hg19_v2_chr19_-_3557570_3557590	0.0703662	HOXD1	ENST00000355415.2|MFSD12|ENSG00000161091.8|major facilitator superfamily domain containing 12
hg19_v2_chr22_-_24951814_24951834	0.065195	HOXD1	ENST00000407973.2|GUCD1|ENSG00000138867.12|guanylyl cyclase domain containing 1
hg19_v2_chr15_-_55562451_55562456	0.0641061	HOXD1	ENST00000568803.1|RAB27A|ENSG00000069974.11|RAB27A, member RAS oncogene family
hg19_v2_chr12_-_118796971_118796986	0.0566823	HOXD1	ENST00000542902.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr7_-_73256838_73256870	0.0554166	HOXD1	ENST00000297873.4|WBSCR27|ENSG00000165171.6|Williams Beuren syndrome chromosome region 27
hg19_v2_chr2_+_135596180_135596193	0.0536748	HOXD1	ENST00000283054.4|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase 	ENST00000392928.1|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr2_+_11682790_11682851	0.0518482	HOXD1	ENST00000389825.3|GREB1|ENSG00000196208.9|growth regulation by estrogen in breast cancer 1 	ENST00000381483.2|GREB1|ENSG00000196208.9|growth regulation by estrogen in breast cancer 1
hg19_v2_chr20_-_50418947_50418964	0.0497985	HOXD1	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr16_+_53133070_53133081	0.0466006	HOXD1	ENST00000565832.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr14_+_74034310_74034345	0.0418058	HOXD1	ENST00000538782.1|ACOT2|ENSG00000119673.10|acyl-CoA thioesterase 2
hg19_v2_chr12_-_118797475_118797527	0.0401768	HOXD1	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr1_+_117544366_117544434	0.038303	HOXD1	ENST00000256652.4|CD101|ENSG00000134256.8|CD101 molecule 	ENST00000369470.1|CD101|ENSG00000134256.8|CD101 molecule
hg19_v2_chr5_+_67535647_67535726	0.0374335	HOXD1	ENST00000520675.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr14_+_20187174_20187174	0.0366396	HOXD1	ENST00000557414.1|OR4N2|ENSG00000176294.3|olfactory receptor, family 4, subfamily N, member 2
hg19_v2_chr20_-_50418972_50419029	0.0334231	HOXD1	ENST00000395997.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr19_+_50016610_50016658	0.031896	HOXD1	ENST00000596975.1|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha
hg19_v2_chr3_-_126327398_126327398	0.0318645	HOXD1	ENST00000383572.2|TXNRD3NB|ENSG00000206483.4|thioredoxin reductase 3 neighbor
hg19_v2_chr11_+_101918153_101918198	0.0315193	HOXD1	ENST00000434758.2|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70 	ENST00000526781.1|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70 	ENST00000534360.1|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70
hg19_v2_chr4_+_86748898_86748936	0.0304975	HOXD1	ENST00000509300.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr20_+_43990576_43990596	0.0281726	HOXD1	ENST00000372727.1|SYS1|ENSG00000204070.5|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) 	ENST00000414310.1|SYS1|ENSG00000204070.5|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
hg19_v2_chr5_+_148737562_148737621	0.0279316	HOXD1	ENST00000274569.4|PCYOX1L|ENSG00000145882.6|prenylcysteine oxidase 1 like
hg19_v2_chr7_-_55620433_55620545	0.0276134	HOXD1	ENST00000418904.1|VOPP1|ENSG00000154978.8|vesicular, overexpressed in cancer, prosurvival protein 1
hg19_v2_chr2_+_135596106_135596137	0.026903	HOXD1	ENST00000356140.5|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr7_+_99717230_99717321	0.0253324	HOXD1	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr7_-_99716940_99716943	0.02423	HOXD1	ENST00000440225.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr15_+_58702742_58702777	0.0219748	HOXD1	ENST00000356113.6|LIPC|ENSG00000166035.6|lipase, hepatic 	ENST00000414170.3|LIPC|ENSG00000166035.6|lipase, hepatic
hg19_v2_chr4_-_74486109_74486166	0.02154	HOXD1	ENST00000395777.2|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6
hg19_v2_chr11_+_47293795_47293821	0.0214322	HOXD1	ENST00000422579.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr9_-_5339873_5339881	0.0208084	HOXD1	ENST00000223862.1|RLN1|ENSG00000107018.6|relaxin 1 	ENST00000223858.4|RLN1|ENSG00000107018.6|relaxin 1
hg19_v2_chr7_+_37723420_37723446	0.0196228	HOXD1	ENST00000476620.1|EPDR1|ENSG00000086289.7|ependymin related 1
hg19_v2_chr4_-_25865159_25865382	0.01875	HOXD1	ENST00000502949.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000264868.5|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000513691.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000514872.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
hg19_v2_chr20_-_50419055_50419066	0.018674	HOXD1	ENST00000217086.4|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr11_-_62521614_62521660	0.0185116	HOXD1	ENST00000527994.1|ZBTB3|ENSG00000185670.7|zinc finger and BTB domain containing 3 	ENST00000394807.3|ZBTB3|ENSG00000185670.7|zinc finger and BTB domain containing 3
hg19_v2_chr7_+_37723450_37723475	0.0183392	HOXD1	ENST00000447769.1|GPR141|ENSG00000187037.4|G protein-coupled receptor 141
hg19_v2_chr4_-_69111401_69111438	0.0183206	HOXD1	ENST00000332644.5|TMPRSS11B|ENSG00000185873.7|transmembrane protease, serine 11B
hg19_v2_chr4_-_74486217_74486273	0.0178593	HOXD1	ENST00000335049.5|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6 	ENST00000307439.5|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6
hg19_v2_chr4_+_71019903_71019914	0.0174714	HOXD1	ENST00000344526.5|C4orf40|ENSG00000187533.9|chromosome 4 open reading frame 40
hg19_v2_chr7_-_99716952_99717021	0.0167224	HOXD1	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr10_-_27529486_27529497	0.0163969	HOXD1	ENST00000375888.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr12_+_29376673_29376683	0.0154927	HOXD1	ENST00000547116.1|FAR2|ENSG00000064763.6|fatty acyl CoA reductase 2
hg19_v2_chr13_-_36050819_36050834	0.014353	HOXD1	ENST00000379919.4|MAB21L1|ENSG00000180660.6|mab-21-like 1 (C. elegans)
hg19_v2_chrX_-_19504642_19504642	0.014309	HOXD1	ENST00000469203.2|MAP3K15|ENSG00000180815.10|mitogen-activated protein kinase kinase kinase 15
hg19_v2_chr12_+_29376592_29376620	0.0141755	HOXD1	ENST00000182377.4|FAR2|ENSG00000064763.6|fatty acyl CoA reductase 2
hg19_v2_chr10_-_4285923_4286104	0.0138289	HOXD1	ENST00000418372.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702 	ENST00000608792.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702
hg19_v2_chr17_+_57233087_57233146	0.0135206	HOXD1	ENST00000578777.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000577457.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000582995.1|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr2_+_228736335_228736397	0.0129434	HOXD1	ENST00000440997.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1 	ENST00000545118.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr4_-_119759795_119759833	0.0129332	HOXD1	ENST00000419654.2|SEC24D|ENSG00000150961.10|SEC24 family member D
hg19_v2_chr12_+_28410128_28410133	0.0125491	HOXD1	ENST00000381259.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91 	ENST00000381256.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr12_-_10022735_10022735	0.0124667	HOXD1	ENST00000228438.2|CLEC2B|ENSG00000110852.4|C-type lectin domain family 2, member B
hg19_v2_chr12_-_23737534_23737550	0.0116308	HOXD1	ENST00000396007.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr10_+_99205894_99205954	0.011624	HOXD1	ENST00000370854.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000393760.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000414567.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370846.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chr22_-_24951888_24951910	0.0116144	HOXD1	ENST00000404664.3|GUCD1|ENSG00000138867.12|guanylyl cyclase domain containing 1
hg19_v2_chr4_+_113568207_113568367	0.0113917	HOXD1	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr8_-_49834299_49834446	0.0113422	HOXD1	ENST00000396822.1|SNAI2|ENSG00000019549.4|snail family zinc finger 2
hg19_v2_chr8_-_49833978_49833996	0.0112527	HOXD1	ENST00000020945.1|SNAI2|ENSG00000019549.4|snail family zinc finger 2
hg19_v2_chr14_+_32798462_32798539	0.0100852	HOXD1	ENST00000280979.4|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr11_-_26593649_26593670	0.00983346	HOXD1	ENST00000455601.2|MUC15|ENSG00000169550.8|mucin 15, cell surface associated
hg19_v2_chr2_+_187371440_187371567	0.00902824	HOXD1	ENST00000445547.1|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr17_-_27418537_27418537	0.00882618	HOXD1	ENST00000408971.2|TIAF1|ENSG00000221995.4|TGFB1-induced anti-apoptotic factor 1
hg19_v2_chr7_+_133812052_133812122	0.00766258	HOXD1	ENST00000285928.2|LRGUK|ENSG00000155530.2|leucine-rich repeats and guanylate kinase domain containing
hg19_v2_chr10_+_99205959_99205981	0.00747165	HOXD1	ENST00000352634.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000353979.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370842.2|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000345745.5|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chr5_-_20575959_20575997	0.007426	HOXD1	ENST00000507958.1|CDH18|ENSG00000145526.7|cadherin 18, type 2
hg19_v2_chr22_+_24951949_24951980	0.00620863	HOXD1	ENST00000402849.1|SNRPD3|ENSG00000100028.7|small nuclear ribonucleoprotein D3 polypeptide 18kDa
hg19_v2_chr9_+_124329336_124329406	0.00560941	HOXD1	ENST00000394340.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000436835.1|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000259371.2|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr12_+_15699286_15699354	0.00461294	HOXD1	ENST00000442921.2|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O 	ENST00000542557.1|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O 	ENST00000445537.2|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O 	ENST00000544244.1|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O
hg19_v2_chr12_-_22063787_22063912	0.00361497	HOXD1	ENST00000544039.1|ABCC9|ENSG00000069431.6|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
hg19_v2_chr10_+_18549645_18549698	0.0033903	HOXD1	ENST00000396576.2|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr15_-_37393406_37393528	0.00330894	HOXD1	ENST00000338564.5|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000558313.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000340545.5|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr11_-_102651343_102651365	0.00328338	HOXD1	ENST00000279441.4|MMP10|ENSG00000166670.5|matrix metallopeptidase 10 (stromelysin 2) 	ENST00000539681.1|MMP10|ENSG00000166670.5|matrix metallopeptidase 10 (stromelysin 2)
hg19_v2_chr7_-_81399355_81399373	0.0031037	HOXD1	ENST00000457544.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr12_-_118796910_118796943	0.00271395	HOXD1	ENST00000541186.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000539872.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr1_-_190446759_190446774	0.00260691	HOXD1	ENST00000367462.3|BRINP3|ENSG00000162670.8|bone morphogenetic protein/retinoic acid inducible neural-specific 3
hg19_v2_chr14_+_32798547_32798606	0.0021103	HOXD1	ENST00000557354.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557102.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557272.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr13_+_78315348_78315360	0.00205889	HOXD1	ENST00000441784.1|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1
hg19_v2_chr1_-_151431674_151431691	0.00192084	HOXD1	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr4_-_138453606_138453673	0.00176322	HOXD1	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr19_-_36001113_36001196	0.0014766	HOXD1	ENST00000434389.1|DMKN|ENSG00000161249.16|dermokine
hg19_v2_chr14_+_57671888_57671888	0.0013804	HOXD1	ENST00000391612.1|AL391152.1|ENSG00000212928.1|AL391152.1
hg19_v2_chr10_-_99205607_99205779	0.000354961	HOXD1	ENST00000477692.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000485122.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370886.5|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370885.4|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370902.3|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370884.5|EXOSC1|ENSG00000171311.8|exosome component 1
hg19_v2_chr1_-_92952433_92952489	0.000154185	HOXD1	ENST00000294702.5|GFI1|ENSG00000162676.7|growth factor independent 1 transcription repressor
hg19_v2_chr3_-_151034734_151034745	7.54267e-05	HOXD1	ENST00000260843.4|GPR87|ENSG00000138271.4|G protein-coupled receptor 87
