hg19_v2_chr6_-_26250835_26250874	0.253065	HOXD4	ENST00000446824.2|HIST1H3F|ENSG00000256316.1|histone cluster 1, H3f
hg19_v2_chr18_+_68002675_68002675	0.235222	HOXD4	ENST00000584919.1|RP11-41O4.1|ENSG00000266258.1|Uncharacterized protein
hg19_v2_chr2_-_99871570_99871745	0.215917	HOXD4	ENST00000333017.2|LYG2|ENSG00000185674.5|lysozyme G-like 2 	ENST00000409679.1|LYG2|ENSG00000185674.5|lysozyme G-like 2 	ENST00000423306.1|LYG2|ENSG00000185674.5|lysozyme G-like 2
hg19_v2_chr2_+_90198535_90198535	0.203641	HOXD4	ENST00000390276.2|IGKV1D-12|ENSG00000240834.1|immunoglobulin kappa variable 1D-12
hg19_v2_chr3_-_178103144_178103205	0.189963	HOXD4	ENST00000417383.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1	ENST00000418585.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1	ENST00000411727.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1	ENST00000439810.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1
hg19_v2_chr3_-_196987309_196987350	0.181907	HOXD4	ENST00000453607.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr1_+_149754227_149754246	0.181466	HOXD4	ENST00000444948.1|FCGR1A|ENSG00000150337.9|Fc fragment of IgG, high affinity Ia, receptor (CD64) 	ENST00000369168.4|FCGR1A|ENSG00000150337.9|Fc fragment of IgG, high affinity Ia, receptor (CD64)
hg19_v2_chr1_-_238108575_238108575	0.17944	HOXD4	ENST00000604646.1|MTRNR2L11|ENSG00000270188.1|MT-RNR2-like 11 (pseudogene)
hg19_v2_chr15_-_94614049_94614115	0.176884	HOXD4	ENST00000556447.1|CTD-3049M7.1|ENSG00000258754.3|CTD-3049M7.1	ENST00000555772.1|CTD-3049M7.1|ENSG00000258754.3|CTD-3049M7.1
hg19_v2_chr9_+_97562440_97562463	0.16498	HOXD4	ENST00000395357.2|C9orf3|ENSG00000148120.10|chromosome 9 open reading frame 3
hg19_v2_chr11_+_128563652_128563689	0.160907	HOXD4	ENST00000527786.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr4_-_89442940_89442940	0.143622	HOXD4	ENST00000527353.1|PIGY|ENSG00000255072.1|phosphatidylinositol glycan anchor biosynthesis, class Y
hg19_v2_chr17_+_9479944_9479965	0.121398	HOXD4	ENST00000396219.3|WDR16|ENSG00000166596.10|WD repeat domain 16 	ENST00000352665.5|WDR16|ENSG00000166596.10|WD repeat domain 16
hg19_v2_chr5_-_150727111_150727151	0.116782	HOXD4	ENST00000335244.4|SLC36A2|ENSG00000186335.4|solute carrier family 36 (proton/amino acid symporter), member 2 	ENST00000521967.1|SLC36A2|ENSG00000186335.4|solute carrier family 36 (proton/amino acid symporter), member 2
hg19_v2_chr2_+_196313239_196313256	0.115022	HOXD4	ENST00000413290.1|AC064834.1|ENSG00000224099.1|AC064834.1
hg19_v2_chr8_+_107738343_107738413	0.11472	HOXD4	ENST00000521592.1|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr7_-_137028534_137028611	0.113317	HOXD4	ENST00000348225.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr12_+_28605426_28605475	0.108897	HOXD4	ENST00000542801.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr9_-_128246769_128246780	0.108299	HOXD4	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr4_+_124571409_124571447	0.105499	HOXD4	ENST00000514823.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091 	ENST00000511919.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091 	ENST00000508111.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091
hg19_v2_chr1_-_234831899_234831901	0.104857	HOXD4	ENST00000442382.1|RP4-781K5.6|ENSG00000230628.1|RP4-781K5.6
hg19_v2_chr7_-_137028498_137028520	0.104328	HOXD4	ENST00000393083.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr3_-_4927447_4927479	0.101949	HOXD4	ENST00000449914.1|AC018816.3|ENSG00000235978.2|Uncharacterized protein
hg19_v2_chr1_+_22138758_22138856	0.0974393	HOXD4	ENST00000344642.2|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2 	ENST00000543870.1|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2
hg19_v2_chr21_-_27423339_27423352	0.0890662	HOXD4	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr3_-_11623804_11623865	0.0888685	HOXD4	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr14_-_54425475_54425500	0.0886255	HOXD4	ENST00000559642.1|BMP4|ENSG00000125378.11|bone morphogenetic protein 4
hg19_v2_chr4_-_105416039_105416065	0.0882076	HOXD4	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr12_-_118628315_118628348	0.0853393	HOXD4	ENST00000540561.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr3_+_69812877_69812962	0.0827081	HOXD4	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr2_-_190927447_190927466	0.0782081	HOXD4	ENST00000260950.4|MSTN|ENSG00000138379.4|myostatin
hg19_v2_chr5_+_101569696_101569696	0.0764928	HOXD4	ENST00000597120.1|AC008948.1|ENSG00000268424.1|AC008948.1
hg19_v2_chr2_+_176981307_176981307	0.0757793	HOXD4	ENST00000249501.4|HOXD10|ENSG00000128710.5|homeobox D10
hg19_v2_chr11_+_112041253_112041253	0.0745054	HOXD4	ENST00000532612.1|AP002884.3|ENSG00000272790.1|AP002884.3
hg19_v2_chr6_+_130339710_130339745	0.0736177	HOXD4	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr2_+_33701684_33701702	0.0705812	HOXD4	ENST00000442390.1|RASGRP3|ENSG00000152689.13|RAS guanyl releasing protein 3 (calcium and DAG-regulated)
hg19_v2_chr16_-_29910853_29910903	0.0703865	HOXD4	ENST00000308713.5|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2
hg19_v2_chr2_-_99279928_99279942	0.0693529	HOXD4	ENST00000414521.2|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr3_+_140981456_140981508	0.0683156	HOXD4	ENST00000504264.1|ACPL2|ENSG00000155893.7|acid phosphatase-like 2
hg19_v2_chr5_+_102200948_102201183	0.0676422	HOXD4	ENST00000511477.1|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000506006.1|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000509832.1|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr18_+_29027696_29027774	0.0655336	HOXD4	ENST00000257189.4|DSG3|ENSG00000134757.4|desmoglein 3
hg19_v2_chr2_+_179318295_179318295	0.0640187	HOXD4	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr10_+_69869237_69869264	0.0600603	HOXD4	ENST00000373675.3|MYPN|ENSG00000138347.11|myopalladin
hg19_v2_chr8_-_27941380_27941403	0.0583375	HOXD4	ENST00000413272.2|NUGGC|ENSG00000189233.7|nuclear GTPase, germinal center associated 	ENST00000341513.6|NUGGC|ENSG00000189233.7|nuclear GTPase, germinal center associated
hg19_v2_chr2_-_228497888_228498036	0.0579567	HOXD4	ENST00000264387.4|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83 	ENST00000409066.1|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83
hg19_v2_chr8_+_24151553_24151590	0.0571389	HOXD4	ENST00000265769.4|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000540823.1|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000397649.3|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr11_-_36310958_36310999	0.0568686	HOXD4	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr7_+_135611542_135611542	0.0567912	HOXD4	ENST00000416501.1|AC015987.2|ENSG00000236338.1|AC015987.2
hg19_v2_chr19_-_14064114_14064204	0.0553811	HOXD4	ENST00000585607.1|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000538517.2|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000587458.1|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000538371.2|PODNL1|ENSG00000132000.7|podocan-like 1
hg19_v2_chr1_+_67632083_67632169	0.0528582	HOXD4	ENST00000347310.5|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000371002.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr12_-_112279694_112279710	0.0498472	HOXD4	ENST00000443596.1|MAPKAPK5-AS1|ENSG00000234608.3|MAPKAPK5 antisense RNA 1 	ENST00000442119.1|MAPKAPK5-AS1|ENSG00000234608.3|MAPKAPK5 antisense RNA 1
hg19_v2_chr11_-_31531121_31531192	0.0494141	HOXD4	ENST00000532287.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000526776.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000534812.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000529749.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000278200.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000530023.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000533642.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
hg19_v2_chr15_+_84115868_84115980	0.0490121	HOXD4	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr5_-_10761206_10761421	0.0488374	HOXD4	ENST00000432074.2|DAP|ENSG00000112977.11|death-associated protein 	ENST00000230895.6|DAP|ENSG00000112977.11|death-associated protein
hg19_v2_chrX_-_92928557_92928613	0.0480934	HOXD4	ENST00000373079.3|NAP1L3|ENSG00000186310.9|nucleosome assembly protein 1-like 3 	ENST00000475430.2|NAP1L3|ENSG00000186310.9|nucleosome assembly protein 1-like 3
hg19_v2_chr16_+_84801852_84801877	0.0476968	HOXD4	ENST00000569925.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10 	ENST00000567526.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10
hg19_v2_chr11_-_64684672_64684722	0.0455774	HOXD4	ENST00000377264.3|ATG2A|ENSG00000110046.8|autophagy related 2A 	ENST00000421419.2|ATG2A|ENSG00000110046.8|autophagy related 2A
hg19_v2_chr1_+_214161854_214161892	0.0438949	HOXD4	ENST00000435016.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chrX_-_110655306_110655330	0.0437538	HOXD4	ENST00000371993.2|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr13_+_24144509_24144589	0.0435355	HOXD4	ENST00000248484.4|TNFRSF19|ENSG00000127863.11|tumor necrosis factor receptor superfamily, member 19
hg19_v2_chr19_+_50016610_50016658	0.0427036	HOXD4	ENST00000596975.1|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha
hg19_v2_chr19_+_48828788_48828865	0.0425538	HOXD4	ENST00000594198.1|EMP3|ENSG00000142227.6|epithelial membrane protein 3 	ENST00000597279.1|EMP3|ENSG00000142227.6|epithelial membrane protein 3 	ENST00000593437.1|EMP3|ENSG00000142227.6|epithelial membrane protein 3
hg19_v2_chr1_+_202385953_202385994	0.0415272	HOXD4	ENST00000466968.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr14_-_24911868_24911902	0.0414458	HOXD4	ENST00000554698.1|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1
hg19_v2_chr14_+_23067146_23067160	0.0400509	HOXD4	ENST00000428304.2|ABHD4|ENSG00000100439.6|abhydrolase domain containing 4
hg19_v2_chr1_+_144146808_144146812	0.0400483	HOXD4	ENST00000369190.5|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8 	ENST00000412624.2|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8 	ENST00000369365.3|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8
hg19_v2_chr3_+_142342228_142342236	0.0396661	HOXD4	ENST00000337777.3|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr8_-_124279627_124279627	0.0396007	HOXD4	ENST00000357082.4|ZHX1-C8ORF76|ENSG00000259305.1|ZHX1-C8ORF76 readthrough
hg19_v2_chr3_+_51575596_51575596	0.0395265	HOXD4	ENST00000409535.2|RAD54L2|ENSG00000164080.9|RAD54-like 2 (S. cerevisiae)
hg19_v2_chr3_+_63638372_63638390	0.0389054	HOXD4	ENST00000496807.1|SNTN|ENSG00000188817.3|sentan, cilia apical structure protein
hg19_v2_chr15_+_36887069_36887101	0.0385275	HOXD4	ENST00000566807.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000567389.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000562877.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41
hg19_v2_chr10_+_18629628_18629672	0.0371772	HOXD4	ENST00000377329.4|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr1_+_186798073_186798147	0.03683	HOXD4	ENST00000367466.3|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent) 	ENST00000442353.2|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent)
hg19_v2_chr2_-_27579842_27579907	0.0362313	HOXD4	ENST00000423998.1|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa 	ENST00000264720.3|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa
hg19_v2_chr14_+_23067166_23067219	0.0357804	HOXD4	ENST00000216327.6|ABHD4|ENSG00000100439.6|abhydrolase domain containing 4 	ENST00000542041.1|ABHD4|ENSG00000100439.6|abhydrolase domain containing 4
hg19_v2_chr12_+_16109519_16109568	0.0332347	HOXD4	ENST00000526530.1|DERA|ENSG00000023697.8|deoxyribose-phosphate aldolase (putative)
hg19_v2_chr1_-_101360331_101360373	0.0331493	HOXD4	ENST00000416479.1|EXTL2|ENSG00000162694.9|exostosin-like glycosyltransferase 2 	ENST00000370113.3|EXTL2|ENSG00000162694.9|exostosin-like glycosyltransferase 2
hg19_v2_chr17_-_64225508_64225539	0.0325878	HOXD4	ENST00000205948.6|APOH|ENSG00000091583.6|apolipoprotein H (beta-2-glycoprotein I)
hg19_v2_chr22_+_44427230_44427253	0.0325859	HOXD4	ENST00000444029.1|PARVB|ENSG00000188677.10|parvin, beta
hg19_v2_chr17_+_47448102_47448102	0.0324544	HOXD4	ENST00000576461.1|RP11-81K2.1|ENSG00000262039.1|Uncharacterized protein
hg19_v2_chr14_-_99947168_99947232	0.0322679	HOXD4	ENST00000331768.5|SETD3|ENSG00000183576.8|SET domain containing 3
hg19_v2_chr6_+_142468361_142468382	0.0316221	HOXD4	ENST00000367630.4|VTA1|ENSG00000009844.11|vesicle (multivesicular body) trafficking 1
hg19_v2_chr4_-_130014532_130014590	0.0311595	HOXD4	ENST00000506368.1|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1 	ENST00000439369.2|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1 	ENST00000503215.1|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1
hg19_v2_chr14_+_62164340_62164443	0.0305821	HOXD4	ENST00000557538.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 	ENST00000539097.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
hg19_v2_chr18_+_22040593_22040616	0.0303437	HOXD4	ENST00000256906.4|HRH4|ENSG00000134489.6|histamine receptor H4
hg19_v2_chr1_+_159750776_159750808	0.0299158	HOXD4	ENST00000368107.1|DUSP23|ENSG00000158716.4|dual specificity phosphatase 23
hg19_v2_chr1_-_231560790_231560790	0.028144	HOXD4	ENST00000366641.3|EGLN1|ENSG00000135766.8|egl-9 family hypoxia-inducible factor 1
hg19_v2_chr14_+_61449076_61449109	0.0278986	HOXD4	ENST00000526105.1|SLC38A6|ENSG00000139974.11|solute carrier family 38, member 6
hg19_v2_chr1_-_235814048_235814067	0.0274642	HOXD4	ENST00000450593.1|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4 	ENST00000366598.4|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr7_+_16793160_16793160	0.0265998	HOXD4	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr14_+_78174414_78174521	0.0265911	HOXD4	ENST00000557342.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000238688.5|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000557623.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000557431.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000556831.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000556375.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000553981.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein
hg19_v2_chr8_-_40200877_40200902	0.0265421	HOXD4	ENST00000521030.1|CTA-392C11.1|ENSG00000253802.1|CTA-392C11.1
hg19_v2_chr5_-_78809950_78810040	0.0263972	HOXD4	ENST00000334082.6|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila)
hg19_v2_chr2_-_31361543_31361592	0.0260332	HOXD4	ENST00000349752.5|GALNT14|ENSG00000158089.10|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
hg19_v2_chr5_+_52083730_52083821	0.025841	HOXD4	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr5_+_141346385_141346437	0.0253562	HOXD4	ENST00000513019.1|RNF14|ENSG00000013561.13|ring finger protein 14 	ENST00000356143.1|RNF14|ENSG00000013561.13|ring finger protein 14
hg19_v2_chr16_+_103816_103900	0.025245	HOXD4	ENST00000383018.3|SNRNP25|ENSG00000161981.6|small nuclear ribonucleoprotein 25kDa (U11/U12) 	ENST00000417493.1|SNRNP25|ENSG00000161981.6|small nuclear ribonucleoprotein 25kDa (U11/U12)
hg19_v2_chr6_-_44281043_44281091	0.0247979	HOXD4	ENST00000244571.4|AARS2|ENSG00000124608.4|alanyl-tRNA synthetase 2, mitochondrial
hg19_v2_chr5_-_179499108_179499147	0.0244249	HOXD4	ENST00000521389.1|RNF130|ENSG00000113269.9|ring finger protein 130
hg19_v2_chr12_-_39734783_39734860	0.0238505	HOXD4	ENST00000552961.1|KIF21A|ENSG00000139116.13|kinesin family member 21A
hg19_v2_chr20_+_18447771_18447771	0.0237568	HOXD4	ENST00000377603.4|POLR3F|ENSG00000132664.7|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
hg19_v2_chr22_-_29107919_29108032	0.0224848	HOXD4	ENST00000434810.1|CHEK2|ENSG00000183765.16|checkpoint kinase 2 	ENST00000456369.1|CHEK2|ENSG00000183765.16|checkpoint kinase 2
hg19_v2_chr22_-_30642728_30642754	0.022327	HOXD4	ENST00000403987.3|LIF|ENSG00000128342.4|leukemia inhibitory factor
hg19_v2_chr17_-_41132410_41132545	0.0222	HOXD4	ENST00000409446.3|PTGES3L|ENSG00000267060.1|prostaglandin E synthase 3 (cytosolic)-like 	ENST00000409399.1|PTGES3L-AARSD1|ENSG00000108825.13|PTGES3L-AARSD1 readthrough 	ENST00000421990.2|PTGES3L-AARSD1|ENSG00000108825.13|PTGES3L-AARSD1 readthrough 	ENST00000453594.1|PTGES3L|ENSG00000267060.1|prostaglandin E synthase 3 (cytosolic)-like
hg19_v2_chr8_-_102803163_102803211	0.02175	HOXD4	ENST00000523645.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000520346.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000220931.6|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522448.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522951.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522252.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000519098.1|NCALD|ENSG00000104490.13|neurocalcin delta
hg19_v2_chr3_-_18480260_18480269	0.0217408	HOXD4	ENST00000454909.2|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr17_+_41132564_41132600	0.0214021	HOXD4	ENST00000361677.1|RUNDC1|ENSG00000198863.3|RUN domain containing 1 	ENST00000589705.1|RUNDC1|ENSG00000198863.3|RUN domain containing 1
hg19_v2_chr5_+_68860949_68860949	0.0212285	HOXD4	ENST00000507595.1|GTF2H2C|ENSG00000183474.11|general transcription factor IIH, polypeptide 2C
hg19_v2_chr15_+_80364901_80364932	0.0204443	HOXD4	ENST00000560228.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559835.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559775.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558688.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560392.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560976.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558272.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558390.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr3_+_97483572_97483644	0.0198326	HOXD4	ENST00000335979.2|ARL6|ENSG00000113966.5|ADP-ribosylation factor-like 6 	ENST00000394206.1|ARL6|ENSG00000113966.5|ADP-ribosylation factor-like 6
hg19_v2_chr2_+_166095898_166095940	0.0197826	HOXD4	ENST00000424833.1|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit 	ENST00000375437.2|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit 	ENST00000357398.3|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit
hg19_v2_chr3_+_15045419_15045433	0.0197501	HOXD4	ENST00000406272.2|NR2C2|ENSG00000177463.11|nuclear receptor subfamily 2, group C, member 2
hg19_v2_chr1_+_109256067_109256067	0.0190647	HOXD4	ENST00000271311.2|FNDC7|ENSG00000143107.4|fibronectin type III domain containing 7
hg19_v2_chr1_-_28384598_28384680	0.0188831	HOXD4	ENST00000373864.1|EYA3|ENSG00000158161.11|eyes absent homolog 3 (Drosophila)
hg19_v2_chr10_-_17171817_17171830	0.0183991	HOXD4	ENST00000377833.4|CUBN|ENSG00000107611.10|cubilin (intrinsic factor-cobalamin receptor)
hg19_v2_chr4_-_39979576_39979588	0.0183436	HOXD4	ENST00000303538.8|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 	ENST00000503396.1|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
hg19_v2_chr2_+_234826016_234826050	0.0182323	HOXD4	ENST00000324695.4|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8 	ENST00000433712.2|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8
hg19_v2_chr1_+_109265033_109265033	0.0177025	HOXD4	ENST00000445274.1|FNDC7|ENSG00000143107.4|fibronectin type III domain containing 7
hg19_v2_chr8_-_42698433_42698486	0.0175248	HOXD4	ENST00000345117.2|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1 	ENST00000254250.3|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1
hg19_v2_chr12_+_112279782_112279871	0.0168065	HOXD4	ENST00000550735.2|MAPKAPK5|ENSG00000089022.9|mitogen-activated protein kinase-activated protein kinase 5
hg19_v2_chr4_+_71019903_71019914	0.0167405	HOXD4	ENST00000344526.5|C4orf40|ENSG00000187533.9|chromosome 4 open reading frame 40
hg19_v2_chr15_+_48483736_48483962	0.0167289	HOXD4	ENST00000417307.2|CTXN2|ENSG00000233932.3|cortexin 2 	ENST00000559641.1|SLC12A1|ENSG00000074803.13|solute carrier family 12 (sodium/potassium/chloride transporter), member 1
hg19_v2_chr13_-_24007815_24007872	0.0165622	HOXD4	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr18_+_32556892_32557026	0.0160948	HOXD4	ENST00000591734.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000413393.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000589180.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000587359.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr7_+_112063192_112063237	0.015082	HOXD4	ENST00000005558.4|IFRD1|ENSG00000006652.9|interferon-related developmental regulator 1
hg19_v2_chr1_+_84630645_84630652	0.0149059	HOXD4	ENST00000394839.2|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr3_+_158787041_158787074	0.0148389	HOXD4	ENST00000471575.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000476809.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000485419.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr15_+_55700741_55700774	0.0144266	HOXD4	ENST00000569691.1|C15orf65|ENSG00000261652.2|chromosome 15 open reading frame 65
hg19_v2_chr3_-_137851220_137851236	0.0137928	HOXD4	ENST00000236709.3|A4GNT|ENSG00000118017.3|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr15_-_56209306_56209344	0.013587	HOXD4	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr5_+_140762268_140762467	0.0135268	HOXD4	ENST00000518325.1|PCDHGA7|ENSG00000253537.1|protocadherin gamma subfamily A, 7
hg19_v2_chr5_+_66300446_66300463	0.0133179	HOXD4	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr2_+_234590556_234590584	0.0131267	HOXD4	ENST00000373426.3|UGT1A7|ENSG00000244122.2|UDP glucuronosyltransferase 1 family, polypeptide A7
hg19_v2_chr2_-_165424973_165425010	0.0130827	HOXD4	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr1_+_42846443_42846502	0.0124512	HOXD4	ENST00000410070.2|RIMKLA|ENSG00000177181.10|ribosomal modification protein rimK-like family member A 	ENST00000431473.3|RIMKLA|ENSG00000177181.10|ribosomal modification protein rimK-like family member A
hg19_v2_chr1_+_197237352_197237543	0.011933	HOXD4	ENST00000538660.1|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila) 	ENST00000367400.3|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila) 	ENST00000367399.2|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila)
hg19_v2_chr2_+_171034646_171034706	0.0117972	HOXD4	ENST00000409044.3|MYO3B|ENSG00000071909.14|myosin IIIB 	ENST00000408978.4|MYO3B|ENSG00000071909.14|myosin IIIB
hg19_v2_chr11_+_101983176_101983245	0.0116559	HOXD4	ENST00000524575.1|YAP1|ENSG00000137693.9|Yes-associated protein 1
hg19_v2_chr19_-_5903714_5903809	0.0115437	HOXD4	ENST00000586349.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000585661.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000308961.4|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000592634.1|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000418389.2|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000252675.5|FUT5|ENSG00000130383.6|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)
hg19_v2_chr6_+_53659746_53659817	0.0115235	HOXD4	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr12_+_12938541_12938600	0.0113988	HOXD4	ENST00000356591.4|APOLD1|ENSG00000178878.8|apolipoprotein L domain containing 1
hg19_v2_chr12_+_26348246_26348310	0.0112861	HOXD4	ENST00000422622.2|SSPN|ENSG00000123096.7|sarcospan
hg19_v2_chr17_-_26733179_26733237	0.0100272	HOXD4	ENST00000440501.1|SLC46A1|ENSG00000076351.8|solute carrier family 46 (folate transporter), member 1 	ENST00000321666.5|SLC46A1|ENSG00000076351.8|solute carrier family 46 (folate transporter), member 1
hg19_v2_chr17_-_7218631_7218711	0.00968888	HOXD4	ENST00000577040.2|GPS2|ENSG00000132522.11|G protein pathway suppressor 2 	ENST00000389167.5|GPS2|ENSG00000132522.11|G protein pathway suppressor 2 	ENST00000391950.3|GPS2|ENSG00000132522.11|G protein pathway suppressor 2
hg19_v2_chr6_-_53013620_53013644	0.00958041	HOXD4	ENST00000259803.7|GCM1|ENSG00000137270.10|glial cells missing homolog 1 (Drosophila)
hg19_v2_chr17_-_78450398_78450413	0.00951632	HOXD4	ENST00000306773.4|NPTX1|ENSG00000171246.5|neuronal pentraxin I
hg19_v2_chr3_-_149293990_149294039	0.00946664	HOXD4	ENST00000472417.1|WWTR1|ENSG00000018408.10|WW domain containing transcription regulator 1
hg19_v2_chr18_-_74839891_74839921	0.00932766	HOXD4	ENST00000581878.1|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr4_-_186570679_186570760	0.00911629	HOXD4	ENST00000451974.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr9_-_131790550_131790634	0.00903215	HOXD4	ENST00000372554.4|SH3GLB2|ENSG00000148341.13|SH3-domain GRB2-like endophilin B2 	ENST00000372564.3|SH3GLB2|ENSG00000148341.13|SH3-domain GRB2-like endophilin B2
hg19_v2_chr19_+_30433110_30433214	0.0089904	HOXD4	ENST00000542441.2|URI1|ENSG00000105176.13|URI1, prefoldin-like chaperone 	ENST00000392271.1|URI1|ENSG00000105176.13|URI1, prefoldin-like chaperone
hg19_v2_chr4_-_152149033_152149182	0.00833091	HOXD4	ENST00000514152.1|SH3D19|ENSG00000109686.12|SH3 domain containing 19
hg19_v2_chr2_-_166060571_166060582	0.00828147	HOXD4	ENST00000360093.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr4_-_138453606_138453673	0.00783476	HOXD4	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr14_-_24911971_24912015	0.00779549	HOXD4	ENST00000555365.1|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1 	ENST00000399395.3|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1
hg19_v2_chr2_-_176046391_176046445	0.00751665	HOXD4	ENST00000392541.3|ATP5G3|ENSG00000154518.5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) 	ENST00000409194.1|ATP5G3|ENSG00000154518.5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
hg19_v2_chr14_+_29236269_29236287	0.00733386	HOXD4	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr1_-_101360374_101360419	0.0071422	HOXD4	ENST00000535414.1|EXTL2|ENSG00000162694.9|exostosin-like glycosyltransferase 2
hg19_v2_chr4_-_46996424_46996424	0.00691601	HOXD4	ENST00000264318.3|GABRA4|ENSG00000109158.6|gamma-aminobutyric acid (GABA) A receptor, alpha 4
hg19_v2_chr1_-_9953295_9953320	0.00680243	HOXD4	ENST00000377258.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr1_-_190446759_190446774	0.00670526	HOXD4	ENST00000367462.3|BRINP3|ENSG00000162670.8|bone morphogenetic protein/retinoic acid inducible neural-specific 3
hg19_v2_chr5_+_179921344_179921423	0.00654379	HOXD4	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr2_+_32502952_32503025	0.0065237	HOXD4	ENST00000238831.4|YIPF4|ENSG00000119820.6|Yip1 domain family, member 4
hg19_v2_chr19_+_48828582_48828637	0.00648998	HOXD4	ENST00000270221.6|EMP3|ENSG00000142227.6|epithelial membrane protein 3 	ENST00000596315.1|EMP3|ENSG00000142227.6|epithelial membrane protein 3
hg19_v2_chr8_-_116504448_116504481	0.00622736	HOXD4	ENST00000518018.1|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr10_-_50970322_50970381	0.0061652	HOXD4	ENST00000374103.4|OGDHL|ENSG00000197444.5|oxoglutarate dehydrogenase-like
hg19_v2_chr14_+_90863327_90863356	0.00576684	HOXD4	ENST00000356978.4|CALM1|ENSG00000198668.6|calmodulin 1 (phosphorylase kinase, delta)
hg19_v2_chr5_-_110848189_110848240	0.00407066	HOXD4	ENST00000296632.3|STARD4|ENSG00000164211.8|StAR-related lipid transfer (START) domain containing 4 	ENST00000512160.1|STARD4|ENSG00000164211.8|StAR-related lipid transfer (START) domain containing 4 	ENST00000509887.1|STARD4|ENSG00000164211.8|StAR-related lipid transfer (START) domain containing 4
hg19_v2_chr2_+_110656005_110656005	0.00377815	HOXD4	ENST00000437679.2|LIMS3|ENSG00000256977.6|LIM and senescent cell antigen-like domains 3
hg19_v2_chr4_+_74347400_74347479	0.00354502	HOXD4	ENST00000226355.3|AFM|ENSG00000079557.3|afamin
hg19_v2_chr11_-_89224638_89224653	0.00349917	HOXD4	ENST00000535633.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000263317.4|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr17_-_60142609_60142657	0.00308712	HOXD4	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chrX_-_13835147_13835224	0.0028814	HOXD4	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr15_-_64386120_64386217	0.00249797	HOXD4	ENST00000300030.3|FAM96A|ENSG00000166797.6|family with sequence similarity 96, member A
hg19_v2_chr1_-_151762900_151762910	0.00248712	HOXD4	ENST00000440583.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr12_+_9066472_9066492	0.0018287	HOXD4	ENST00000538657.1|PHC1|ENSG00000111752.6|polyhomeotic homolog 1 (Drosophila)
hg19_v2_chr15_-_64385981_64386077	0.00150656	HOXD4	ENST00000557835.1|FAM96A|ENSG00000166797.6|family with sequence similarity 96, member A 	ENST00000380290.3|FAM96A|ENSG00000166797.6|family with sequence similarity 96, member A 	ENST00000559950.1|FAM96A|ENSG00000166797.6|family with sequence similarity 96, member A
hg19_v2_chr2_-_225434538_225434545	0.00130577	HOXD4	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr4_+_169418195_169418217	0.00107403	HOXD4	ENST00000261509.6|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein 	ENST00000335742.7|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein
hg19_v2_chr1_-_92952433_92952489	0.00103342	HOXD4	ENST00000294702.5|GFI1|ENSG00000162676.7|growth factor independent 1 transcription repressor
hg19_v2_chr16_+_24549014_24549082	0.000736034	HOXD4	ENST00000564314.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6 	ENST00000567686.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chr3_-_4508925_4508965	0.000477203	HOXD4	ENST00000534863.1|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000383843.5|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000458465.2|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000405420.2|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000272902.5|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1
hg19_v2_chr5_+_140743859_140743898	0.000452638	HOXD4	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chr10_+_48189612_48189612	0.000186253	HOXD4	ENST00000453919.1|AGAP9|ENSG00000198035.9|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
