOXD9	ENST00000349995.5|COG3|ENSG00000136152.10|component of oligomeric golgi complex 3
hg19_v2_chr1_+_81106951_81107001	0.00500191	HOXD9	ENST00000443565.1|RP5-887A10.1|ENSG00000234184.1|RP5-887A10.1
hg19_v2_chr17_+_61086917_61086921	0.00498809	HOXD9	ENST00000424789.2|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000389520.4|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr15_+_48483736_48483962	0.00481	HOXD9	ENST00000417307.2|CTXN2|ENSG00000233932.3|cortexin 2 	ENST00000559641.1|SLC12A1|ENSG00000074803.13|solute carrier family 12 (sodium/potassium/chloride transporter), member 1
hg19_v2_chr1_-_146082633_146082765	0.00465384	HOXD9	ENST00000605317.1|NBPF11|ENSG00000152042.13|neuroblastoma breakpoint family, member 11 	ENST00000604938.1|NBPF11|ENSG00000152042.13|neuroblastoma breakpoint family, member 11 	ENST00000339388.5|NBPF11|ENSG00000152042.13|neuroblastoma breakpoint family, member 11
hg19_v2_chr3_-_100712292_100712338	0.00428271	HOXD9	ENST00000495063.1|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein 	ENST00000530539.1|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein
hg19_v2_chr15_-_90222610_90222634	0.00424716	HOXD9	ENST00000300055.5|PLIN1|ENSG00000166819.7|perilipin 1
hg19_v2_chr12_+_9144626_9144666	0.00398143	HOXD9	ENST00000543895.1|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1
hg19_v2_chrX_+_135730373_135730399	0.0035803	HOXD9	ENST00000370628.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr5_-_39274617_39274636	0.00357769	HOXD9	ENST00000510188.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr13_+_76413852_76413884	0.00350701	HOXD9	ENST00000533809.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr15_-_90222642_90222658	0.00339692	HOXD9	ENST00000430628.2|PLIN1|ENSG00000166819.7|perilipin 1
hg19_v2_chr22_-_36236265_36236481	0.00333366	HOXD9	ENST00000414461.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENST00000416721.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENST00000449924.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENST00000262829.7|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENST00000397305.3|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v2_chr12_+_19358192_19358212	0.00330478	HOXD9	ENST00000538305.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr14_+_62462541_62462541	0.00319657	HOXD9	ENST00000430451.2|SYT16|ENSG00000139973.11|synaptotagmin XVI
hg19_v2_chrX_-_109590174_109590203	0.00315944	HOXD9	ENST00000372054.1|GNG5P2|ENSG00000133136.3|guanine nucleotide binding protein (G protein), gamma 5 pseudogene 2
hg19_v2_chr11_-_46639436_46639466	0.00286765	HOXD9	ENST00000532281.1|HARBI1|ENSG00000180423.4|harbinger transposase derived 1
hg19_v2_chr3_-_139258521_139258671	0.00235049	HOXD9	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr12_-_15815626_15815681	0.00225865	HOXD9	ENST00000540613.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr2_+_114647504_114647557	0.00213526	HOXD9	ENST00000263238.2|ACTR3|ENSG00000115091.7|ARP3 actin-related protein 3 homolog (yeast)
hg19_v2_chr1_-_152196669_152196669	0.00212791	HOXD9	ENST00000368801.2|HRNR|ENSG00000197915.5|hornerin
hg19_v2_chr11_+_89867803_89867906	0.00207196	HOXD9	ENST00000321955.4|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000525171.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000375944.3|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr7_+_18536090_18536130	0.00165988	HOXD9	ENST00000441986.1|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr22_-_41682172_41682255	0.00130385	HOXD9	ENST00000356244.3|RANGAP1|ENSG00000100401.15|Ran GTPase activating protein 1
hg19_v2_chr2_+_234627424_234627444	0.000901139	HOXD9	ENST00000373409.3|UGT1A4|ENSG00000244474.1|UDP glucuronosyltransferase 1 family, polypeptide A4
hg19_v2_chr4_-_36245561_36245601	0.000446979	HOXD9	ENST00000506189.1|ARAP2|ENSG00000047365.7|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
hg19_v2_chr12_+_119772502_119772522	9.8659e-05	HOXD9	ENST00000536742.1|CCDC60|ENSG00000183273.2|coiled-coil domain containing 60 	ENST00000327554.2|CCDC60|ENSG00000183273.2|coiled-coil domain containing 60
