hg19_v2_chr2_-_86948245_86948245	0.0739793	GUAGUGU	ENST00000439940.2|CHMP3|ENSG00000115561.10|charged multivesicular body protein 3 	ENST00000604011.1|RNF103-CHMP3|ENSG00000249884.4|RNF103-CHMP3 readthrough
hg19_v2_chr19_-_18314836_18314884	0.0712002	GUAGUGU	ENST00000464076.3|RAB3A|ENSG00000105649.5|RAB3A, member RAS oncogene family 	ENST00000222256.4|RAB3A|ENSG00000105649.5|RAB3A, member RAS oncogene family
hg19_v2_chr11_+_9406169_9406210	0.0668024	GUAGUGU	ENST00000379719.3|IPO7|ENSG00000205339.5|importin 7 	ENST00000527431.1|IPO7|ENSG00000205339.5|importin 7
hg19_v2_chr2_+_153191706_153191751	0.0623515	GUAGUGU	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr1_+_28099683_28099694	0.0613704	GUAGUGU	ENST00000373943.4|STX12|ENSG00000117758.9|syntaxin 12
hg19_v2_chrX_-_135056216_135056227	0.0610571	GUAGUGU	ENST00000305963.2|MMGT1|ENSG00000169446.4|membrane magnesium transporter 1
hg19_v2_chr2_-_11484710_11484812	0.060354	GUAGUGU	ENST00000315872.6|ROCK2|ENSG00000134318.9|Rho-associated, coiled-coil containing protein kinase 2
hg19_v2_chr4_+_113066552_113066563	0.0599891	GUAGUGU	ENST00000309733.5|C4orf32|ENSG00000174749.5|chromosome 4 open reading frame 32
hg19_v2_chr3_+_20081515_20081570	0.0591137	GUAGUGU	ENST00000263754.4|KAT2B|ENSG00000114166.7|K(lysine) acetyltransferase 2B
hg19_v2_chr17_+_30771279_30771536	0.0537124	GUAGUGU	ENST00000261712.3|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENST00000578213.1|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENST00000457654.2|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENST00000579451.1|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
hg19_v2_chr1_-_197169672_197169672	0.0514393	GUAGUGU	ENST00000367405.4|ZBTB41|ENSG00000177888.7|zinc finger and BTB domain containing 41
hg19_v2_chr14_-_31495569_31495636	0.0503814	GUAGUGU	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr17_-_8534067_8534088	0.0486096	GUAGUGU	ENST00000360416.3|MYH10|ENSG00000133026.8|myosin, heavy chain 10, non-muscle 	ENST00000269243.4|MYH10|ENSG00000133026.8|myosin, heavy chain 10, non-muscle
hg19_v2_chr15_+_85523671_85523747	0.0479542	GUAGUGU	ENST00000310298.4|PDE8A|ENSG00000073417.10|phosphodiesterase 8A 	ENST00000557957.1|PDE8A|ENSG00000073417.10|phosphodiesterase 8A
hg19_v2_chr1_+_40627038_40627071	0.0473185	GUAGUGU	ENST00000372771.4|RLF|ENSG00000117000.8|rearranged L-myc fusion
hg19_v2_chr1_+_25071848_25071944	0.0467881	GUAGUGU	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr21_+_30671189_30671207	0.044039	GUAGUGU	ENST00000286800.3|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr12_-_44200052_44200136	0.0437675	GUAGUGU	ENST00000548315.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1 	ENST00000552521.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1 	ENST00000546662.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1 	ENST00000548403.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1 	ENST00000546506.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1
hg19_v2_chr1_+_24069642_24069646	0.0422291	GUAGUGU	ENST00000418390.2|TCEB3|ENSG00000011007.8|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)
hg19_v2_chr11_-_77532050_77532066	0.0409281	GUAGUGU	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr16_-_18937726_18937776	0.0404897	GUAGUGU	ENST00000389467.3|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase 	ENST00000446231.2|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr4_+_6642404_6642426	0.0400327	GUAGUGU	ENST00000507420.1|MRFAP1|ENSG00000179010.10|Morf4 family associated protein 1 	ENST00000382581.4|MRFAP1|ENSG00000179010.10|Morf4 family associated protein 1
hg19_v2_chr1_+_11072696_11072735	0.0398921	GUAGUGU	ENST00000240185.3|TARDBP|ENSG00000120948.11|TAR DNA binding protein 	ENST00000476201.1|TARDBP|ENSG00000120948.11|TAR DNA binding protein
hg19_v2_chr18_+_8609402_8609486	0.0393258	GUAGUGU	ENST00000329286.6|RAB12|ENSG00000206418.3|RAB12, member RAS oncogene family
hg19_v2_chr22_-_36784035_36784063	0.0371458	GUAGUGU	ENST00000216181.5|MYH9|ENSG00000100345.16|myosin, heavy chain 9, non-muscle
hg19_v2_chr1_-_29450399_29450447	0.0367374	GUAGUGU	ENST00000521452.1|TMEM200B|ENSG00000253304.1|transmembrane protein 200B
hg19_v2_chr10_-_60027642_60027705	0.0357629	GUAGUGU	ENST00000373935.3|IPMK|ENSG00000151151.5|inositol polyphosphate multikinase
hg19_v2_chr14_+_57735614_57735629	0.0357441	GUAGUGU	ENST00000261558.3|AP5M1|ENSG00000053770.7|adaptor-related protein complex 5, mu 1 subunit
hg19_v2_chr9_-_27573392_27573451	0.0349047	GUAGUGU	ENST00000380003.3|C9orf72|ENSG00000147894.10|chromosome 9 open reading frame 72
hg19_v2_chr1_+_94883931_94883980	0.0346951	GUAGUGU	ENST00000394233.2|ABCD3|ENSG00000117528.7|ATP-binding cassette, sub-family D (ALD), member 3 	ENST00000454898.2|ABCD3|ENSG00000117528.7|ATP-binding cassette, sub-family D (ALD), member 3 	ENST00000536817.1|ABCD3|ENSG00000117528.7|ATP-binding cassette, sub-family D (ALD), member 3
hg19_v2_chr4_+_52709229_52709345	0.0346321	GUAGUGU	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr10_+_5726764_5726911	0.0345908	GUAGUGU	ENST00000328090.5|FAM208B|ENSG00000108021.15|family with sequence similarity 208, member B 	ENST00000496681.1|FAM208B|ENSG00000108021.15|family with sequence similarity 208, member B
hg19_v2_chr14_+_103851712_103851878	0.0344826	GUAGUGU	ENST00000440884.3|MARK3|ENSG00000075413.13|MAP/microtubule affinity-regulating kinase 3 	ENST00000416682.2|MARK3|ENSG00000075413.13|MAP/microtubule affinity-regulating kinase 3 	ENST00000429436.2|MARK3|ENSG00000075413.13|MAP/microtubule affinity-regulating kinase 3 	ENST00000303622.9|MARK3|ENSG00000075413.13|MAP/microtubule affinity-regulating kinase 3
hg19_v2_chr15_-_52821247_52821295	0.034086	GUAGUGU	ENST00000399231.3|MYO5A|ENSG00000197535.10|myosin VA (heavy chain 12, myoxin) 	ENST00000399233.2|MYO5A|ENSG00000197535.10|myosin VA (heavy chain 12, myoxin)
hg19_v2_chr10_+_17686124_17686192	0.0338769	GUAGUGU	ENST00000377524.3|STAM|ENSG00000136738.10|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
hg19_v2_chr13_-_41240717_41240735	0.0334181	GUAGUGU	ENST00000379561.5|FOXO1|ENSG00000150907.6|forkhead box O1
hg19_v2_chr10_-_32345305_32345376	0.0328741	GUAGUGU	ENST00000302418.4|KIF5B|ENSG00000170759.10|kinesin family member 5B
hg19_v2_chr17_-_27278304_27278408	0.0327926	GUAGUGU	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr18_+_57567180_57567248	0.0324267	GUAGUGU	ENST00000316660.6|PMAIP1|ENSG00000141682.11|phorbol-12-myristate-13-acetate-induced protein 1 	ENST00000269518.9|PMAIP1|ENSG00000141682.11|phorbol-12-myristate-13-acetate-induced protein 1
hg19_v2_chr3_+_196295482_196295559	0.0320869	GUAGUGU	ENST00000440469.1|FBXO45|ENSG00000174013.7|F-box protein 45 	ENST00000311630.6|FBXO45|ENSG00000174013.7|F-box protein 45
hg19_v2_chrX_-_41782249_41782287	0.0306215	GUAGUGU	ENST00000442742.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000421587.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000378166.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000318588.9|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000361962.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr4_+_144257915_144258009	0.0305562	GUAGUGU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chrX_-_102942961_102943011	0.0305265	GUAGUGU	ENST00000434230.1|MORF4L2|ENSG00000123562.12|mortality factor 4 like 2 	ENST00000418819.1|MORF4L2|ENSG00000123562.12|mortality factor 4 like 2 	ENST00000360458.1|MORF4L2|ENSG00000123562.12|mortality factor 4 like 2
hg19_v2_chr1_-_184723942_184724047	0.0300747	GUAGUGU	ENST00000318130.8|EDEM3|ENSG00000116406.14|ER degradation enhancer, mannosidase alpha-like 3
hg19_v2_chr12_+_14518598_14518663	0.0292787	GUAGUGU	ENST00000261168.4|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000538511.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000545723.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000543189.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536444.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr10_-_27529716_27529756	0.0291341	GUAGUGU	ENST00000375897.3|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000396271.3|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr10_+_31608054_31608156	0.0290927	GUAGUGU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr7_+_6414128_6414185	0.0290838	GUAGUGU	ENST00000348035.4|RAC1|ENSG00000136238.13|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 	ENST00000356142.4|RAC1|ENSG00000136238.13|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
hg19_v2_chr3_-_123603137_123603203	0.028807	GUAGUGU	ENST00000360304.3|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000359169.1|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000346322.5|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000360772.3|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr2_+_198380289_198380305	0.0286216	GUAGUGU	ENST00000233892.4|MOB4|ENSG00000115540.10|MOB family member 4, phocein 	ENST00000409916.1|MOB4|ENSG00000115540.10|MOB family member 4, phocein
hg19_v2_chr15_+_66161871_66161893	0.0284974	GUAGUGU	ENST00000569896.1|RAB11A|ENSG00000103769.5|RAB11A, member RAS oncogene family
hg19_v2_chr8_+_61429416_61429502	0.0281281	GUAGUGU	ENST00000262646.7|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family 	ENST00000531289.1|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family
hg19_v2_chr7_-_151217001_151217019	0.0271884	GUAGUGU	ENST00000262187.5|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr10_+_98592009_98592061	0.0267681	GUAGUGU	ENST00000540664.1|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor 	ENST00000371103.3|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor
hg19_v2_chr6_-_136610911_136610990	0.0266992	GUAGUGU	ENST00000530767.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000527759.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000527536.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000529826.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000531224.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000353331.4|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1
hg19_v2_chr9_+_101867359_101867376	0.0263875	GUAGUGU	ENST00000374994.4|TGFBR1|ENSG00000106799.8|transforming growth factor, beta receptor 1
hg19_v2_chr6_+_13615554_13615601	0.0261258	GUAGUGU	ENST00000451315.2|NOL7|ENSG00000225921.2|nucleolar protein 7, 27kDa
hg19_v2_chr1_+_218519577_218519594	0.025918	GUAGUGU	ENST00000366930.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2 	ENST00000366929.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2
hg19_v2_chrX_-_80065146_80065250	0.0259134	GUAGUGU	ENST00000373275.4|BRWD3|ENSG00000165288.10|bromodomain and WD repeat domain containing 3
hg19_v2_chr12_-_101801505_101801598	0.0258562	GUAGUGU	ENST00000539055.1|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1 	ENST00000551688.1|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1 	ENST00000551671.1|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1 	ENST00000261636.8|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1
hg19_v2_chr15_+_101142722_101142816	0.0250942	GUAGUGU	ENST00000332783.7|ASB7|ENSG00000183475.8|ankyrin repeat and SOCS box containing 7 	ENST00000558747.1|ASB7|ENSG00000183475.8|ankyrin repeat and SOCS box containing 7 	ENST00000343276.4|ASB7|ENSG00000183475.8|ankyrin repeat and SOCS box containing 7
hg19_v2_chr2_+_187454749_187454808	0.0249095	GUAGUGU	ENST00000261023.3|ITGAV|ENSG00000138448.7|integrin, alpha V 	ENST00000374907.3|ITGAV|ENSG00000138448.7|integrin, alpha V
hg19_v2_chr5_-_90679145_90679176	0.0244381	GUAGUGU	ENST00000265138.3|ARRDC3|ENSG00000113369.4|arrestin domain containing 3
hg19_v2_chr18_-_23670546_23670605	0.0240593	GUAGUGU	ENST00000542743.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000545952.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000539849.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000415083.2|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18
hg19_v2_chr11_+_34642656_34642682	0.0239647	GUAGUGU	ENST00000257831.3|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000450654.2|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr1_-_91487013_91487070	0.0238822	GUAGUGU	ENST00000347275.5|ZNF644|ENSG00000122482.16|zinc finger protein 644 	ENST00000370440.1|ZNF644|ENSG00000122482.16|zinc finger protein 644
hg19_v2_chr12_+_110719032_110719113	0.0237633	GUAGUGU	ENST00000395494.2|ATP2A2|ENSG00000174437.12|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
hg19_v2_chr5_+_112043186_112043225	0.0235401	GUAGUGU	ENST00000509732.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000457016.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000507379.1|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr11_+_13299186_13299432	0.0233725	GUAGUGU	ENST00000527998.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000396441.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000533520.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529825.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389707.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000401424.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529388.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000530357.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403290.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000361003.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389708.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403510.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000482049.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like
hg19_v2_chr5_-_156486120_156486134	0.0232429	GUAGUGU	ENST00000522693.1|HAVCR1|ENSG00000113249.8|hepatitis A virus cellular receptor 1
hg19_v2_chrX_+_37208521_37208539	0.0231787	GUAGUGU	ENST00000378628.4|PRRG1|ENSG00000130962.13|proline rich Gla (G-carboxyglutamic acid) 1
hg19_v2_chr11_+_102188272_102188294	0.0230638	GUAGUGU	ENST00000532808.1|BIRC3|ENSG00000023445.9|baculoviral IAP repeat containing 3
hg19_v2_chr11_-_85780086_85780161	0.0229673	GUAGUGU	ENST00000532317.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein 	ENST00000528256.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein 	ENST00000526033.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein
hg19_v2_chr1_+_93913713_93913839	0.0228442	GUAGUGU	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr2_-_65357225_65357267	0.0227463	GUAGUGU	ENST00000398529.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409751.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000356214.7|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409892.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409784.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family
hg19_v2_chr6_+_53659746_53659817	0.0222201	GUAGUGU	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr14_-_81687197_81687280	0.0221269	GUAGUGU	ENST00000553612.1|GTF2A1|ENSG00000165417.7|general transcription factor IIA, 1, 19/37kDa
hg19_v2_chr9_-_80646374_80646374	0.0221069	GUAGUGU	ENST00000286548.4|GNAQ|ENSG00000156052.6|guanine nucleotide binding protein (G protein), q polypeptide
hg19_v2_chr5_-_39074479_39074515	0.0220657	GUAGUGU	ENST00000514735.1|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000296782.5|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000357387.3|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2
hg19_v2_chr2_+_42396472_42396563	0.0218812	GUAGUGU	ENST00000318522.5|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4 	ENST00000402711.2|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4
hg19_v2_chr1_-_86622421_86622460	0.0218747	GUAGUGU	ENST00000370571.2|COL24A1|ENSG00000171502.10|collagen, type XXIV, alpha 1
hg19_v2_chr5_+_145583156_145583180	0.0213084	GUAGUGU	ENST00000265271.5|RBM27|ENSG00000091009.6|RNA binding motif protein 27
hg19_v2_chr10_-_65225722_65225755	0.0210014	GUAGUGU	ENST00000399251.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr14_-_31676964_31677017	0.0205668	GUAGUGU	ENST00000553700.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr18_+_67956135_67956144	0.0203914	GUAGUGU	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr4_+_38869410_38869437	0.0201027	GUAGUGU	ENST00000358869.2|FAM114A1|ENSG00000197712.7|family with sequence similarity 114, member A1
hg19_v2_chr12_+_66217911_66218018	0.0198901	GUAGUGU	ENST00000403681.2|HMGA2|ENSG00000149948.9|high mobility group AT-hook 2
hg19_v2_chr1_-_205719295_205719404	0.019746	GUAGUGU	ENST00000367142.4|NUCKS1|ENSG00000069275.12|nuclear casein kinase and cyclin-dependent kinase substrate 1
hg19_v2_chr10_-_119806085_119806114	0.0192998	GUAGUGU	ENST00000355624.3|RAB11FIP2|ENSG00000107560.6|RAB11 family interacting protein 2 (class I)
hg19_v2_chr1_-_78148324_78148365	0.0188802	GUAGUGU	ENST00000370801.3|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000433749.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr4_-_129208940_129208976	0.0185276	GUAGUGU	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr5_-_32444828_32444872	0.0184797	GUAGUGU	ENST00000265069.8|ZFR|ENSG00000056097.11|zinc finger RNA binding protein
hg19_v2_chr2_+_135676381_135676435	0.0182525	GUAGUGU	ENST00000537343.1|CCNT2|ENSG00000082258.8|cyclin T2 	ENST00000295238.6|CCNT2|ENSG00000082258.8|cyclin T2 	ENST00000264157.5|CCNT2|ENSG00000082258.8|cyclin T2
hg19_v2_chr2_+_198365122_198365137	0.018076	GUAGUGU	ENST00000604458.1|HSPE1-MOB4|ENSG00000270757.1|HSPE1-MOB4 readthrough
hg19_v2_chr2_-_86790593_86790614	0.0177028	GUAGUGU	ENST00000263856.4|CHMP3|ENSG00000115561.10|charged multivesicular body protein 3 	ENST00000409225.2|CHMP3|ENSG00000115561.10|charged multivesicular body protein 3
hg19_v2_chr9_+_36190853_36190904	0.0174271	GUAGUGU	ENST00000433436.2|CLTA|ENSG00000122705.12|clathrin, light chain A 	ENST00000538225.1|CLTA|ENSG00000122705.12|clathrin, light chain A 	ENST00000540080.1|CLTA|ENSG00000122705.12|clathrin, light chain A
hg19_v2_chr11_+_70244510_70244696	0.0170067	GUAGUGU	ENST00000346329.3|CTTN|ENSG00000085733.11|cortactin 	ENST00000301843.8|CTTN|ENSG00000085733.11|cortactin 	ENST00000376561.3|CTTN|ENSG00000085733.11|cortactin
hg19_v2_chr15_+_38544476_38544574	0.0166292	GUAGUGU	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr13_+_49550015_49550070	0.0164833	GUAGUGU	ENST00000492622.2|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr2_+_9346892_9346948	0.0164825	GUAGUGU	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr11_+_58346584_58346607	0.0162557	GUAGUGU	ENST00000316059.6|ZFP91|ENSG00000186660.14|ZFP91 zinc finger protein
hg19_v2_chr19_+_16187085_16187119	0.0159692	GUAGUGU	ENST00000300933.4|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr6_+_34857019_34857117	0.0157402	GUAGUGU	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr2_-_61765315_61765422	0.0142571	GUAGUGU	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr6_-_134639180_134639220	0.0141214	GUAGUGU	ENST00000367858.5|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr1_+_78245303_78245351	0.013957	GUAGUGU	ENST00000370791.3|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A 	ENST00000443751.2|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A
hg19_v2_chr11_-_76381781_76381798	0.0138596	GUAGUGU	ENST00000260061.5|LRRC32|ENSG00000137507.7|leucine rich repeat containing 32 	ENST00000404995.1|LRRC32|ENSG00000137507.7|leucine rich repeat containing 32
hg19_v2_chr13_-_31038370_31038509	0.0137718	GUAGUGU	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr12_+_65004292_65004306	0.0130952	GUAGUGU	ENST00000542104.1|RASSF3|ENSG00000153179.7|Ras association (RalGDS/AF-6) domain family member 3 	ENST00000336061.2|RASSF3|ENSG00000153179.7|Ras association (RalGDS/AF-6) domain family member 3
hg19_v2_chr11_+_120207787_120207962	0.0124563	GUAGUGU	ENST00000397843.2|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12 	ENST00000356641.3|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr1_+_7831323_7831414	0.0121264	GUAGUGU	ENST00000054666.6|VAMP3|ENSG00000049245.8|vesicle-associated membrane protein 3
hg19_v2_chr1_+_87170247_87170276	0.0120302	GUAGUGU	ENST00000370558.4|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr8_-_38239732_38239796	0.0118628	GUAGUGU	ENST00000534155.1|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000433384.2|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000317025.8|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000316985.3|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1
hg19_v2_chr2_-_68479614_68479685	0.0115109	GUAGUGU	ENST00000234310.3|PPP3R1|ENSG00000221823.6|protein phosphatase 3, regulatory subunit B, alpha
hg19_v2_chr20_-_45984401_45984514	0.0113795	GUAGUGU	ENST00000311275.7|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr7_-_105752651_105752777	0.0113135	GUAGUGU	ENST00000470347.1|SYPL1|ENSG00000008282.3|synaptophysin-like 1 	ENST00000455385.2|SYPL1|ENSG00000008282.3|synaptophysin-like 1
hg19_v2_chr18_-_33647487_33647547	0.0109088	GUAGUGU	ENST00000590898.1|RPRD1A|ENSG00000141425.13|regulation of nuclear pre-mRNA domain containing 1A 	ENST00000357384.4|RPRD1A|ENSG00000141425.13|regulation of nuclear pre-mRNA domain containing 1A 	ENST00000319040.6|RPRD1A|ENSG00000141425.13|regulation of nuclear pre-mRNA domain containing 1A 	ENST00000588737.1|RPRD1A|ENSG00000141425.13|regulation of nuclear pre-mRNA domain containing 1A 	ENST00000399022.4|RPRD1A|ENSG00000141425.13|regulation of nuclear pre-mRNA domain containing 1A
hg19_v2_chr3_+_128968437_128968505	0.0104939	GUAGUGU	ENST00000314797.6|COPG1|ENSG00000181789.10|coatomer protein complex, subunit gamma 1
hg19_v2_chr15_+_71389281_71389306	0.0104389	GUAGUGU	ENST00000355327.3|THSD4|ENSG00000187720.10|thrombospondin, type I, domain containing 4
hg19_v2_chr5_-_53606396_53606431	0.0103734	GUAGUGU	ENST00000504924.1|ARL15|ENSG00000185305.6|ADP-ribosylation factor-like 15 	ENST00000507646.2|ARL15|ENSG00000185305.6|ADP-ribosylation factor-like 15 	ENST00000502271.1|ARL15|ENSG00000185305.6|ADP-ribosylation factor-like 15
hg19_v2_chr20_-_61569227_61569287	0.0101754	GUAGUGU	ENST00000266070.4|DIDO1|ENSG00000101191.12|death inducer-obliterator 1 	ENST00000395335.2|DIDO1|ENSG00000101191.12|death inducer-obliterator 1 	ENST00000266071.5|DIDO1|ENSG00000101191.12|death inducer-obliterator 1
hg19_v2_chr17_+_44668035_44668100	0.0100875	GUAGUGU	ENST00000398238.4|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor 	ENST00000225282.8|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr5_+_53813536_53813613	0.00955079	GUAGUGU	ENST00000343017.6|SNX18|ENSG00000178996.8|sorting nexin 18 	ENST00000381410.4|SNX18|ENSG00000178996.8|sorting nexin 18 	ENST00000326277.3|SNX18|ENSG00000178996.8|sorting nexin 18
hg19_v2_chr15_+_79165151_79165218	0.00947893	GUAGUGU	ENST00000331268.5|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr5_+_134181625_134181713	0.00940364	GUAGUGU	ENST00000394976.3|C5orf24|ENSG00000181904.8|chromosome 5 open reading frame 24
hg19_v2_chr11_+_126152954_126152999	0.00918646	GUAGUGU	ENST00000392679.1|TIRAP|ENSG00000150455.9|toll-interleukin 1 receptor (TIR) domain containing adaptor protein
hg19_v2_chrX_+_44732757_44732860	0.00913694	GUAGUGU	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr6_+_163835669_163835693	0.00856671	GUAGUGU	ENST00000453779.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000275262.7|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000392127.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000361752.3|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding
hg19_v2_chr17_+_67410832_67410871	0.00807093	GUAGUGU	ENST00000590474.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr7_-_6523755_6523873	0.00780919	GUAGUGU	ENST00000436575.1|DAGLB|ENSG00000164535.10|diacylglycerol lipase, beta 	ENST00000258739.4|KDELR2|ENSG00000136240.5|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
hg19_v2_chr7_+_21467642_21467671	0.0075956	GUAGUGU	ENST00000222584.3|SP4|ENSG00000105866.9|Sp4 transcription factor 	ENST00000432066.2|SP4|ENSG00000105866.9|Sp4 transcription factor
hg19_v2_chr14_-_35182994_35183034	0.00754439	GUAGUGU	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr10_+_97803151_97803348	0.00723865	GUAGUGU	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr2_+_179345173_179345221	0.00722337	GUAGUGU	ENST00000234453.5|PLEKHA3|ENSG00000116095.6|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3
hg19_v2_chr2_-_153032484_153032537	0.00701608	GUAGUGU	ENST00000263904.4|STAM2|ENSG00000115145.5|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
hg19_v2_chr2_-_39664405_39664453	0.00689221	GUAGUGU	ENST00000341681.5|MAP4K3|ENSG00000011566.10|mitogen-activated protein kinase kinase kinase kinase 3 	ENST00000263881.3|MAP4K3|ENSG00000011566.10|mitogen-activated protein kinase kinase kinase kinase 3
hg19_v2_chr1_-_31538517_31538632	0.00670233	GUAGUGU	ENST00000440538.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000423018.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000424085.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000426105.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000257075.5|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373747.3|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000525843.1|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373742.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1
hg19_v2_chr1_+_224544552_224544570	0.00667789	GUAGUGU	ENST00000465271.1|CNIH4|ENSG00000143771.7|cornichon family AMPA receptor auxiliary protein 4 	ENST00000366858.3|CNIH4|ENSG00000143771.7|cornichon family AMPA receptor auxiliary protein 4
hg19_v2_chr6_-_132834184_132834337	0.00667199	GUAGUGU	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr7_-_123389104_123389161	0.00660366	GUAGUGU	ENST00000223023.4|WASL|ENSG00000106299.7|Wiskott-Aldrich syndrome-like
hg19_v2_chr2_+_204192942_204193038	0.0065977	GUAGUGU	ENST00000295851.5|ABI2|ENSG00000138443.11|abl-interactor 2 	ENST00000261017.5|ABI2|ENSG00000138443.11|abl-interactor 2
hg19_v2_chr1_-_155532484_155532605	0.00619036	GUAGUGU	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chr5_-_142783175_142783297	0.00607328	GUAGUGU	ENST00000231509.3|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 	ENST00000394464.2|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
hg19_v2_chr5_-_173043591_173043688	0.00604602	GUAGUGU	ENST00000285908.5|BOD1|ENSG00000145919.6|biorientation of chromosomes in cell division 1 	ENST00000480951.1|BOD1|ENSG00000145919.6|biorientation of chromosomes in cell division 1 	ENST00000311086.4|BOD1|ENSG00000145919.6|biorientation of chromosomes in cell division 1
hg19_v2_chr4_+_87856129_87856186	0.00601484	GUAGUGU	ENST00000395146.4|AFF1|ENSG00000172493.16|AF4/FMR2 family, member 1 	ENST00000507468.1|AFF1|ENSG00000172493.16|AF4/FMR2 family, member 1
hg19_v2_chr5_-_114961858_114961876	0.00579773	GUAGUGU	ENST00000282382.4|TMED7-TICAM2|ENSG00000251201.4|TMED7-TICAM2 readthrough 	ENST00000456936.3|TMED7|ENSG00000134970.13|transmembrane emp24 protein transport domain containing 7 	ENST00000408996.4|TICAM2|ENSG00000243414.4|toll-like receptor adaptor molecule 2
hg19_v2_chr10_+_101292684_101292706	0.00558725	GUAGUGU	ENST00000344586.7|NKX2-3|ENSG00000119919.9|NK2 homeobox 3
hg19_v2_chr1_-_226924980_226925159	0.00532354	GUAGUGU	ENST00000272117.3|ITPKB|ENSG00000143772.5|inositol-trisphosphate 3-kinase B
hg19_v2_chr4_+_699537_699600	0.00532187	GUAGUGU	ENST00000419774.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000362003.5|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000400151.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000427463.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000470161.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr8_+_9413410_9413451	0.00523638	GUAGUGU	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr18_+_43753974_43754019	0.00507282	GUAGUGU	ENST00000282059.6|C18orf25|ENSG00000152242.6|chromosome 18 open reading frame 25 	ENST00000321319.6|C18orf25|ENSG00000152242.6|chromosome 18 open reading frame 25
hg19_v2_chr7_-_44924939_44924993	0.00494384	GUAGUGU	ENST00000395699.2|PURB|ENSG00000146676.5|purine-rich element binding protein B
hg19_v2_chr1_+_114472222_114472377	0.00467928	GUAGUGU	ENST00000369558.1|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369561.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr6_-_30585009_30585028	0.00460316	GUAGUGU	ENST00000376511.2|PPP1R10|ENSG00000204569.5|protein phosphatase 1, regulatory subunit 10
hg19_v2_chr2_+_210444142_210444194	0.00448298	GUAGUGU	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr14_-_93799360_93799438	0.00403462	GUAGUGU	ENST00000334746.5|BTBD7|ENSG00000011114.10|BTB (POZ) domain containing 7 	ENST00000554565.1|BTBD7|ENSG00000011114.10|BTB (POZ) domain containing 7 	ENST00000298896.3|BTBD7|ENSG00000011114.10|BTB (POZ) domain containing 7
hg19_v2_chr12_+_8850471_8850534	0.00399661	GUAGUGU	ENST00000535829.1|RIMKLB|ENSG00000166532.11|ribosomal modification protein rimK-like family member B 	ENST00000357529.3|RIMKLB|ENSG00000166532.11|ribosomal modification protein rimK-like family member B
hg19_v2_chr1_+_66797687_66797884	0.00398891	GUAGUGU	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr9_+_116638562_116638606	0.00386831	GUAGUGU	ENST00000374126.5|ZNF618|ENSG00000157657.10|zinc finger protein 618 	ENST00000288466.7|ZNF618|ENSG00000157657.10|zinc finger protein 618
hg19_v2_chr6_-_30712313_30712332	0.00368809	GUAGUGU	ENST00000376377.2|IER3|ENSG00000137331.11|immediate early response 3 	ENST00000259874.5|IER3|ENSG00000137331.11|immediate early response 3
hg19_v2_chr17_-_62340581_62340671	0.00365932	GUAGUGU	ENST00000258991.3|TEX2|ENSG00000136478.3|testis expressed 2 	ENST00000583738.1|TEX2|ENSG00000136478.3|testis expressed 2 	ENST00000584379.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr16_-_74700737_74700804	0.00343831	GUAGUGU	ENST00000576652.1|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3 	ENST00000572337.1|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3 	ENST00000571750.1|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3 	ENST00000572990.1|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3 	ENST00000361070.4|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3
hg19_v2_chr6_-_138893661_138893687	0.00340306	GUAGUGU	ENST00000427025.2|NHSL1|ENSG00000135540.7|NHS-like 1
hg19_v2_chr11_+_122709200_122709215	0.00328542	GUAGUGU	ENST00000227348.4|CRTAM|ENSG00000109943.4|cytotoxic and regulatory T cell molecule
hg19_v2_chr13_+_28813645_28813770	0.00311879	GUAGUGU	ENST00000282391.5|PAN3|ENSG00000152520.9|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
hg19_v2_chr17_+_2699697_2699776	0.0030976	GUAGUGU	ENST00000254695.8|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000366401.4|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000542807.1|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2
hg19_v2_chr2_-_161350305_161350391	0.0030804	GUAGUGU	ENST00000348849.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr14_+_65381079_65381212	0.0030719	GUAGUGU	ENST00000549115.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000607599.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000548752.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000359118.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000552002.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000551947.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000551093.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000542227.1|FNTB|ENSG00000257365.3|farnesyltransferase, CAAX box, beta 	ENST00000447296.2|FNTB|ENSG00000257365.3|farnesyltransferase, CAAX box, beta 	ENST00000549987.1|CHURC1-FNTB|ENSG00000125954.8|CHURC1-FNTB readthrough
hg19_v2_chr12_-_117628333_117628339	0.00301015	GUAGUGU	ENST00000427718.2|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr3_+_93781728_93781760	0.00297014	GUAGUGU	ENST00000314622.4|NSUN3|ENSG00000178694.5|NOP2/Sun domain family, member 3
hg19_v2_chr5_+_95066823_95066879	0.00263937	GUAGUGU	ENST00000506817.1|RHOBTB3|ENSG00000164292.8|Rho-related BTB domain containing 3 	ENST00000379982.3|RHOBTB3|ENSG00000164292.8|Rho-related BTB domain containing 3
hg19_v2_chr17_-_48474828_48474914	0.00239976	GUAGUGU	ENST00000576448.1|LRRC59|ENSG00000108829.9|leucine rich repeat containing 59 	ENST00000225972.7|LRRC59|ENSG00000108829.9|leucine rich repeat containing 59
hg19_v2_chr11_+_118307179_118307228	0.00232797	GUAGUGU	ENST00000534358.1|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000531904.2|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000389506.5|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000354520.4|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A
hg19_v2_chr14_-_21737610_21737653	0.00218887	GUAGUGU	ENST00000320084.7|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000449098.1|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000336053.6|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2)
hg19_v2_chr20_+_8112824_8112925	0.00207568	GUAGUGU	ENST00000378641.3|PLCB1|ENSG00000182621.12|phospholipase C, beta 1 (phosphoinositide-specific)
hg19_v2_chr3_+_100428268_100428287	0.00186851	GUAGUGU	ENST00000240851.4|TFG|ENSG00000114354.8|TRK-fused gene
hg19_v2_chrX_+_147582130_147582147	0.00173524	GUAGUGU	ENST00000370460.2|AFF2|ENSG00000155966.9|AF4/FMR2 family, member 2 	ENST00000370457.5|AFF2|ENSG00000155966.9|AF4/FMR2 family, member 2
hg19_v2_chr9_-_115095883_115095947	0.00172423	GUAGUGU	ENST00000450374.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374255.2|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000334318.6|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374257.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3
hg19_v2_chr7_+_20370746_20370778	0.00165464	GUAGUGU	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr6_-_74363803_74363878	0.00155157	GUAGUGU	ENST00000355773.5|SLC17A5|ENSG00000119899.11|solute carrier family 17 (acidic sugar transporter), member 5
hg19_v2_chr11_+_57520715_57520776	0.00114023	GUAGUGU	ENST00000524630.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000529919.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000399039.4|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000533189.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1
hg19_v2_chr6_+_7107999_7108054	0.00103525	GUAGUGU	ENST00000491191.1|RREB1|ENSG00000124782.15|ras responsive element binding protein 1 	ENST00000379938.2|RREB1|ENSG00000124782.15|ras responsive element binding protein 1 	ENST00000471433.1|RREB1|ENSG00000124782.15|ras responsive element binding protein 1
hg19_v2_chr1_+_213031570_213031597	0.000972657	GUAGUGU	ENST00000366971.4|FLVCR1|ENSG00000162769.8|feline leukemia virus subgroup C cellular receptor 1
hg19_v2_chr9_-_127703333_127703398	0.000704842	GUAGUGU	ENST00000373555.4|GOLGA1|ENSG00000136935.9|golgin A1
hg19_v2_chr5_-_133512683_133512729	0.000625762	GUAGUGU	ENST00000353411.6|SKP1|ENSG00000113558.14|S-phase kinase-associated protein 1
hg19_v2_chr4_-_16077741_16077760	0.000612454	GUAGUGU	ENST00000447510.2|PROM1|ENSG00000007062.7|prominin 1 	ENST00000540805.1|PROM1|ENSG00000007062.7|prominin 1 	ENST00000539194.1|PROM1|ENSG00000007062.7|prominin 1
hg19_v2_chr20_-_3996036_3996153	0.000490665	GUAGUGU	ENST00000336095.6|RNF24|ENSG00000101236.12|ring finger protein 24
hg19_v2_chr1_-_179198702_179198741	1.8299e-05	GUAGUGU	ENST00000502732.1|ABL2|ENSG00000143322.15|c-abl oncogene 2, non-receptor tyrosine kinase
