hg19_v2_chr19_+_50148087_50148275	1.59007	GLI3	ENST00000601038.1|SCAF1|ENSG00000126461.10|SR-related CTD-associated factor 1 	ENST00000595242.1|SCAF1|ENSG00000126461.10|SR-related CTD-associated factor 1
hg19_v2_chr19_-_46145696_46145820	1.2151	GLI3	ENST00000588172.1|EML2|ENSG00000125746.10|echinoderm microtubule associated protein like 2
hg19_v2_chr19_+_51152702_51152702	1.2019	GLI3	ENST00000425202.1|C19orf81|ENSG00000235034.2|chromosome 19 open reading frame 81
hg19_v2_chr16_+_29832634_29832661	0.969321	GLI3	ENST00000565164.1|MVP|ENSG00000013364.14|major vault protein 	ENST00000570234.1|MVP|ENSG00000013364.14|major vault protein
hg19_v2_chr19_-_30199516_30199555	0.967498	GLI3	ENST00000591243.1|C19orf12|ENSG00000131943.13|chromosome 19 open reading frame 12
hg19_v2_chr19_-_50381606_50381716	0.926139	GLI3	ENST00000391830.1|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich)
hg19_v2_chr7_+_76101379_76101379	0.924186	GLI3	ENST00000429179.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila)
hg19_v2_chr11_+_76493294_76493332	0.920606	GLI3	ENST00000533752.1|TSKU|ENSG00000182704.6|tsukushi, small leucine rich proteoglycan
hg19_v2_chr16_+_70695570_70695570	0.856957	GLI3	ENST00000597002.1|FLJ00418|ENSG00000268927.1|FLJ00418
hg19_v2_chr20_+_62327996_62328021	0.848747	GLI3	ENST00000369996.1|TNFRSF6B|ENSG00000243509.4|tumor necrosis factor receptor superfamily, member 6b, decoy
hg19_v2_chr19_+_782755_782833	0.832706	GLI3	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr19_+_676385_676403	0.828742	GLI3	ENST00000166139.4|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr7_-_994302_994333	0.816139	GLI3	ENST00000265846.5|ADAP1|ENSG00000105963.9|ArfGAP with dual PH domains 1
hg19_v2_chr19_+_18283959_18283993	0.811917	GLI3	ENST00000597802.2|IFI30|ENSG00000216490.3|interferon, gamma-inducible protein 30
hg19_v2_chr14_+_105559784_105559946	0.810434	GLI3	ENST00000548104.1|RP11-44N21.1|ENSG00000257556.1|RP11-44N21.1
hg19_v2_chr11_+_64053311_64053387	0.774048	GLI3	ENST00000540370.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr11_+_64073699_64073918	0.771271	GLI3	ENST00000405666.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha 	ENST00000468670.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha
hg19_v2_chr16_+_30675654_30675778	0.738872	GLI3	ENST00000287468.5|FBRS|ENSG00000156860.11|fibrosin 	ENST00000395073.2|FBRS|ENSG00000156860.11|fibrosin
hg19_v2_chr12_-_57030096_57030106	0.736328	GLI3	ENST00000549506.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr6_-_33756867_33756950	0.735493	GLI3	ENST00000293760.5|LEMD2|ENSG00000161904.7|LEM domain containing 2
hg19_v2_chr14_+_94577074_94577161	0.735444	GLI3	ENST00000444961.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000448882.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557098.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000554800.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000556544.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000298902.5|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555819.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557634.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555744.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27
hg19_v2_chr17_-_7307358_7307456	0.724343	GLI3	ENST00000576017.1|TMEM256|ENSG00000205544.3|transmembrane protein 256 	ENST00000535512.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000302422.3|TMEM256|ENSG00000205544.3|transmembrane protein 256
hg19_v2_chr11_+_393428_393463	0.716814	GLI3	ENST00000533249.1|PKP3|ENSG00000184363.5|plakophilin 3 	ENST00000527442.1|PKP3|ENSG00000184363.5|plakophilin 3
hg19_v2_chr8_+_94752349_94752349	0.716652	GLI3	ENST00000391680.1|RBM12B-AS1|ENSG00000212998.1|RBM12B antisense RNA 1
hg19_v2_chr19_-_10464570_10464754	0.713415	GLI3	ENST00000529739.1|TYK2|ENSG00000105397.9|tyrosine kinase 2
hg19_v2_chr5_+_149340339_149340358	0.672162	GLI3	ENST00000433184.1|SLC26A2|ENSG00000155850.7|solute carrier family 26 (anion exchanger), member 2
hg19_v2_chr8_-_144691718_144691784	0.661529	GLI3	ENST00000377579.3|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000433751.1|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000220966.6|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like
hg19_v2_chr1_-_1310530_1310603	0.654667	GLI3	ENST00000338370.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000321751.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000378853.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr3_+_50388126_50388328	0.646371	GLI3	ENST00000425346.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000424512.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000232508.5|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000418577.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000606589.1|XXcos-LUCA11.5|ENSG00000272104.1|Uncharacterized protein
hg19_v2_chr11_-_111649074_111649123	0.636601	GLI3	ENST00000534218.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr1_-_1310870_1310920	0.635561	GLI3	ENST00000338338.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr11_-_796197_796361	0.628293	GLI3	ENST00000530360.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000528606.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000320230.5|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22
hg19_v2_chr19_+_39989535_39989562	0.626771	GLI3	ENST00000356433.5|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr10_+_71389983_71390040	0.609148	GLI3	ENST00000373279.4|C10orf35|ENSG00000171224.7|chromosome 10 open reading frame 35
hg19_v2_chrX_-_48693955_48694035	0.608503	GLI3	ENST00000218230.5|PCSK1N|ENSG00000102109.7|proprotein convertase subtilisin/kexin type 1 inhibitor
hg19_v2_chr19_-_55895966_55895966	0.599817	GLI3	ENST00000444469.3|TMEM238|ENSG00000233493.3|transmembrane protein 238
hg19_v2_chr11_-_118789613_118789738	0.593877	GLI3	ENST00000532899.1|BCL9L|ENSG00000186174.8|B-cell CLL/lymphoma 9-like
hg19_v2_chr6_-_27841289_27841318	0.591914	GLI3	ENST00000355981.2|HIST1H4L|ENSG00000198558.2|histone cluster 1, H4l
hg19_v2_chr7_+_99954224_99954373	0.588297	GLI3	ENST00000608825.1|PILRB|ENSG00000121716.14|paired immunoglobin-like type 2 receptor beta
hg19_v2_chr17_+_73089382_73089451	0.583872	GLI3	ENST00000538213.2|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000584118.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chr8_+_22428457_22428633	0.569905	GLI3	ENST00000517962.1|SORBS3|ENSG00000120896.9|sorbin and SH3 domain containing 3
hg19_v2_chr16_-_850723_850741	0.567898	GLI3	ENST00000248150.4|GNG13|ENSG00000127588.4|guanine nucleotide binding protein (G protein), gamma 13
hg19_v2_chr17_+_43238438_43238461	0.56155	GLI3	ENST00000593138.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000586681.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr16_-_11681023_11681145	0.558134	GLI3	ENST00000570904.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor 	ENST00000574701.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr19_-_6379069_6379069	0.550833	GLI3	ENST00000597721.1|PSPN|ENSG00000125650.4|persephin
hg19_v2_chr11_+_1295809_1295809	0.550111	GLI3	ENST00000598274.1|AC136297.1|ENSG00000267950.1|Uncharacterized protein
hg19_v2_chr19_-_2041159_2041206	0.542455	GLI3	ENST00000589441.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr16_+_77233294_77233341	0.537807	GLI3	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr19_-_13947099_13947104	0.535265	GLI3	ENST00000587762.1|MIR24-2|ENSG00000267519.2|microRNA 24-2
hg19_v2_chr7_-_2595337_2595361	0.534517	GLI3	ENST00000340611.4|BRAT1|ENSG00000106009.11|BRCA1-associated ATM activator 1
hg19_v2_chrX_+_153626571_153626627	0.534155	GLI3	ENST00000424325.2|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr12_-_54582655_54582780	0.532459	GLI3	ENST00000504338.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514685.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000504797.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000513838.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000505128.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000337581.3|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000503306.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000243112.5|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514196.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000506169.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000507904.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000508394.2|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1
hg19_v2_chr5_-_180237082_180237148	0.53094	GLI3	ENST00000506889.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr19_+_48281842_48281853	0.529926	GLI3	ENST00000509570.2|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr16_+_2820912_2821032	0.518828	GLI3	ENST00000570539.1|SRRM2|ENSG00000167978.12|serine/arginine repetitive matrix 2
hg19_v2_chr14_+_105155925_105155979	0.516172	GLI3	ENST00000330634.7|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000398337.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000392634.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing
hg19_v2_chr20_+_3190006_3190178	0.515256	GLI3	ENST00000380113.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000455664.2|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000399838.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
hg19_v2_chr5_-_137090028_137090075	0.514472	GLI3	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr14_+_24099318_24099333	0.511296	GLI3	ENST00000432832.2|DHRS2|ENSG00000100867.10|dehydrogenase/reductase (SDR family) member 2
hg19_v2_chr19_+_45417812_45417869	0.507943	GLI3	ENST00000592535.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr16_+_765092_765169	0.505171	GLI3	ENST00000568223.2|METRN|ENSG00000103260.4|meteorin, glial cell differentiation regulator
hg19_v2_chr1_-_21978312_21978363	0.501968	GLI3	ENST00000359708.4|RAP1GAP|ENSG00000076864.15|RAP1 GTPase activating protein 	ENST00000290101.4|RAP1GAP|ENSG00000076864.15|RAP1 GTPase activating protein
hg19_v2_chr5_+_23951673_23951673	0.501065	GLI3	ENST00000507936.1|C5orf17|ENSG00000248874.1|chromosome 5 open reading frame 17
hg19_v2_chr19_-_33793430_33793470	0.500618	GLI3	ENST00000498907.2|CEBPA|ENSG00000245848.2|CCAAT/enhancer binding protein (C/EBP), alpha
hg19_v2_chr14_+_105147464_105147523	0.499999	GLI3	ENST00000540171.2|RP11-982M15.6|ENSG00000256050.2|RP11-982M15.6
hg19_v2_chr7_+_2685164_2685197	0.496654	GLI3	ENST00000400376.2|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr16_-_4817129_4817219	0.494015	GLI3	ENST00000545009.1|ZNF500|ENSG00000103199.9|zinc finger protein 500 	ENST00000219478.6|ZNF500|ENSG00000103199.9|zinc finger protein 500
hg19_v2_chr22_-_50970919_50971009	0.489288	GLI3	ENST00000329363.4|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000437588.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr16_+_28875268_28875317	0.483004	GLI3	ENST00000395532.4|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr19_+_49713991_49714040	0.481319	GLI3	ENST00000597316.1|TRPM4|ENSG00000130529.11|transient receptor potential cation channel, subfamily M, member 4
hg19_v2_chr16_+_70488480_70488630	0.48089	GLI3	ENST00000572784.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000574784.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000571514.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000378912.2|FUK|ENSG00000157353.12|fucokinase 	ENST00000428974.2|FUK|ENSG00000157353.12|fucokinase 	ENST00000573352.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000576453.1|FUK|ENSG00000157353.12|fucokinase
hg19_v2_chr17_+_80193644_80193654	0.478685	GLI3	ENST00000582946.1|SLC16A3|ENSG00000141526.10|solute carrier family 16 (monocarboxylate transporter), member 3
hg19_v2_chr16_+_84209738_84209748	0.474329	GLI3	ENST00000564928.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr5_-_180237445_180237462	0.469567	GLI3	ENST00000393340.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr19_+_44037334_44037365	0.465705	GLI3	ENST00000314228.5|ZNF575|ENSG00000176472.6|zinc finger protein 575
hg19_v2_chr12_+_6977323_6977361	0.464531	GLI3	ENST00000462761.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1
hg19_v2_chr20_-_62258394_62258464	0.461631	GLI3	ENST00000370077.1|GMEB2|ENSG00000101216.6|glucocorticoid modulatory element binding protein 2
hg19_v2_chr12_-_111806892_111806925	0.461057	GLI3	ENST00000547710.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000549321.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000361483.3|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000392658.5|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A
hg19_v2_chr19_+_1905365_1905417	0.457405	GLI3	ENST00000329478.2|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3 	ENST00000409472.1|SCAMP4|ENSG00000227500.5|secretory carrier membrane protein 4 	ENST00000602400.1|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3
hg19_v2_chr11_-_568369_568457	0.456704	GLI3	ENST00000534540.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000528245.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000500447.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000533920.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding)
hg19_v2_chr19_-_4454081_4454090	0.454918	GLI3	ENST00000591919.1|UBXN6|ENSG00000167671.7|UBX domain protein 6
hg19_v2_chr19_+_39989580_39989608	0.454145	GLI3	ENST00000596614.1|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila) 	ENST00000205143.4|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr7_-_100034060_100034188	0.453192	GLI3	ENST00000292330.2|PPP1R35|ENSG00000160813.2|protein phosphatase 1, regulatory subunit 35
hg19_v2_chr19_+_17337027_17337062	0.450071	GLI3	ENST00000601529.1|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1 	ENST00000600232.1|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1
hg19_v2_chr8_-_144890847_144890847	0.450037	GLI3	ENST00000531942.1|SCRIB|ENSG00000180900.12|scribbled planar cell polarity protein
hg19_v2_chr19_+_18699535_18699591	0.449716	GLI3	ENST00000358607.6|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chr9_+_139247484_139247509	0.448765	GLI3	ENST00000429455.1|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1
hg19_v2_chr16_-_88717482_88717560	0.443855	GLI3	ENST00000261623.3|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr19_-_39832563_39832623	0.443586	GLI3	ENST00000599274.1|CTC-246B18.10|ENSG00000269246.1|CTC-246B18.10
hg19_v2_chr22_-_21213676_21213705	0.441161	GLI3	ENST00000449120.1|PI4KA|ENSG00000241973.6|phosphatidylinositol 4-kinase, catalytic, alpha
hg19_v2_chr2_-_74726710_74726843	0.440806	GLI3	ENST00000377566.4|LBX2|ENSG00000179528.11|ladybird homeobox 2
hg19_v2_chr6_-_85473073_85473114	0.439957	GLI3	ENST00000606621.1|TBX18|ENSG00000112837.12|T-box 18
hg19_v2_chr19_+_3708338_3708374	0.438304	GLI3	ENST00000590545.1|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr17_+_46184911_46184951	0.436932	GLI3	ENST00000580219.1|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000452859.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000393405.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000439357.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000359238.2|SNX11|ENSG00000002919.10|sorting nexin 11
hg19_v2_chr7_+_33168856_33168913	0.435685	GLI3	ENST00000432983.1|BBS9|ENSG00000122507.16|Bardet-Biedl syndrome 9
hg19_v2_chr11_-_1785139_1785222	0.435636	GLI3	ENST00000236671.2|CTSD|ENSG00000117984.8|cathepsin D
hg19_v2_chr16_+_58033450_58033483	0.435463	GLI3	ENST00000561743.1|USB1|ENSG00000103005.7|U6 snRNA biogenesis 1
hg19_v2_chr1_+_180165672_180165817	0.434729	GLI3	ENST00000443059.1|QSOX1|ENSG00000116260.12|quiescin Q6 sulfhydryl oxidase 1
hg19_v2_chr5_+_140044261_140044464	0.434292	GLI3	ENST00000358337.5|WDR55|ENSG00000120314.14|WD repeat domain 55
hg19_v2_chr17_+_73642315_73642344	0.433126	GLI3	ENST00000556126.2|SMIM6|ENSG00000259120.2|small integral membrane protein 6
hg19_v2_chr16_+_68279207_68279252	0.432483	GLI3	ENST00000413021.2|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000565744.1|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000219345.5|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV
hg19_v2_chr19_+_45165545_45165545	0.43234	GLI3	ENST00000592472.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000587729.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000585657.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000592789.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000591979.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19
hg19_v2_chr6_-_26027480_26027522	0.431057	GLI3	ENST00000377364.3|HIST1H4B|ENSG00000124529.3|histone cluster 1, H4b
hg19_v2_chr6_-_33548006_33548069	0.430425	GLI3	ENST00000374467.3|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr19_+_58962971_58963014	0.429656	GLI3	ENST00000336614.4|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000545523.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599194.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000598244.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599193.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000594214.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000391696.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B
hg19_v2_chr15_+_89164560_89164601	0.428753	GLI3	ENST00000379231.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease 	ENST00000559528.1|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chr8_+_143761874_143761921	0.427403	GLI3	ENST00000301258.4|PSCA|ENSG00000167653.4|prostate stem cell antigen 	ENST00000513264.1|PSCA|ENSG00000167653.4|prostate stem cell antigen
hg19_v2_chr17_-_7137857_7137869	0.424256	GLI3	ENST00000005340.5|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr2_+_201981663_201981762	0.422694	GLI3	ENST00000433445.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr6_-_31671058_31671221	0.421756	GLI3	ENST00000538874.1|ABHD16A|ENSG00000204427.7|abhydrolase domain containing 16A 	ENST00000395952.3|ABHD16A|ENSG00000204427.7|abhydrolase domain containing 16A
hg19_v2_chr20_+_43343476_43343487	0.418534	GLI3	ENST00000372868.2|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr8_+_22857048_22857092	0.417486	GLI3	ENST00000251822.6|RHOBTB2|ENSG00000008853.12|Rho-related BTB domain containing 2
hg19_v2_chr1_+_44440575_44440646	0.417384	GLI3	ENST00000532642.1|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000236067.4|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000471859.2|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
hg19_v2_chr17_+_76422409_76422409	0.417014	GLI3	ENST00000600087.1|AC061992.1|ENSG00000268965.1|Uncharacterized protein
hg19_v2_chr16_+_88493879_88493879	0.416356	GLI3	ENST00000565624.1|ZNF469|ENSG00000225614.2|zinc finger protein 469 	ENST00000437464.1|ZNF469|ENSG00000225614.2|zinc finger protein 469
hg19_v2_chr3_-_135915146_135915194	0.415725	GLI3	ENST00000473093.1|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chr19_-_47922750_47922795	0.415601	GLI3	ENST00000331559.5|MEIS3|ENSG00000105419.13|Meis homeobox 3
hg19_v2_chr17_+_43239191_43239212	0.411043	GLI3	ENST00000589230.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr1_+_24117627_24117659	0.405203	GLI3	ENST00000400061.1|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr17_-_19062424_19062424	0.401488	GLI3	ENST00000399083.1|AC007952.6|ENSG00000197665.5|Uncharacterized protein
hg19_v2_chr8_-_94752946_94753008	0.40114	GLI3	ENST00000519109.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B
hg19_v2_chr19_-_54693146_54693249	0.398621	GLI3	ENST00000414665.1|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7 	ENST00000453320.1|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chr19_+_4969116_4969143	0.397452	GLI3	ENST00000588337.1|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000159111.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000381759.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B
hg19_v2_chr2_-_201936302_201936416	0.396896	GLI3	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr16_+_68279256_68279309	0.390353	GLI3	ENST00000564827.2|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000566188.1|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000444212.2|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000568082.1|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV
hg19_v2_chr12_+_51632638_51632665	0.389353	GLI3	ENST00000549732.2|DAZAP2|ENSG00000183283.11|DAZ associated protein 2
hg19_v2_chr14_+_71165292_71165415	0.385814	GLI3	ENST00000553682.1|RP6-65G23.1|ENSG00000258689.1|RP6-65G23.1
hg19_v2_chr2_-_11272234_11272390	0.385686	GLI3	ENST00000590207.1|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000417697.2|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000396164.1|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000536743.1|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000544306.1|AC062028.1|ENSG00000145063.10|AC062028.1
hg19_v2_chr10_-_103454876_103455016	0.385294	GLI3	ENST00000331272.7|FBXW4|ENSG00000107829.9|F-box and WD repeat domain containing 4
hg19_v2_chr19_+_5914213_5914286	0.383816	GLI3	ENST00000222125.5|CAPS|ENSG00000105519.8|calcyphosine 	ENST00000452990.2|CAPS|ENSG00000105519.8|calcyphosine 	ENST00000588865.1|CAPS|ENSG00000105519.8|calcyphosine
hg19_v2_chr16_+_89979826_89979826	0.38306	GLI3	ENST00000555427.1|MC1R|ENSG00000258839.2|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
hg19_v2_chr19_+_37960466_37960478	0.382673	GLI3	ENST00000589725.1|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr3_-_125802765_125802990	0.382356	GLI3	ENST00000514891.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000512470.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000504035.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000360370.4|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000513723.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000510651.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000514333.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr11_-_65374430_65374497	0.376082	GLI3	ENST00000532507.1|MAP3K11|ENSG00000173327.3|mitogen-activated protein kinase kinase kinase 11
hg19_v2_chr16_-_2260834_2260906	0.37591	GLI3	ENST00000562360.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5 	ENST00000566018.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5
hg19_v2_chr17_+_21729899_21729906	0.375716	GLI3	ENST00000583708.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4
hg19_v2_chr3_-_10052849_10052867	0.37506	GLI3	ENST00000437616.1|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000429065.2|AC022007.5|ENSG00000206567.5|AC022007.5
hg19_v2_chr17_+_73642486_73642517	0.374547	GLI3	ENST00000579469.1|SMIM6|ENSG00000259120.2|small integral membrane protein 6
hg19_v2_chr11_+_844067_844158	0.369972	GLI3	ENST00000397406.1|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000409543.2|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000525201.1|TSPAN4|ENSG00000214063.6|tetraspanin 4
hg19_v2_chr20_-_1165117_1165117	0.369742	GLI3	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr20_+_814377_814452	0.367706	GLI3	ENST00000304189.2|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A 	ENST00000381939.1|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A
hg19_v2_chr22_+_24990746_24990781	0.366764	GLI3	ENST00000456869.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000411974.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr19_+_17337007_17337018	0.366724	GLI3	ENST00000215061.4|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1
hg19_v2_chr5_-_180236811_180236880	0.366644	GLI3	ENST00000446023.2|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr11_+_123301012_123301058	0.3659	GLI3	ENST00000533341.1|AP000783.1|ENSG00000254667.1|Uncharacterized protein
hg19_v2_chr22_+_20905422_20905577	0.365308	GLI3	ENST00000424287.1|MED15|ENSG00000099917.13|mediator complex subunit 15 	ENST00000423862.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr8_-_145980808_145980922	0.365194	GLI3	ENST00000525191.1|ZNF251|ENSG00000198169.4|zinc finger protein 251
hg19_v2_chr17_+_17380294_17380351	0.357026	GLI3	ENST00000268711.3|MED9|ENSG00000141026.4|mediator complex subunit 9 	ENST00000580462.1|MED9|ENSG00000141026.4|mediator complex subunit 9
hg19_v2_chr14_-_21566731_21566836	0.356344	GLI3	ENST00000360947.3|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr8_-_131028782_131028818	0.353937	GLI3	ENST00000519020.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B
hg19_v2_chr5_+_150157444_150157508	0.353754	GLI3	ENST00000526627.1|SMIM3|ENSG00000256235.1|small integral membrane protein 3
hg19_v2_chr22_-_42765174_42765282	0.353469	GLI3	ENST00000432473.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000412060.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000424852.1|Z83851.1|ENSG00000229891.1|Z83851.1
hg19_v2_chr2_-_74648702_74648782	0.35271	GLI3	ENST00000518863.1|C2orf81|ENSG00000159239.7|chromosome 2 open reading frame 81
hg19_v2_chr17_-_79633590_79633678	0.35176	GLI3	ENST00000374741.3|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1 	ENST00000571503.1|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1
hg19_v2_chr17_+_41158742_41158822	0.350552	GLI3	ENST00000415816.2|IFI35|ENSG00000068079.3|interferon-induced protein 35 	ENST00000438323.2|IFI35|ENSG00000068079.3|interferon-induced protein 35
hg19_v2_chr10_-_112255945_112256004	0.350446	GLI3	ENST00000609514.1|RP11-525A16.4|ENSG00000273143.1|RP11-525A16.4	ENST00000607952.1|RP11-525A16.4|ENSG00000273143.1|RP11-525A16.4
hg19_v2_chr19_+_7599128_7599150	0.350383	GLI3	ENST00000545201.2|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr12_+_112191694_112191694	0.350048	GLI3	ENST00000546840.2|RP11-162P23.2|ENSG00000257767.2|RP11-162P23.2
hg19_v2_chr19_-_42931567_42931581	0.348932	GLI3	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr15_+_29211570_29211611	0.348447	GLI3	ENST00000558804.1|APBA2|ENSG00000034053.10|amyloid beta (A4) precursor protein-binding, family A, member 2
hg19_v2_chr8_+_21916710_21916734	0.348264	GLI3	ENST00000523266.1|DMTN|ENSG00000158856.13|dematin actin binding protein 	ENST00000519907.1|DMTN|ENSG00000158856.13|dematin actin binding protein
hg19_v2_chr3_-_128840604_128840993	0.347721	GLI3	ENST00000476465.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000315150.5|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393304.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393308.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393307.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393305.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family
hg19_v2_chr1_+_11724167_11724197	0.346715	GLI3	ENST00000376753.4|FBXO6|ENSG00000116663.6|F-box protein 6
hg19_v2_chr5_-_180242534_180242567	0.345494	GLI3	ENST00000333055.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 	ENST00000513431.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr17_-_202579_202633	0.344427	GLI3	ENST00000577079.1|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000331302.7|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000536489.2|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains)
hg19_v2_chr11_-_69294647_69294708	0.343792	GLI3	ENST00000542064.1|AP000439.3|ENSG00000255774.1|AP000439.3
hg19_v2_chr1_+_17248418_17248445	0.343293	GLI3	ENST00000375541.5|CROCC|ENSG00000058453.12|ciliary rootlet coiled-coil, rootletin
hg19_v2_chr17_+_7210898_7210918	0.343103	GLI3	ENST00000572815.1|EIF5A|ENSG00000132507.13|eukaryotic translation initiation factor 5A
hg19_v2_chr11_+_832944_832994	0.342263	GLI3	ENST00000322008.4|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000397421.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000529810.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000526693.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525333.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000524748.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000527341.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr16_+_2880254_2880278	0.340618	GLI3	ENST00000570670.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr8_+_21916680_21916695	0.340346	GLI3	ENST00000358242.3|DMTN|ENSG00000158856.13|dematin actin binding protein 	ENST00000415253.1|DMTN|ENSG00000158856.13|dematin actin binding protein
hg19_v2_chr17_-_7761256_7761397	0.339488	GLI3	ENST00000575208.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr6_-_33547975_33547999	0.338998	GLI3	ENST00000442998.2|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1 	ENST00000360661.5|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr4_-_40632757_40632803	0.336978	GLI3	ENST00000511902.1|RBM47|ENSG00000163694.10|RNA binding motif protein 47 	ENST00000505220.1|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr19_-_54693401_54693491	0.336664	GLI3	ENST00000338624.6|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chr4_+_189376725_189376779	0.335641	GLI3	ENST00000510832.1|LINC01060|ENSG00000249378.1|long intergenic non-protein coding RNA 1060 	ENST00000510005.1|LINC01060|ENSG00000249378.1|long intergenic non-protein coding RNA 1060 	ENST00000503458.1|LINC01060|ENSG00000249378.1|long intergenic non-protein coding RNA 1060
hg19_v2_chr8_-_145331153_145331153	0.335514	GLI3	ENST00000377412.4|KM-PA-2|ENSG00000204775.4|KM-PA-2 protein; Uncharacterized protein
hg19_v2_chr22_-_38349552_38349676	0.335282	GLI3	ENST00000422191.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000249079.2|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000418863.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000403305.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000403026.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23
hg19_v2_chr19_+_7599597_7599642	0.335231	GLI3	ENST00000414982.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000450331.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr19_-_54618650_54618688	0.334959	GLI3	ENST00000391757.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr16_-_68057770_68057770	0.334715	GLI3	ENST00000332395.5|DDX28|ENSG00000182810.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
hg19_v2_chr22_-_50970506_50970561	0.334426	GLI3	ENST00000428989.2|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000403326.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr11_-_111649015_111649030	0.33376	GLI3	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr2_+_201981527_201981560	0.333652	GLI3	ENST00000441224.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr7_-_56119156_56119163	0.333229	GLI3	ENST00000421312.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000416592.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr17_+_46018872_46019006	0.332504	GLI3	ENST00000583599.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000434554.2|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000225573.4|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000544840.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000534893.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase
hg19_v2_chrX_+_23685653_23685681	0.331772	GLI3	ENST00000379331.3|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr11_+_69061594_69061635	0.33138	GLI3	ENST00000441339.2|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000308946.3|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000535407.1|MYEOV|ENSG00000172927.3|myeloma overexpressed
hg19_v2_chr20_-_22566089_22566097	0.329023	GLI3	ENST00000377115.4|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr2_+_242498135_242498136	0.327674	GLI3	ENST00000318407.3|BOK|ENSG00000176720.3|BCL2-related ovarian killer
hg19_v2_chr6_-_30685214_30685230	0.326664	GLI3	ENST00000425072.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1
hg19_v2_chr1_+_63788730_63788730	0.325397	GLI3	ENST00000371116.2|FOXD3|ENSG00000187140.4|forkhead box D3
hg19_v2_chr20_+_5986756_5986796	0.323981	GLI3	ENST00000452938.1|CRLS1|ENSG00000088766.7|cardiolipin synthase 1
hg19_v2_chr15_+_89164520_89164559	0.322857	GLI3	ENST00000332810.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chr15_+_45694567_45694626	0.32185	GLI3	ENST00000559860.1|SPATA5L1|ENSG00000171763.13|spermatogenesis associated 5-like 1
hg19_v2_chr21_-_45079341_45079400	0.321782	GLI3	ENST00000443485.1|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein 	ENST00000291560.2|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein
hg19_v2_chrX_+_152240819_152240839	0.321402	GLI3	ENST00000421798.3|PNMA6C|ENSG00000235961.3|paraneoplastic Ma antigen family member 6C 	ENST00000535416.1|PNMA6A|ENSG00000224201.3|paraneoplastic Ma antigen family member 6A
hg19_v2_chr17_-_655278_655425	0.320487	GLI3	ENST00000574958.1|GEMIN4|ENSG00000179409.6|gem (nuclear organelle) associated protein 4 	ENST00000437269.1|GEMIN4|ENSG00000179409.6|gem (nuclear organelle) associated protein 4 	ENST00000573482.1|GEMIN4|ENSG00000179409.6|gem (nuclear organelle) associated protein 4
hg19_v2_chr11_+_71939512_71939550	0.319908	GLI3	ENST00000540329.1|INPPL1|ENSG00000165458.9|inositol polyphosphate phosphatase-like 1
hg19_v2_chr19_+_39897453_39897498	0.318889	GLI3	ENST00000597629.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000248673.3|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594045.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594442.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein
hg19_v2_chr19_+_48281946_48281974	0.317391	GLI3	ENST00000595615.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr1_-_230991747_230991782	0.31574	GLI3	ENST00000523410.1|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr22_+_20905269_20905278	0.315595	GLI3	ENST00000457322.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr19_+_48281803_48281829	0.312721	GLI3	ENST00000601048.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr16_-_57837129_57837170	0.311995	GLI3	ENST00000562984.1|KIFC3|ENSG00000140859.11|kinesin family member C3 	ENST00000564891.1|KIFC3|ENSG00000140859.11|kinesin family member C3
hg19_v2_chr10_+_104404644_104404726	0.311059	GLI3	ENST00000462202.2|TRIM8|ENSG00000171206.9|tripartite motif containing 8
hg19_v2_chr17_+_73084038_73084081	0.309231	GLI3	ENST00000578376.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000329783.4|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chr2_-_24307635_24307660	0.309137	GLI3	ENST00000313482.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr20_-_22565101_22565223	0.308248	GLI3	ENST00000419308.2|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr19_+_17337406_17337461	0.308239	GLI3	ENST00000597836.1|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1
hg19_v2_chr10_-_18948156_18948202	0.307536	GLI3	ENST00000414939.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1 	ENST00000449529.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1 	ENST00000456217.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1 	ENST00000444660.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1
hg19_v2_chr19_+_36208877_36208921	0.306793	GLI3	ENST00000420124.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000222270.7|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000341701.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B
hg19_v2_chr16_+_30937213_30937213	0.30594	GLI3	ENST00000427128.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr1_-_16563641_16563709	0.305913	GLI3	ENST00000375599.3|RSG1|ENSG00000132881.7|REM2 and RAB-like small GTPase 1
hg19_v2_chr19_+_39904168_39904468	0.305448	GLI3	ENST00000438123.1|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000409797.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000451354.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
hg19_v2_chr8_-_130587237_130587250	0.304395	GLI3	ENST00000520048.1|CCDC26|ENSG00000229140.4|coiled-coil domain containing 26
hg19_v2_chr3_-_127542051_127542098	0.303789	GLI3	ENST00000398104.1|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr11_-_506739_506821	0.303703	GLI3	ENST00000529306.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000438658.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000527485.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397615.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397614.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1
hg19_v2_chr3_-_137851220_137851236	0.302103	GLI3	ENST00000236709.3|A4GNT|ENSG00000118017.3|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr22_-_50970566_50970644	0.301739	GLI3	ENST00000405135.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000401779.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr1_+_44457261_44457280	0.30147	GLI3	ENST00000372318.3|CCDC24|ENSG00000159214.8|coiled-coil domain containing 24
hg19_v2_chr17_-_39968855_39968880	0.30121	GLI3	ENST00000355468.3|LEPREL4|ENSG00000141696.8|leprecan-like 4 	ENST00000590496.1|LEPREL4|ENSG00000141696.8|leprecan-like 4
hg19_v2_chr22_-_46373004_46373016	0.299413	GLI3	ENST00000339464.4|WNT7B|ENSG00000188064.5|wingless-type MMTV integration site family, member 7B
hg19_v2_chr10_-_27444143_27444195	0.298696	GLI3	ENST00000477432.1|YME1L1|ENSG00000136758.14|YME1-like 1 ATPase
hg19_v2_chr12_-_54779511_54779577	0.298696	GLI3	ENST00000551109.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000546970.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr1_-_139379_139379	0.298654	GLI3	ENST00000423372.3|AL627309.1|ENSG00000237683.5|Uncharacterized protein
hg19_v2_chr7_-_96339132_96339166	0.298533	GLI3	ENST00000413065.1|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1
hg19_v2_chr16_+_2106134_2106163	0.296277	GLI3	ENST00000467949.1|TSC2|ENSG00000103197.12|tuberous sclerosis 2
hg19_v2_chr3_-_127542021_127542050	0.296224	GLI3	ENST00000434178.2|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr17_+_75315654_75315688	0.294928	GLI3	ENST00000590595.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr20_+_43343886_43344020	0.294764	GLI3	ENST00000190983.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr6_-_109776901_109776994	0.294457	GLI3	ENST00000431946.1|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr11_-_7904464_7904511	0.294325	GLI3	ENST00000502624.2|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5	ENST00000527565.1|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5
hg19_v2_chr6_-_33282024_33282046	0.292967	GLI3	ENST00000475304.1|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000489157.1|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chr16_-_75285380_75285580	0.292156	GLI3	ENST00000393420.6|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000162330.5|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr22_-_24322660_24322660	0.291745	GLI3	ENST00000404092.1|DDT|ENSG00000099977.9|D-dopachrome tautomerase
hg19_v2_chr19_+_9945962_9946023	0.291488	GLI3	ENST00000587625.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000247970.4|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000588695.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1
hg19_v2_chr19_-_10679644_10679661	0.288563	GLI3	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr17_+_40714092_40714205	0.288409	GLI3	ENST00000420359.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000449624.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585811.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585909.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000586771.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000421097.2|COASY|ENSG00000068120.10|CoA synthase 	ENST00000591779.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587858.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587214.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587157.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000590958.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000393818.2|COASY|ENSG00000068120.10|CoA synthase
hg19_v2_chr11_+_44087729_44087827	0.288058	GLI3	ENST00000524990.1|ACCS|ENSG00000110455.9|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) 	ENST00000263776.8|ACCS|ENSG00000110455.9|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)
hg19_v2_chr17_-_7137582_7137637	0.287097	GLI3	ENST00000575756.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2 	ENST00000575458.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr20_+_814349_814375	0.286835	GLI3	ENST00000381941.3|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A
hg19_v2_chr1_-_21606013_21606059	0.286738	GLI3	ENST00000357071.4|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr7_+_2687173_2687337	0.28663	GLI3	ENST00000403167.1|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr1_+_36554470_36554519	0.285191	GLI3	ENST00000373178.4|ADPRHL2|ENSG00000116863.10|ADP-ribosylhydrolase like 2
hg19_v2_chr19_+_41816053_41816178	0.283791	GLI3	ENST00000269967.3|CCDC97|ENSG00000142039.3|coiled-coil domain containing 97
hg19_v2_chr9_+_35673853_35673905	0.283539	GLI3	ENST00000378357.4|CA9|ENSG00000107159.8|carbonic anhydrase IX
hg19_v2_chr19_-_18197714_18197750	0.283241	GLI3	ENST00000322153.7|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1
hg19_v2_chrX_-_153707545_153707596	0.281891	GLI3	ENST00000357360.4|LAGE3|ENSG00000196976.5|L antigen family, member 3
hg19_v2_chr8_-_28243590_28243660	0.281017	GLI3	ENST00000523095.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000522795.1|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chr22_-_24951888_24951910	0.279343	GLI3	ENST00000404664.3|GUCD1|ENSG00000138867.12|guanylyl cyclase domain containing 1
hg19_v2_chr17_-_71308119_71308159	0.27902	GLI3	ENST00000439510.2|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4 	ENST00000581014.1|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4 	ENST00000579611.1|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4
hg19_v2_chr2_-_220436248_220436282	0.277212	GLI3	ENST00000265318.4|OBSL1|ENSG00000124006.10|obscurin-like 1
hg19_v2_chr11_-_61124266_61124283	0.276588	GLI3	ENST00000539890.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3
hg19_v2_chr19_+_38893751_38893799	0.276274	GLI3	ENST00000588262.1|FAM98C|ENSG00000130244.8|family with sequence similarity 98, member C 	ENST00000252530.5|FAM98C|ENSG00000130244.8|family with sequence similarity 98, member C 	ENST00000343358.7|FAM98C|ENSG00000130244.8|family with sequence similarity 98, member C
hg19_v2_chr16_-_75299845_75299883	0.275772	GLI3	ENST00000535626.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr12_+_48166978_48167047	0.274687	GLI3	ENST00000442218.2|SLC48A1|ENSG00000211584.9|solute carrier family 48 (heme transporter), member 1
hg19_v2_chr14_-_61124977_61125037	0.274256	GLI3	ENST00000554986.1|SIX1|ENSG00000126778.7|SIX homeobox 1
hg19_v2_chr9_+_139846708_139846780	0.273619	GLI3	ENST00000371633.3|LCN12|ENSG00000184925.7|lipocalin 12
hg19_v2_chr16_+_84682108_84682218	0.27278	GLI3	ENST00000564996.1|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000258157.5|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000567410.1|KLHL36|ENSG00000135686.8|kelch-like family member 36
hg19_v2_chr15_+_75498355_75498390	0.271308	GLI3	ENST00000567617.1|C15orf39|ENSG00000167173.14|chromosome 15 open reading frame 39
hg19_v2_chr21_+_45148735_45148791	0.270643	GLI3	ENST00000327574.4|PDXK|ENSG00000160209.14|pyridoxal (pyridoxine, vitamin B6) kinase
hg19_v2_chr15_+_67430339_67430366	0.269227	GLI3	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr14_+_105941118_105941196	0.268528	GLI3	ENST00000550577.1|CRIP2|ENSG00000182809.6|cysteine-rich protein 2 	ENST00000538259.2|CRIP2|ENSG00000182809.6|cysteine-rich protein 2
hg19_v2_chr5_-_162887054_162887067	0.266987	GLI3	ENST00000517501.1|NUDCD2|ENSG00000170584.6|NudC domain containing 2
hg19_v2_chr18_+_59992514_59992525	0.266917	GLI3	ENST00000269485.7|TNFRSF11A|ENSG00000141655.11|tumor necrosis factor receptor superfamily, member 11a, NFKB activator
hg19_v2_chr4_-_40632881_40632913	0.26684	GLI3	ENST00000511598.1|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr1_-_1243252_1243318	0.265355	GLI3	ENST00000353662.3|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr3_+_187930429_187930477	0.265088	GLI3	ENST00000420410.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr17_-_61920280_61920425	0.264434	GLI3	ENST00000448276.2|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 	ENST00000577990.1|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
hg19_v2_chr10_+_46997926_46997926	0.264273	GLI3	ENST00000374314.4|GPRIN2|ENSG00000204175.4|G protein regulated inducer of neurite outgrowth 2
hg19_v2_chr14_-_102976091_102976133	0.263309	GLI3	ENST00000286918.4|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr20_+_43343517_43343580	0.262771	GLI3	ENST00000372865.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr5_-_180242576_180242585	0.262314	GLI3	ENST00000514438.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr8_+_144766669_144766683	0.261919	GLI3	ENST00000526315.1|ZNF707|ENSG00000181135.11|zinc finger protein 707 	ENST00000532205.1|ZNF707|ENSG00000181135.11|zinc finger protein 707
hg19_v2_chr19_+_1248547_1248562	0.261223	GLI3	ENST00000586757.1|MIDN|ENSG00000167470.8|midnolin 	ENST00000300952.2|MIDN|ENSG00000167470.8|midnolin
hg19_v2_chr19_+_18699599_18699623	0.261193	GLI3	ENST00000450195.2|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chr11_+_832804_832887	0.26096	GLI3	ENST00000397420.3|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525718.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr10_-_77161533_77161590	0.260157	GLI3	ENST00000535216.1|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr20_-_42939782_42939858	0.259387	GLI3	ENST00000396825.3|FITM2|ENSG00000197296.5|fat storage-inducing transmembrane protein 2
hg19_v2_chr7_+_150065278_150065369	0.258858	GLI3	ENST00000519397.1|REPIN1|ENSG00000214022.7|replication initiator 1 	ENST00000479668.1|REPIN1|ENSG00000214022.7|replication initiator 1 	ENST00000540729.1|REPIN1|ENSG00000214022.7|replication initiator 1
hg19_v2_chr20_+_35974532_35974557	0.258853	GLI3	ENST00000373578.2|SRC|ENSG00000197122.7|v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
hg19_v2_chr1_+_201857798_201857836	0.257395	GLI3	ENST00000362011.6|SHISA4|ENSG00000198892.6|shisa family member 4
hg19_v2_chr3_+_47422485_47422562	0.25642	GLI3	ENST00000431726.1|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23 	ENST00000456221.1|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23 	ENST00000265562.4|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23
hg19_v2_chrX_-_148713440_148713568	0.255575	GLI3	ENST00000536359.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000316916.8|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr11_-_559377_559393	0.255355	GLI3	ENST00000486629.1|C11orf35|ENSG00000185522.4|chromosome 11 open reading frame 35
hg19_v2_chr17_+_39968926_39969042	0.255183	GLI3	ENST00000585664.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000585922.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000429461.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr18_-_5238525_5238635	0.254997	GLI3	ENST00000581170.1|RP11-835E18.5|ENSG00000265091.1|RP11-835E18.5	ENST00000579933.1|RP11-835E18.5|ENSG00000265091.1|RP11-835E18.5	ENST00000581067.1|LINC00526|ENSG00000264575.1|long intergenic non-protein coding RNA 526
hg19_v2_chr16_+_616995_617041	0.254483	GLI3	ENST00000293874.2|PIGQ|ENSG00000007541.10|phosphatidylinositol glycan anchor biosynthesis, class Q 	ENST00000424439.2|NHLRC4|ENSG00000257108.1|NHL repeat containing 4 	ENST00000540585.1|NHLRC4|ENSG00000257108.1|NHL repeat containing 4 	ENST00000409527.2|PIGQ|ENSG00000007541.10|phosphatidylinositol glycan anchor biosynthesis, class Q
hg19_v2_chr17_-_7145106_7145172	0.254397	GLI3	ENST00000577035.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr15_+_45938079_45938105	0.254084	GLI3	ENST00000561493.1|SQRDL|ENSG00000137767.9|sulfide quinone reductase-like (yeast)
hg19_v2_chr16_-_2031464_2031550	0.252708	GLI3	ENST00000356120.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1 	ENST00000354249.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1
hg19_v2_chr19_+_677885_677942	0.252387	GLI3	ENST00000591552.2|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr12_-_2966193_2966213	0.251424	GLI3	ENST00000382678.3|AC005841.1|ENSG00000206044.3|Uncharacterized protein ENSP00000372125
hg19_v2_chr8_+_22250334_22250354	0.250076	GLI3	ENST00000520832.1|SLC39A14|ENSG00000104635.9|solute carrier family 39 (zinc transporter), member 14
hg19_v2_chr19_-_39466396_39466550	0.249963	GLI3	ENST00000292852.4|FBXO17|ENSG00000269190.1|F-box protein 17
hg19_v2_chr15_+_75315896_75315956	0.249489	GLI3	ENST00000342932.3|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000564923.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000569562.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000568649.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase
hg19_v2_chr12_-_120687948_120687971	0.249296	GLI3	ENST00000458477.2|PXN|ENSG00000089159.11|paxillin
hg19_v2_chr2_+_128175997_128176020	0.249245	GLI3	ENST00000234071.3|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000429925.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000442644.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000453608.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chr15_+_75628419_75628446	0.249115	GLI3	ENST00000567377.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000562789.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000568301.1|COMMD4|ENSG00000140365.11|COMM domain containing 4
hg19_v2_chr16_+_27324983_27324996	0.248905	GLI3	ENST00000566117.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr19_-_40791302_40791443	0.248418	GLI3	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr17_-_7760457_7760587	0.24796	GLI3	ENST00000576384.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr17_+_75369167_75369272	0.247849	GLI3	ENST00000423034.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr1_-_63782888_63782904	0.24741	GLI3	ENST00000436475.2|LINC00466|ENSG00000224209.2|long intergenic non-protein coding RNA 466
hg19_v2_chr20_-_36152914_36152953	0.247203	GLI3	ENST00000397131.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein
hg19_v2_chr19_+_48281928_48281939	0.24615	GLI3	ENST00000593892.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr16_-_75299884_75299919	0.245979	GLI3	ENST00000538440.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000418647.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr8_-_40200903_40200921	0.245347	GLI3	ENST00000522486.1|CTA-392C11.1|ENSG00000253802.1|CTA-392C11.1
hg19_v2_chr2_+_26785409_26785477	0.24509	GLI3	ENST00000329615.3|C2orf70|ENSG00000173557.10|chromosome 2 open reading frame 70 	ENST00000409392.1|C2orf70|ENSG00000173557.10|chromosome 2 open reading frame 70
hg19_v2_chr16_-_1031259_1031327	0.244483	GLI3	ENST00000563837.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000570014.1|LMF1|ENSG00000103227.14|lipase maturation factor 1 	ENST00000563863.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000565069.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2
hg19_v2_chr9_-_34458531_34458582	0.244388	GLI3	ENST00000379089.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379087.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379084.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379081.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379080.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000422409.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379078.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000445726.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000297620.4|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A
hg19_v2_chr12_+_31226779_31226834	0.243298	GLI3	ENST00000542838.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000407793.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000251758.5|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000228264.6|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000438391.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000415475.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000545668.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000350437.4|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
hg19_v2_chr9_+_131873591_131873622	0.242935	GLI3	ENST00000393370.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000337738.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000348141.5|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr19_+_41860047_41860083	0.242701	GLI3	ENST00000604123.1|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr7_-_155089251_155089375	0.241288	GLI3	ENST00000609974.1|AC144652.1|ENSG00000273117.1|AC144652.1
hg19_v2_chr19_+_41117770_41117817	0.240381	GLI3	ENST00000601032.1|LTBP4|ENSG00000090006.13|latent transforming growth factor beta binding protein 4
hg19_v2_chr16_-_88717423_88717469	0.240314	GLI3	ENST00000568278.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000569359.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000567174.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr20_+_32319463_32319463	0.240038	GLI3	ENST00000342427.2|ZNF341|ENSG00000131061.9|zinc finger protein 341 	ENST00000375200.1|ZNF341|ENSG00000131061.9|zinc finger protein 341
hg19_v2_chr1_-_161014731_161014788	0.239172	GLI3	ENST00000368020.1|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr15_+_74287035_74287117	0.238681	GLI3	ENST00000395132.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268059.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000354026.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268058.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000565898.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569477.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569965.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000567543.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000436891.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000435786.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000564428.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000359928.4|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr9_+_132962843_132962872	0.238496	GLI3	ENST00000458469.1|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr10_+_135192695_135192780	0.237868	GLI3	ENST00000368539.4|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino) 	ENST00000278060.5|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino) 	ENST00000357296.3|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino)
hg19_v2_chr17_+_36873677_36873800	0.237633	GLI3	ENST00000471200.1|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
hg19_v2_chr11_+_64949343_64949454	0.236526	GLI3	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr17_-_3794021_3794042	0.236407	GLI3	ENST00000381769.2|CAMKK1|ENSG00000004660.10|calcium/calmodulin-dependent protein kinase kinase 1, alpha
hg19_v2_chr14_-_107219365_107219365	0.23558	GLI3	ENST00000424969.2|IGHV3-74|ENSG00000224650.2|immunoglobulin heavy variable 3-74
hg19_v2_chr1_-_20834586_20834656	0.23511	GLI3	ENST00000264198.3|MUL1|ENSG00000090432.5|mitochondrial E3 ubiquitin protein ligase 1
hg19_v2_chr8_+_22436635_22436663	0.234543	GLI3	ENST00000452226.1|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397760.4|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000339162.7|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397761.2|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr20_+_33814457_33814506	0.233814	GLI3	ENST00000246186.6|MMP24|ENSG00000125966.8|matrix metallopeptidase 24 (membrane-inserted)
hg19_v2_chr14_+_23344345_23344383	0.23373	GLI3	ENST00000551466.1|LRP10|ENSG00000197324.4|low density lipoprotein receptor-related protein 10
hg19_v2_chr6_-_41747595_41747652	0.23358	GLI3	ENST00000373018.3|FRS3|ENSG00000137218.6|fibroblast growth factor receptor substrate 3
hg19_v2_chr20_-_61885826_61885892	0.233459	GLI3	ENST00000370316.3|NKAIN4|ENSG00000101198.10|Na+/K+ transporting ATPase interacting 4
hg19_v2_chr1_+_9005917_9005946	0.23297	GLI3	ENST00000549778.1|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000480186.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377443.2|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377436.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377442.2|CA6|ENSG00000131686.10|carbonic anhydrase VI
hg19_v2_chr17_+_40118759_40118772	0.231515	GLI3	ENST00000393892.3|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr21_-_33984865_33984883	0.231221	GLI3	ENST00000458138.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr11_+_45907177_45907233	0.231199	GLI3	ENST00000241014.2|MAPK8IP1|ENSG00000121653.7|mitogen-activated protein kinase 8 interacting protein 1
hg19_v2_chr17_-_26697304_26697373	0.231082	GLI3	ENST00000536498.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr9_+_131873227_131873243	0.230921	GLI3	ENST00000358994.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000455292.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr9_-_131872928_131873088	0.230424	GLI3	ENST00000455830.2|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase 	ENST00000393384.3|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase 	ENST00000318080.2|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase
hg19_v2_chr19_-_2740036_2740150	0.230328	GLI3	ENST00000586572.1|AC006538.4|ENSG00000267001.1|Uncharacterized protein  	ENST00000269740.4|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3
hg19_v2_chr15_+_75628394_75628414	0.230209	GLI3	ENST00000564815.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000338995.6|COMMD4|ENSG00000140365.11|COMM domain containing 4
hg19_v2_chr19_-_42758040_42758064	0.230104	GLI3	ENST00000593944.1|ERF|ENSG00000105722.5|Ets2 repressor factor
hg19_v2_chr11_+_3819049_3819202	0.229921	GLI3	ENST00000396986.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000300730.6|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000532535.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000396993.4|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000396991.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000532523.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000459679.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464261.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464906.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464441.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2
hg19_v2_chr7_+_90032821_90032881	0.228463	GLI3	ENST00000427904.1|CLDN12|ENSG00000157224.11|claudin 12
hg19_v2_chr11_+_64052944_64052986	0.228422	GLI3	ENST00000535675.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137 	ENST00000543383.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr4_-_187476721_187476721	0.227936	GLI3	ENST00000307161.5|MTNR1A|ENSG00000168412.6|melatonin receptor 1A
hg19_v2_chr17_+_15848231_15848231	0.227549	GLI3	ENST00000304222.2|ADORA2B|ENSG00000170425.3|adenosine A2b receptor
hg19_v2_chr17_-_79304150_79304215	0.227454	GLI3	ENST00000574093.1|TMEM105|ENSG00000185332.2|transmembrane protein 105
hg19_v2_chr19_+_45312347_45312378	0.22728	GLI3	ENST00000270233.6|BCAM|ENSG00000187244.6|basal cell adhesion molecule (Lutheran blood group) 	ENST00000591520.1|BCAM|ENSG00000187244.6|basal cell adhesion molecule (Lutheran blood group)
hg19_v2_chr3_-_53878644_53878811	0.226422	GLI3	ENST00000481668.1|CHDH|ENSG00000016391.6|choline dehydrogenase 	ENST00000467802.1|CHDH|ENSG00000016391.6|choline dehydrogenase
hg19_v2_chrX_-_153775426_153775469	0.22632	GLI3	ENST00000393562.2|G6PD|ENSG00000160211.11|glucose-6-phosphate dehydrogenase
hg19_v2_chr17_+_7253667_7253740	0.22588	GLI3	ENST00000570504.1|ACAP1|ENSG00000072818.7|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 	ENST00000574499.1|ACAP1|ENSG00000072818.7|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
hg19_v2_chr19_+_44084696_44084790	0.225789	GLI3	ENST00000562255.1|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing 	ENST00000569031.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr19_+_42811093_42811109	0.225461	GLI3	ENST00000595750.1|PRR19|ENSG00000188368.5|proline rich 19
hg19_v2_chr19_+_15783879_15783922	0.225423	GLI3	ENST00000551607.1|CYP4F12|ENSG00000186204.10|cytochrome P450, family 4, subfamily F, polypeptide 12
hg19_v2_chr10_-_134145321_134145369	0.224754	GLI3	ENST00000368625.4|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368619.3|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000456004.1|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368620.2|STK32C|ENSG00000165752.12|serine/threonine kinase 32C
hg19_v2_chr12_-_57522813_57522883	0.223821	GLI3	ENST00000556155.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chrX_+_51928002_51928017	0.22358	GLI3	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr1_-_243418650_243418664	0.223489	GLI3	ENST00000522995.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr3_+_187420101_187420154	0.222894	GLI3	ENST00000449623.1|RP11-211G3.3|ENSG00000228804.1|Uncharacterized protein  	ENST00000437407.1|RP11-211G3.3|ENSG00000228804.1|Uncharacterized protein
hg19_v2_chr16_-_69390209_69390209	0.222683	GLI3	ENST00000563634.1|RP11-343C2.9|ENSG00000260371.1|Uncharacterized protein
hg19_v2_chr7_+_149412094_149412148	0.222515	GLI3	ENST00000255992.10|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1 	ENST00000319551.8|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1
hg19_v2_chrX_-_51812268_51812368	0.22229	GLI3	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr18_+_5238549_5238665	0.222278	GLI3	ENST00000580684.1|LINC00667|ENSG00000263753.2|long intergenic non-protein coding RNA 667
hg19_v2_chr20_-_30310693_30310719	0.222217	GLI3	ENST00000307677.4|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000420653.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr16_+_29984962_29984962	0.221841	GLI3	ENST00000308893.4|TAOK2|ENSG00000149930.13|TAO kinase 2
hg19_v2_chr22_-_24951814_24951834	0.221689	GLI3	ENST00000407973.2|GUCD1|ENSG00000138867.12|guanylyl cyclase domain containing 1
hg19_v2_chr7_+_916183_916204	0.221508	GLI3	ENST00000265857.3|GET4|ENSG00000239857.2|golgi to ER traffic protein 4 homolog (S. cerevisiae)
hg19_v2_chr7_+_75831181_75831236	0.221433	GLI3	ENST00000388802.4|SRRM3|ENSG00000177679.14|serine/arginine repetitive matrix 3 	ENST00000326382.8|SRRM3|ENSG00000177679.14|serine/arginine repetitive matrix 3
hg19_v2_chr1_+_10509971_10510095	0.220939	GLI3	ENST00000320498.4|CORT|ENSG00000241563.2|cortistatin
hg19_v2_chr5_+_140019004_140019068	0.22079	GLI3	ENST00000394671.3|TMCO6|ENSG00000113119.8|transmembrane and coiled-coil domains 6 	ENST00000511410.1|TMCO6|ENSG00000113119.8|transmembrane and coiled-coil domains 6 	ENST00000537378.1|TMCO6|ENSG00000113119.8|transmembrane and coiled-coil domains 6
hg19_v2_chrX_-_53254358_53254406	0.218798	GLI3	ENST00000404049.3|KDM5C|ENSG00000126012.7|lysine (K)-specific demethylase 5C
hg19_v2_chr19_+_55385731_55385746	0.218671	GLI3	ENST00000469767.1|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000355524.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391725.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000345937.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000353758.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000359272.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391723.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391724.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr7_-_156433195_156433348	0.21852	GLI3	ENST00000333319.6|C7orf13|ENSG00000244291.1|chromosome 7 open reading frame 13
hg19_v2_chr1_-_227922934_227923112	0.218437	GLI3	ENST00000366758.3|JMJD4|ENSG00000081692.8|jumonji domain containing 4 	ENST00000438896.2|JMJD4|ENSG00000081692.8|jumonji domain containing 4
hg19_v2_chr18_-_21562500_21562520	0.218393	GLI3	ENST00000582300.2|RP11-403A21.1|ENSG00000265752.2|RP11-403A21.1
hg19_v2_chr2_-_220435963_220436210	0.218245	GLI3	ENST00000373876.1|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000404537.1|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000603926.1|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000373873.4|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000289656.3|OBSL1|ENSG00000124006.10|obscurin-like 1
hg19_v2_chr22_-_30783356_30783415	0.217964	GLI3	ENST00000382363.3|RNF215|ENSG00000099999.10|ring finger protein 215
hg19_v2_chr17_-_80231557_80231607	0.217598	GLI3	ENST00000392334.2|CSNK1D|ENSG00000141551.10|casein kinase 1, delta 	ENST00000314028.6|CSNK1D|ENSG00000141551.10|casein kinase 1, delta
hg19_v2_chr3_-_53080047_53080103	0.217495	GLI3	ENST00000482396.1|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000358080.2|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000296295.6|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000394752.3|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1
hg19_v2_chr7_-_56118981_56119152	0.216498	GLI3	ENST00000419984.2|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000413218.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000424596.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr19_-_41196534_41196568	0.216086	GLI3	ENST00000252891.4|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chr17_+_43239231_43239297	0.21604	GLI3	ENST00000591576.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000591070.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000592695.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr2_-_27434756_27434898	0.215949	GLI3	ENST00000426119.1|SLC5A6|ENSG00000138074.10|solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 	ENST00000412471.1|SLC5A6|ENSG00000138074.10|solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6
hg19_v2_chr16_-_58033762_58033762	0.215505	GLI3	ENST00000299237.2|ZNF319|ENSG00000166188.2|zinc finger protein 319
hg19_v2_chr6_-_33281979_33281992	0.215446	GLI3	ENST00000426633.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000467025.1|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chr7_-_47579188_47579231	0.21527	GLI3	ENST00000398879.1|TNS3|ENSG00000136205.12|tensin 3 	ENST00000355730.3|TNS3|ENSG00000136205.12|tensin 3 	ENST00000442536.2|TNS3|ENSG00000136205.12|tensin 3 	ENST00000458317.2|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr12_-_6798025_6798102	0.215022	GLI3	ENST00000542351.1|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000538829.1|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr21_-_46964306_46964332	0.214127	GLI3	ENST00000443742.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000528477.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000567670.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1
hg19_v2_chr17_+_38516907_38516907	0.21372	GLI3	ENST00000578774.1|CTD-2267D19.3|ENSG00000266208.1|Uncharacterized protein
hg19_v2_chr17_+_7487146_7487211	0.213703	GLI3	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr19_-_10024496_10024529	0.21359	GLI3	ENST00000593091.1|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr19_-_44124019_44124030	0.21237	GLI3	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr10_+_73079000_73079024	0.211077	GLI3	ENST00000373189.5|SLC29A3|ENSG00000198246.7|solute carrier family 29 (equilibrative nucleoside transporter), member 3
hg19_v2_chr11_-_61124711_61124751	0.210984	GLI3	ENST00000536915.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3
hg19_v2_chr9_+_131873659_131873714	0.210277	GLI3	ENST00000452489.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000347048.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000357197.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000445241.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000355007.3|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000414331.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr19_+_45312310_45312332	0.209825	GLI3	ENST00000589651.1|BCAM|ENSG00000187244.6|basal cell adhesion molecule (Lutheran blood group)
hg19_v2_chr11_-_61684962_61685063	0.209712	GLI3	ENST00000394836.2|RAB3IL1|ENSG00000167994.7|RAB3A interacting protein (rabin3)-like 1
hg19_v2_chr19_-_16653325_16653358	0.20948	GLI3	ENST00000546361.2|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr9_-_98079965_98080008	0.208898	GLI3	ENST00000289081.3|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr9_+_135037334_135037450	0.20771	GLI3	ENST00000393229.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000360670.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000393228.4|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000372179.3|NTNG2|ENSG00000196358.6|netrin G2
hg19_v2_chr11_+_118477144_118477156	0.207551	GLI3	ENST00000361417.2|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr10_-_77161004_77161176	0.207446	GLI3	ENST00000418818.2|RP11-399K21.11|ENSG00000270087.1|RP11-399K21.11
hg19_v2_chr19_-_40324255_40324296	0.206955	GLI3	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr17_+_36584662_36584730	0.206878	GLI3	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr19_-_35992780_35992815	0.206859	GLI3	ENST00000593342.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000601650.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000408915.2|DMKN|ENSG00000161249.16|dermokine
hg19_v2_chr7_+_2443202_2443260	0.206849	GLI3	ENST00000258711.6|CHST12|ENSG00000136213.7|carbohydrate (chondroitin 4) sulfotransferase 12
hg19_v2_chr1_-_40105617_40105617	0.206595	GLI3	ENST00000372852.3|HEYL|ENSG00000163909.6|hes-related family bHLH transcription factor with YRPW motif-like
hg19_v2_chr6_-_20212630_20212726	0.20581	GLI3	ENST00000324607.7|MBOAT1|ENSG00000172197.9|membrane bound O-acyltransferase domain containing 1 	ENST00000541730.1|MBOAT1|ENSG00000172197.9|membrane bound O-acyltransferase domain containing 1 	ENST00000536798.1|MBOAT1|ENSG00000172197.9|membrane bound O-acyltransferase domain containing 1
hg19_v2_chr16_-_57798253_57798301	0.205604	GLI3	ENST00000565270.1|KIFC3|ENSG00000140859.11|kinesin family member C3
hg19_v2_chr3_+_187871060_187871102	0.205443	GLI3	ENST00000448637.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr6_-_16761678_16761721	0.205277	GLI3	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr20_-_30310656_30310685	0.204987	GLI3	ENST00000376055.4|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr22_+_45714301_45714339	0.204796	GLI3	ENST00000427777.1|FAM118A|ENSG00000100376.7|family with sequence similarity 118, member A
hg19_v2_chr15_+_75335604_75335633	0.204674	GLI3	ENST00000563393.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase
hg19_v2_chr11_-_64949305_64949305	0.204028	GLI3	ENST00000526623.1|AP003068.23|ENSG00000254614.1|Uncharacterized protein
hg19_v2_chr5_+_150157860_150157883	0.202486	GLI3	ENST00000600109.1|AC010441.1|ENSG00000269636.1|AC010441.1
hg19_v2_chr3_+_159481464_159481502	0.202284	GLI3	ENST00000467377.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr22_+_46692638_46692690	0.201997	GLI3	ENST00000454366.1|GTSE1|ENSG00000075218.14|G-2 and S-phase expressed 1
hg19_v2_chr12_-_57634475_57634532	0.201225	GLI3	ENST00000393825.1|NDUFA4L2|ENSG00000185633.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2
hg19_v2_chr19_-_44285401_44285446	0.201128	GLI3	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr14_+_105452094_105452152	0.200968	GLI3	ENST00000551606.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79 	ENST00000547315.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79
hg19_v2_chr19_-_23578220_23578362	0.200333	GLI3	ENST00000595533.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000397082.2|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000599743.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000300619.7|ZNF91|ENSG00000167232.9|zinc finger protein 91
hg19_v2_chr1_+_61547894_61547980	0.200116	GLI3	ENST00000403491.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr15_-_41047421_41047534	0.199657	GLI3	ENST00000560460.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000338376.3|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000560905.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3
hg19_v2_chr4_-_176733897_176733906	0.199487	GLI3	ENST00000393658.2|GPM6A|ENSG00000150625.12|glycoprotein M6A
hg19_v2_chr7_+_2636522_2636546	0.199344	GLI3	ENST00000423196.1|IQCE|ENSG00000106012.13|IQ motif containing E
hg19_v2_chr16_-_75300679_75300808	0.199309	GLI3	ENST00000420641.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr1_+_201979645_201979721	0.199299	GLI3	ENST00000367284.5|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 	ENST00000367283.3|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v2_chr7_+_102290772_102290772	0.199033	GLI3	ENST00000507450.1|SPDYE2B|ENSG00000173678.10|speedy/RINGO cell cycle regulator family member E2B
hg19_v2_chr16_+_57702099_57702202	0.198631	GLI3	ENST00000333493.4|GPR97|ENSG00000182885.12|G protein-coupled receptor 97 	ENST00000327655.6|GPR97|ENSG00000182885.12|G protein-coupled receptor 97
hg19_v2_chr21_+_45905448_45905460	0.198568	GLI3	ENST00000449713.1|AP001065.15|ENSG00000228709.1|AP001065.15
hg19_v2_chr11_-_414948_415017	0.19826	GLI3	ENST00000530494.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528209.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000431843.2|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528058.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
hg19_v2_chr19_-_2090131_2090175	0.198137	GLI3	ENST00000591326.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr19_-_11494975_11495003	0.197729	GLI3	ENST00000222139.6|EPOR|ENSG00000187266.9|erythropoietin receptor 	ENST00000592375.2|EPOR|ENSG00000187266.9|erythropoietin receptor
hg19_v2_chr19_+_52873166_52873208	0.197672	GLI3	ENST00000424032.2|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000600321.1|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000344085.5|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000597976.1|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000422689.2|ZNF880|ENSG00000221923.4|zinc finger protein 880
hg19_v2_chr8_-_145013711_145013786	0.197672	GLI3	ENST00000345136.3|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr11_+_64009072_64009220	0.197385	GLI3	ENST00000535135.1|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa 	ENST00000394540.3|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa
hg19_v2_chr3_-_47517302_47517451	0.196518	GLI3	ENST00000441517.2|SCAP|ENSG00000114650.14|SREBF chaperone 	ENST00000545718.1|SCAP|ENSG00000114650.14|SREBF chaperone
hg19_v2_chr4_-_48908805_48908821	0.195501	GLI3	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr17_-_43025005_43025149	0.195345	GLI3	ENST00000587309.1|KIF18B|ENSG00000186185.9|kinesin family member 18B 	ENST00000593135.1|KIF18B|ENSG00000186185.9|kinesin family member 18B 	ENST00000339151.4|KIF18B|ENSG00000186185.9|kinesin family member 18B
hg19_v2_chr12_+_57853918_57853934	0.195155	GLI3	ENST00000532291.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000543426.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000228682.2|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000546141.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1
hg19_v2_chr10_-_77161650_77161664	0.19476	GLI3	ENST00000372524.4|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr17_-_73266616_73266702	0.194753	GLI3	ENST00000579194.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing 	ENST00000581777.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing
hg19_v2_chr22_+_25003606_25003622	0.19463	GLI3	ENST00000432867.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr1_-_866445_866445	0.194337	GLI3	ENST00000598827.1|AL645608.1|ENSG00000268179.1|Uncharacterized protein
hg19_v2_chr8_-_144660485_144660521	0.194269	GLI3	ENST00000276844.7|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1 	ENST00000340490.3|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1 	ENST00000435154.3|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1 	ENST00000426292.3|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1
hg19_v2_chr17_-_67323385_67323424	0.193428	GLI3	ENST00000588665.1|ABCA5|ENSG00000154265.11|ATP-binding cassette, sub-family A (ABC1), member 5
hg19_v2_chr19_-_2739992_2740027	0.192966	GLI3	ENST00000545664.1|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3 	ENST00000589363.1|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3 	ENST00000455372.2|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3
hg19_v2_chr17_+_4046462_4046550	0.192899	GLI3	ENST00000577075.2|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000575251.1|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000301391.3|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2
hg19_v2_chr17_+_46185111_46185256	0.19282	GLI3	ENST00000582104.1|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000584335.1|SNX11|ENSG00000002919.10|sorting nexin 11
hg19_v2_chr19_-_10613862_10614060	0.192784	GLI3	ENST00000592055.1|KEAP1|ENSG00000079999.9|kelch-like ECH-associated protein 1
hg19_v2_chr8_-_144660771_144660825	0.192614	GLI3	ENST00000449291.2|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1
hg19_v2_chr19_+_39833036_39833108	0.192068	GLI3	ENST00000602243.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000598913.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000314471.6|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B
hg19_v2_chr7_+_56131917_56132014	0.192006	GLI3	ENST00000434526.2|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000275607.9|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000395435.2|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000413952.2|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000342190.6|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000437307.2|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000413756.1|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000451338.1|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2
hg19_v2_chr1_+_1217489_1217576	0.191175	GLI3	ENST00000325425.8|SCNN1D|ENSG00000162572.15|sodium channel, non-voltage-gated 1, delta subunit 	ENST00000400928.3|SCNN1D|ENSG00000162572.15|sodium channel, non-voltage-gated 1, delta subunit
hg19_v2_chr8_+_22436248_22436259	0.189962	GLI3	ENST00000308354.7|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr19_+_45418067_45418126	0.18979	GLI3	ENST00000589078.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000586638.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr12_-_125348448_125348472	0.189537	GLI3	ENST00000339570.5|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr2_-_85839146_85839198	0.189253	GLI3	ENST00000306336.5|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68 	ENST00000409734.3|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68
hg19_v2_chr1_+_47901689_47901689	0.189235	GLI3	ENST00000334793.5|FOXD2|ENSG00000186564.5|forkhead box D2
hg19_v2_chr12_-_125348329_125348419	0.188763	GLI3	ENST00000546215.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000415380.2|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000261693.6|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000376788.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000545493.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr11_-_61646054_61646115	0.188274	GLI3	ENST00000527379.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr1_-_2343951_2344018	0.187652	GLI3	ENST00000288774.3|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10 	ENST00000507596.1|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10 	ENST00000447513.2|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10
hg19_v2_chr3_+_38495333_38495422	0.187498	GLI3	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr19_-_16653226_16653275	0.187405	GLI3	ENST00000198939.6|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr4_-_38666430_38666526	0.187366	GLI3	ENST00000436901.1|AC021860.1|ENSG00000196355.2|Uncharacterized protein
hg19_v2_chr17_-_7760779_7760896	0.186939	GLI3	ENST00000335155.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575071.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr22_-_20255212_20255212	0.186629	GLI3	ENST00000416372.1|RTN4R|ENSG00000040608.9|reticulon 4 receptor
hg19_v2_chr11_+_2415061_2415109	0.186558	GLI3	ENST00000481687.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr12_+_14927270_14927347	0.186209	GLI3	ENST00000544848.1|H2AFJ|ENSG00000246705.3|H2A histone family, member J
hg19_v2_chr16_-_2059748_2059777	0.185997	GLI3	ENST00000562103.1|ZNF598|ENSG00000167962.8|zinc finger protein 598 	ENST00000431526.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr16_-_2059797_2059837	0.18595	GLI3	ENST00000563630.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr2_+_131769256_131769328	0.185917	GLI3	ENST00000355771.3|ARHGEF4|ENSG00000136002.12|Rho guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr11_-_8615720_8615836	0.185835	GLI3	ENST00000358872.3|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000454443.2|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr12_-_54778244_54778378	0.185682	GLI3	ENST00000549937.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr11_-_1783633_1783656	0.184762	GLI3	ENST00000367196.3|CTSD|ENSG00000117984.8|cathepsin D
hg19_v2_chr12_-_10766184_10766222	0.184625	GLI3	ENST00000539554.1|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000381881.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000320756.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila)
hg19_v2_chr19_-_55549624_55549639	0.184337	GLI3	ENST00000417454.1|GP6|ENSG00000088053.7|glycoprotein VI (platelet) 	ENST00000310373.3|GP6|ENSG00000088053.7|glycoprotein VI (platelet) 	ENST00000333884.2|GP6|ENSG00000088053.7|glycoprotein VI (platelet)
hg19_v2_chr11_+_44087862_44087904	0.184009	GLI3	ENST00000432284.2|ACCS|ENSG00000110455.9|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)
hg19_v2_chr20_+_48884002_48884088	0.180871	GLI3	ENST00000425497.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3	ENST00000445003.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3
hg19_v2_chr19_+_54705025_54705034	0.18053	GLI3	ENST00000441429.1|RPS9|ENSG00000170889.9|ribosomal protein S9
hg19_v2_chr17_+_39969183_39969265	0.180395	GLI3	ENST00000321562.4|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chrX_-_1656000_1656043	0.180216	GLI3	ENST00000381297.4|P2RY8|ENSG00000182162.5|purinergic receptor P2Y, G-protein coupled, 8
hg19_v2_chr17_-_17494972_17495037	0.179656	GLI3	ENST00000435340.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000255389.5|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000395781.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase
hg19_v2_chr7_-_108097144_108097175	0.178978	GLI3	ENST00000418239.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr6_-_30684898_30684957	0.178628	GLI3	ENST00000422266.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1 	ENST00000416571.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1
hg19_v2_chr22_+_39760130_39760175	0.178596	GLI3	ENST00000381535.4|SYNGR1|ENSG00000100321.10|synaptogyrin 1
hg19_v2_chr11_-_75062730_75062775	0.178339	GLI3	ENST00000420843.2|ARRB1|ENSG00000137486.12|arrestin, beta 1 	ENST00000360025.3|ARRB1|ENSG00000137486.12|arrestin, beta 1
hg19_v2_chr1_+_155178481_155178493	0.178242	GLI3	ENST00000368376.3|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr16_+_55522536_55522599	0.178032	GLI3	ENST00000570283.1|MMP2|ENSG00000087245.8|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)
hg19_v2_chr16_-_89724051_89724062	0.177933	GLI3	ENST00000550102.1|CHMP1A|ENSG00000131165.10|charged multivesicular body protein 1A
hg19_v2_chr11_-_46615498_46615675	0.177907	GLI3	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr12_+_133707570_133707570	0.177896	GLI3	ENST00000416488.1|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000540096.2|CTD-2140B24.4|ENSG00000256825.4|Zinc finger protein 268
hg19_v2_chr3_-_149293990_149294039	0.177894	GLI3	ENST00000472417.1|WWTR1|ENSG00000018408.10|WW domain containing transcription regulator 1
hg19_v2_chr19_+_35820064_35820115	0.177889	GLI3	ENST00000341773.6|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000600131.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000270311.6|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000595780.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000597916.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000593867.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000600424.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000599811.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000536635.2|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000085219.5|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000544992.2|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000419549.2|CD22|ENSG00000012124.10|CD22 molecule
hg19_v2_chr14_+_76044934_76044982	0.177489	GLI3	ENST00000238667.4|FLVCR2|ENSG00000119686.5|feline leukemia virus subgroup C cellular receptor family, member 2
hg19_v2_chr11_+_64085560_64085736	0.177334	GLI3	ENST00000265462.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5 	ENST00000352435.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5 	ENST00000347941.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5
hg19_v2_chr6_-_31763721_31763734	0.176582	GLI3	ENST00000375663.3|VARS|ENSG00000204394.8|valyl-tRNA synthetase
hg19_v2_chr11_-_65150103_65150148	0.176519	GLI3	ENST00000294187.6|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000398802.1|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000360662.3|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000377152.2|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000530936.1|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45
hg19_v2_chr8_-_145028013_145028088	0.174846	GLI3	ENST00000354958.2|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr7_-_112726393_112726567	0.173831	GLI3	ENST00000449591.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000449735.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000438062.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000424100.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85
hg19_v2_chr11_+_64949158_64949216	0.173765	GLI3	ENST00000527739.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000526966.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533129.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000524773.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr1_-_120190396_120190396	0.173583	GLI3	ENST00000421812.2|ZNF697|ENSG00000143067.4|zinc finger protein 697
hg19_v2_chr19_-_44100275_44100302	0.173291	GLI3	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr19_+_7598890_7599090	0.173243	GLI3	ENST00000221249.6|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601668.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601001.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr3_+_57094469_57094469	0.173224	GLI3	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chr15_+_85923856_85923987	0.172867	GLI3	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr4_-_40632844_40632877	0.172781	GLI3	ENST00000505414.1|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr9_+_137533615_137533660	0.172714	GLI3	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr11_+_134094508_134094617	0.172303	GLI3	ENST00000281187.5|VPS26B|ENSG00000151502.6|vacuolar protein sorting 26 homolog B (S. pombe) 	ENST00000525095.2|VPS26B|ENSG00000151502.6|vacuolar protein sorting 26 homolog B (S. pombe)
hg19_v2_chr16_+_86612112_86612123	0.172271	GLI3	ENST00000320241.3|FOXL1|ENSG00000176678.4|forkhead box L1
hg19_v2_chrX_-_152245978_152245978	0.171587	GLI3	ENST00000538162.2|PNMA6D|ENSG00000257088.2|paraneoplastic Ma antigen family member 6D (pseudogene)
hg19_v2_chr3_+_187930491_187930511	0.17124	GLI3	ENST00000443217.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr11_-_61124776_61124819	0.170808	GLI3	ENST00000542361.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3
hg19_v2_chr19_+_36024310_36024329	0.169357	GLI3	ENST00000222286.4|GAPDHS|ENSG00000105679.4|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
hg19_v2_chr6_-_163834852_163834992	0.16934	GLI3	ENST00000604200.1|CAHM|ENSG00000270419.1|colon adenocarcinoma hypermethylated (non-protein coding)
hg19_v2_chr7_-_41742697_41742714	0.169331	GLI3	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr3_-_123123407_123123440	0.168683	GLI3	ENST00000466617.1|ADCY5|ENSG00000173175.10|adenylate cyclase 5
hg19_v2_chr17_+_40118805_40118900	0.168407	GLI3	ENST00000591072.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000587679.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000393888.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000441615.2|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr14_+_103592636_103592664	0.168313	GLI3	ENST00000333007.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chr19_+_35491174_35491242	0.167849	GLI3	ENST00000317991.5|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000504615.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr6_+_90272488_90272564	0.167736	GLI3	ENST00000485637.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6 	ENST00000522705.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6
hg19_v2_chr1_+_183774240_183774270	0.167474	GLI3	ENST00000360851.3|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr10_-_46970474_46970515	0.166859	GLI3	ENST00000503753.1|SYT15|ENSG00000204176.9|synaptotagmin XV 	ENST00000374321.4|SYT15|ENSG00000204176.9|synaptotagmin XV
hg19_v2_chr7_-_45026200_45026273	0.166132	GLI3	ENST00000577700.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000580458.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000579383.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000584686.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000585030.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000582727.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr10_+_48359344_48359376	0.165816	GLI3	ENST00000412534.1|ZNF488|ENSG00000165388.8|zinc finger protein 488 	ENST00000444585.1|ZNF488|ENSG00000165388.8|zinc finger protein 488
hg19_v2_chr12_-_54778471_54778528	0.165602	GLI3	ENST00000550120.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000394313.2|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000547210.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr19_-_49250054_49250166	0.165593	GLI3	ENST00000602105.1|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1 	ENST00000332955.2|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1
hg19_v2_chr1_+_36621529_36621585	0.165343	GLI3	ENST00000316156.4|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr19_-_4722780_4722790	0.164964	GLI3	ENST00000600621.1|DPP9|ENSG00000142002.12|dipeptidyl-peptidase 9
hg19_v2_chr12_-_57030115_57030177	0.164869	GLI3	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr6_-_26032288_26032337	0.164612	GLI3	ENST00000244661.2|HIST1H3B|ENSG00000124693.2|histone cluster 1, H3b
hg19_v2_chr8_+_23104130_23104184	0.164404	GLI3	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr16_+_57653989_57654022	0.164296	GLI3	ENST00000567835.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000569372.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000563548.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562003.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr1_-_153538292_153538342	0.164167	GLI3	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr11_+_45868957_45869044	0.164159	GLI3	ENST00000443527.2|CRY2|ENSG00000121671.7|cryptochrome 2 (photolyase-like)
hg19_v2_chr6_+_41010293_41010457	0.163961	GLI3	ENST00000373161.1|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000373158.2|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000470917.1|TSPO2|ENSG00000112212.7|translocator protein 2
hg19_v2_chr18_+_21594384_21594539	0.163143	GLI3	ENST00000584250.1|TTC39C|ENSG00000168234.8|tetratricopeptide repeat domain 39C
hg19_v2_chr19_+_40697514_40697651	0.162396	GLI3	ENST00000253055.3|MAP3K10|ENSG00000130758.3|mitogen-activated protein kinase kinase kinase 10
hg19_v2_chr6_-_75994025_75994057	0.162188	GLI3	ENST00000518161.1|TMEM30A|ENSG00000112697.11|transmembrane protein 30A
hg19_v2_chr19_+_3721719_3721744	0.161835	GLI3	ENST00000589378.1|TJP3|ENSG00000105289.10|tight junction protein 3 	ENST00000382008.3|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr11_-_71781096_71781147	0.161778	GLI3	ENST00000535087.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1 	ENST00000535838.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr19_+_36602104_36602105	0.161741	GLI3	ENST00000585332.1|OVOL3|ENSG00000105261.5|ovo-like zinc finger 3 	ENST00000262637.4|OVOL3|ENSG00000105261.5|ovo-like zinc finger 3
hg19_v2_chrX_+_22056165_22056173	0.161414	GLI3	ENST00000535894.1|PHEX|ENSG00000102174.7|phosphate regulating endopeptidase homolog, X-linked
hg19_v2_chr2_-_224702740_224702761	0.161327	GLI3	ENST00000444408.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr19_+_17448348_17448406	0.160808	GLI3	ENST00000324894.8|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial) 	ENST00000358792.7|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial) 	ENST00000600625.1|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial)
hg19_v2_chr5_+_98109322_98109350	0.159981	GLI3	ENST00000513185.1|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr3_+_52007693_52007737	0.159459	GLI3	ENST00000494478.1|ABHD14A|ENSG00000248487.4|abhydrolase domain containing 14A
hg19_v2_chr9_-_132404374_132404450	0.158371	GLI3	ENST00000277459.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000450050.2|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000277458.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6
hg19_v2_chr17_+_79071365_79071401	0.158166	GLI3	ENST00000576756.1|BAIAP2|ENSG00000175866.11|BAI1-associated protein 2
hg19_v2_chr6_+_89790490_89790506	0.157713	GLI3	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr5_-_149792295_149792332	0.15747	GLI3	ENST00000518797.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000524315.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000009530.7|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000377795.3|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain
hg19_v2_chr15_+_59499031_59499054	0.157378	GLI3	ENST00000307144.4|LDHAL6B|ENSG00000171989.4|lactate dehydrogenase A-like 6B
hg19_v2_chr17_-_73851285_73851501	0.156547	GLI3	ENST00000589642.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000593002.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000590221.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000344296.4|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000587374.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000585462.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000433525.2|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000254806.3|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr19_+_7011509_7011526	0.156379	GLI3	ENST00000377296.3|AC025278.1|ENSG00000204752.3|Uncharacterized protein
hg19_v2_chr17_-_73267214_73267277	0.15617	GLI3	ENST00000580717.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing 	ENST00000577542.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing 	ENST00000579612.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing 	ENST00000245551.5|MIF4GD|ENSG00000125457.9|MIF4G domain containing
hg19_v2_chr15_+_45544426_45544451	0.155661	GLI3	ENST00000347644.3|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2 	ENST00000560438.1|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2
hg19_v2_chr1_+_153940741_153940786	0.155433	GLI3	ENST00000431292.1|CREB3L4|ENSG00000143578.11|cAMP responsive element binding protein 3-like 4
hg19_v2_chr19_-_16008880_16008930	0.155129	GLI3	ENST00000011989.7|CYP4F2|ENSG00000186115.8|cytochrome P450, family 4, subfamily F, polypeptide 2 	ENST00000221700.6|CYP4F2|ENSG00000186115.8|cytochrome P450, family 4, subfamily F, polypeptide 2
hg19_v2_chr17_-_4710288_4710311	0.154932	GLI3	ENST00000571067.1|RP11-81A22.5|ENSG00000262165.1|RP11-81A22.5
hg19_v2_chr3_-_107596910_107596940	0.154541	GLI3	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chr3_-_49066811_49066851	0.15391	GLI3	ENST00000442157.1|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2 	ENST00000326739.4|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2
hg19_v2_chr15_-_43212836_43212991	0.153844	GLI3	ENST00000566931.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000564431.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000567274.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chr16_+_57653854_57653968	0.153792	GLI3	ENST00000568908.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568909.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566778.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000561988.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr20_+_62666902_62667016	0.153663	GLI3	ENST00000431158.1|LINC00176|ENSG00000196421.3|long intergenic non-protein coding RNA 176
hg19_v2_chr19_-_42573650_42573726	0.152987	GLI3	ENST00000593562.1|GRIK5|ENSG00000105737.5|glutamate receptor, ionotropic, kainate 5
hg19_v2_chr12_-_7261772_7261874	0.152705	GLI3	ENST00000545280.1|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like 	ENST00000543933.1|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like 	ENST00000545337.1|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like 	ENST00000544702.1|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like 	ENST00000266542.4|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like
hg19_v2_chr9_-_8857776_8857878	0.152625	GLI3	ENST00000481079.1|PTPRD|ENSG00000153707.11|protein tyrosine phosphatase, receptor type, D
hg19_v2_chr10_+_134000404_134000432	0.152346	GLI3	ENST00000338492.4|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4 	ENST00000368629.1|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4
hg19_v2_chr2_+_111490161_111490216	0.151762	GLI3	ENST00000340561.4|ACOXL|ENSG00000153093.14|acyl-CoA oxidase-like
hg19_v2_chr12_-_56122761_56123004	0.15124	GLI3	ENST00000552164.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000420846.3|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000257857.4|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr3_-_10052763_10052816	0.150902	GLI3	ENST00000383808.2|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000426698.1|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000470827.2|EMC3|ENSG00000125037.8|ER membrane protein complex subunit 3
hg19_v2_chr9_+_4839762_4839779	0.150689	GLI3	ENST00000448872.2|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1 	ENST00000441844.1|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr3_-_39196049_39196062	0.150501	GLI3	ENST00000514182.1|CSRNP1|ENSG00000144655.10|cysteine-serine-rich nuclear protein 1
hg19_v2_chr8_-_145652336_145652378	0.150002	GLI3	ENST00000529182.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000526054.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr15_+_91478493_91478551	0.149718	GLI3	ENST00000418476.2|UNC45A|ENSG00000140553.12|unc-45 homolog A (C. elegans)
hg19_v2_chr1_-_160549235_160549306	0.149254	GLI3	ENST00000368054.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368048.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000311224.4|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368051.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000534968.1|CD84|ENSG00000066294.10|CD84 molecule
hg19_v2_chr12_+_6977258_6977319	0.149065	GLI3	ENST00000488464.2|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000535434.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000493987.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1
hg19_v2_chr17_-_1419941_1419969	0.148897	GLI3	ENST00000498390.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr19_-_20844368_20844407	0.148676	GLI3	ENST00000595094.1|CTC-513N18.7|ENSG00000269110.1|CTC-513N18.7	ENST00000601440.1|ZNF626|ENSG00000188171.10|zinc finger protein 626 	ENST00000291750.6|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr22_+_25003626_25003645	0.148501	GLI3	ENST00000451366.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000406383.2|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000428855.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr22_-_50964849_50964903	0.148378	GLI3	ENST00000543927.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein 	ENST00000423348.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein
hg19_v2_chr6_+_35704855_35704874	0.148211	GLI3	ENST00000288065.2|ARMC12|ENSG00000157343.4|armadillo repeat containing 12 	ENST00000373866.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr9_-_95896550_95896570	0.148001	GLI3	ENST00000375446.4|NINJ1|ENSG00000131669.5|ninjurin 1
hg19_v2_chr1_+_24117662_24117682	0.146501	GLI3	ENST00000420982.1|LYPLA2|ENSG00000011009.6|lysophospholipase II 	ENST00000374505.2|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr19_-_41196458_41196490	0.146465	GLI3	ENST00000598779.1|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chr22_+_20008646_20008662	0.146356	GLI3	ENST00000401833.1|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila)
hg19_v2_chrX_+_49020121_49020334	0.146284	GLI3	ENST00000415364.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked 	ENST00000376338.3|MAGIX|ENSG00000017621.11|MAGI family member, X-linked 	ENST00000425285.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked
hg19_v2_chr1_+_233765353_233765391	0.146078	GLI3	ENST00000366620.1|KCNK1|ENSG00000135750.10|potassium channel, subfamily K, member 1
hg19_v2_chr19_-_48894104_48894170	0.14604	GLI3	ENST00000597017.1|KDELR1|ENSG00000105438.4|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
hg19_v2_chr19_+_3708376_3708501	0.14555	GLI3	ENST00000539908.2|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr17_+_40172097_40172175	0.144548	GLI3	ENST00000393880.1|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000393881.3|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000462043.2|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000449471.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000316082.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2
hg19_v2_chr19_-_21512144_21512191	0.144301	GLI3	ENST00000602023.1|ZNF708|ENSG00000182141.5|zinc finger protein 708
hg19_v2_chr22_+_45064593_45064656	0.14372	GLI3	ENST00000432186.1|PRR5|ENSG00000186654.16|proline rich 5 (renal)
hg19_v2_chr6_-_42016385_42016706	0.143713	GLI3	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr9_-_127952032_127952098	0.143534	GLI3	ENST00000456642.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373546.3|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373547.4|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit
hg19_v2_chr17_+_7761013_7761074	0.142975	GLI3	ENST00000571846.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr17_-_7761172_7761209	0.142836	GLI3	ENST00000333775.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575771.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr11_+_57435441_57435628	0.142749	GLI3	ENST00000528177.1|ZDHHC5|ENSG00000156599.6|zinc finger, DHHC-type containing 5
hg19_v2_chr1_-_40042416_40042470	0.142404	GLI3	ENST00000372857.3|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000372856.3|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000531243.2|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000451091.2|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form)
hg19_v2_chr6_-_3752222_3752260	0.142365	GLI3	ENST00000380283.4|PXDC1|ENSG00000168994.9|PX domain containing 1
hg19_v2_chr7_-_112430427_112430478	0.142334	GLI3	ENST00000449743.1|TMEM168|ENSG00000146802.8|transmembrane protein 168 	ENST00000441474.1|TMEM168|ENSG00000146802.8|transmembrane protein 168 	ENST00000454074.1|TMEM168|ENSG00000146802.8|transmembrane protein 168 	ENST00000447395.1|TMEM168|ENSG00000146802.8|transmembrane protein 168
hg19_v2_chr6_-_29600832_29600982	0.140976	GLI3	ENST00000377016.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000376977.3|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000377034.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr11_+_117070904_117070971	0.140788	GLI3	ENST00000529792.1|TAGLN|ENSG00000149591.12|transgelin
hg19_v2_chr22_+_50925213_50925305	0.140211	GLI3	ENST00000395733.3|MIOX|ENSG00000100253.8|myo-inositol oxygenase 	ENST00000216075.6|MIOX|ENSG00000100253.8|myo-inositol oxygenase 	ENST00000395732.3|MIOX|ENSG00000100253.8|myo-inositol oxygenase
hg19_v2_chr17_+_4710391_4710500	0.14001	GLI3	ENST00000263088.6|PLD2|ENSG00000129219.9|phospholipase D2 	ENST00000572940.1|PLD2|ENSG00000129219.9|phospholipase D2
hg19_v2_chr2_+_97481974_97482015	0.139755	GLI3	ENST00000377060.3|CNNM3|ENSG00000168763.11|cyclin M3 	ENST00000305510.3|CNNM3|ENSG00000168763.11|cyclin M3
hg19_v2_chr17_-_3867585_3867748	0.13969	GLI3	ENST00000359983.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000352011.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397043.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397041.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397035.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397039.1|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000309890.7|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous
hg19_v2_chr16_+_22524379_22524379	0.138789	GLI3	ENST00000536620.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr15_+_63569731_63569783	0.138402	GLI3	ENST00000261879.5|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit
hg19_v2_chr16_+_725650_725716	0.138248	GLI3	ENST00000352681.3|RHBDL1|ENSG00000103269.9|rhomboid, veinlet-like 1 (Drosophila) 	ENST00000561556.1|RHBDL1|ENSG00000103269.9|rhomboid, veinlet-like 1 (Drosophila)
hg19_v2_chr1_+_155178518_155178600	0.137423	GLI3	ENST00000316721.4|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr16_+_56691606_56691719	0.136891	GLI3	ENST00000334350.6|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr19_+_29097595_29097640	0.136761	GLI3	ENST00000587961.1|AC079466.1|ENSG00000266976.1|AC079466.1
hg19_v2_chr17_+_73996987_73996987	0.136318	GLI3	ENST00000588812.1|CDK3|ENSG00000250506.2|cyclin-dependent kinase 3 	ENST00000448471.1|CDK3|ENSG00000250506.2|cyclin-dependent kinase 3
hg19_v2_chr4_-_48908737_48908799	0.136315	GLI3	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr14_-_51561784_51561854	0.136211	GLI3	ENST00000360392.4|TRIM9|ENSG00000100505.9|tripartite motif containing 9
hg19_v2_chr9_-_139334247_139334302	0.136192	GLI3	ENST00000371712.3|INPP5E|ENSG00000148384.11|inositol polyphosphate-5-phosphatase, 72 kDa
hg19_v2_chr11_+_114168085_114168222	0.135822	GLI3	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr19_-_2256405_2256428	0.135648	GLI3	ENST00000300961.6|JSRP1|ENSG00000167476.6|junctional sarcoplasmic reticulum protein 1
hg19_v2_chr5_+_179247759_179247921	0.135616	GLI3	ENST00000389805.4|SQSTM1|ENSG00000161011.15|sequestosome 1 	ENST00000504627.1|SQSTM1|ENSG00000161011.15|sequestosome 1 	ENST00000402874.3|SQSTM1|ENSG00000161011.15|sequestosome 1 	ENST00000510187.1|SQSTM1|ENSG00000161011.15|sequestosome 1
hg19_v2_chr8_-_145653885_145653937	0.135316	GLI3	ENST00000531032.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000292510.4|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000377348.2|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000530790.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000533806.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr3_-_48470838_48470872	0.135177	GLI3	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr20_+_42984330_42984445	0.134991	GLI3	ENST00000316673.4|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609795.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000457232.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609262.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha
hg19_v2_chr19_+_36142147_36142211	0.134844	GLI3	ENST00000590618.1|COX6B1|ENSG00000126267.4|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)
hg19_v2_chr12_-_57504069_57504123	0.134762	GLI3	ENST00000543873.2|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000554663.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000557635.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr17_-_79827808_79827882	0.1345	GLI3	ENST00000580685.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha
hg19_v2_chrX_+_48911090_48911113	0.134302	GLI3	ENST00000597275.1|CCDC120|ENSG00000147144.8|coiled-coil domain containing 120
hg19_v2_chr3_+_58291965_58292038	0.134223	GLI3	ENST00000445193.3|RPP14|ENSG00000163684.7|ribonuclease P/MRP 14kDa subunit 	ENST00000295959.5|RPP14|ENSG00000163684.7|ribonuclease P/MRP 14kDa subunit 	ENST00000466547.1|RPP14|ENSG00000163684.7|ribonuclease P/MRP 14kDa subunit
hg19_v2_chr19_-_40596767_40596825	0.134109	GLI3	ENST00000599972.1|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000450241.2|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000595687.2|ZNF780A|ENSG00000197782.10|zinc finger protein 780A
hg19_v2_chr15_+_41186609_41186636	0.133651	GLI3	ENST00000220509.5|VPS18|ENSG00000104142.6|vacuolar protein sorting 18 homolog (S. cerevisiae)
hg19_v2_chr1_-_31845914_31845931	0.133605	GLI3	ENST00000373713.2|FABP3|ENSG00000121769.3|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)
hg19_v2_chr3_-_9811595_9811666	0.133181	GLI3	ENST00000256460.3|CAMK1|ENSG00000134072.6|calcium/calmodulin-dependent protein kinase I
hg19_v2_chr12_-_108991778_108991800	0.133123	GLI3	ENST00000549447.1|TMEM119|ENSG00000183160.8|transmembrane protein 119
hg19_v2_chr16_-_30064244_30064299	0.132968	GLI3	ENST00000571269.1|FAM57B|ENSG00000149926.9|family with sequence similarity 57, member B 	ENST00000561666.1|FAM57B|ENSG00000149926.9|family with sequence similarity 57, member B
hg19_v2_chr14_+_29236269_29236287	0.132964	GLI3	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr16_-_88923285_88923388	0.132816	GLI3	ENST00000542788.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000569433.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000268695.5|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000568311.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase
hg19_v2_chr16_-_11681316_11681419	0.132011	GLI3	ENST00000571688.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr12_-_118490217_118490269	0.13173	GLI3	ENST00000542304.1|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr10_+_104503727_104503748	0.131684	GLI3	ENST00000448841.1|WBP1L|ENSG00000166272.12|WW domain binding protein 1-like
hg19_v2_chr3_-_196756646_196756725	0.131677	GLI3	ENST00000439320.1|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296351.4|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296350.5|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5
hg19_v2_chr8_+_144328991_144329280	0.13117	GLI3	ENST00000520584.1|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000330701.4|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000522452.1|ZFP41|ENSG00000264668.1|ZFP41
hg19_v2_chr22_+_25465786_25465936	0.130844	GLI3	ENST00000401395.1|KIAA1671|ENSG00000197077.8|KIAA1671
hg19_v2_chrX_+_49020882_49020882	0.130759	GLI3	ENST00000454342.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked
hg19_v2_chr17_-_43502987_43503004	0.130616	GLI3	ENST00000376922.2|ARHGAP27|ENSG00000159314.7|Rho GTPase activating protein 27
hg19_v2_chr11_+_2407287_2407325	0.130245	GLI3	ENST00000381036.3|CD81|ENSG00000110651.7|CD81 molecule 	ENST00000492252.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr19_+_41856816_41856871	0.130041	GLI3	ENST00000539627.1|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr13_+_115047053_115047095	0.12973	GLI3	ENST00000375299.3|UPF3A|ENSG00000169062.10|UPF3 regulator of nonsense transcripts homolog A (yeast)
hg19_v2_chr17_+_18996287_18996287	0.129599	GLI3	ENST00000399091.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042  	ENST00000443876.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042  	ENST00000428928.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042
hg19_v2_chr7_-_767249_767307	0.129458	GLI3	ENST00000403562.1|PRKAR1B|ENSG00000188191.10|protein kinase, cAMP-dependent, regulatory, type I, beta
hg19_v2_chr1_-_226111929_226112026	0.128708	GLI3	ENST00000343818.6|PYCR2|ENSG00000143811.12|pyrroline-5-carboxylate reductase family, member 2 	ENST00000432920.2|RP4-559A3.7|ENSG00000255835.1|Uncharacterized protein
hg19_v2_chr22_+_44427230_44427253	0.128675	GLI3	ENST00000444029.1|PARVB|ENSG00000188677.10|parvin, beta
hg19_v2_chr12_-_49523896_49524032	0.128595	GLI3	ENST00000549870.1|TUBA1B|ENSG00000123416.11|tubulin, alpha 1b
hg19_v2_chr9_-_101017900_101017951	0.127877	GLI3	ENST00000375066.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr1_+_11994715_11994833	0.127597	GLI3	ENST00000449038.1|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000376369.3|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000429000.2|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000196061.4|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
hg19_v2_chr7_-_97501469_97501482	0.127029	GLI3	ENST00000414884.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing) 	ENST00000442734.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr2_+_26915584_26915634	0.126935	GLI3	ENST00000302909.3|KCNK3|ENSG00000171303.5|potassium channel, subfamily K, member 3
hg19_v2_chr17_-_34808047_34808104	0.126732	GLI3	ENST00000592614.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000591542.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000400684.4|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000330458.7|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000341264.6|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000592987.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G
hg19_v2_chr1_+_209941827_209941837	0.126315	GLI3	ENST00000367023.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr15_-_90456156_90456198	0.12619	GLI3	ENST00000357484.5|C15orf38|ENSG00000242498.3|chromosome 15 open reading frame 38
hg19_v2_chr20_-_62199427_62199427	0.1259	GLI3	ENST00000427522.2|HELZ2|ENSG00000130589.12|helicase with zinc finger 2, transcriptional coactivator
hg19_v2_chr19_+_45417921_45417970	0.125465	GLI3	ENST00000252491.4|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000592885.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000589781.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr17_+_7788104_7788138	0.124945	GLI3	ENST00000380358.4|CHD3|ENSG00000170004.12|chromodomain helicase DNA binding protein 3
hg19_v2_chr6_-_25832254_25832287	0.124735	GLI3	ENST00000476801.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000244527.4|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000427328.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr1_-_156542328_156542364	0.124274	GLI3	ENST00000361170.2|IQGAP3|ENSG00000183856.6|IQ motif containing GTPase activating protein 3
hg19_v2_chr17_-_39928501_39928521	0.123994	GLI3	ENST00000420370.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr2_+_25015968_25016029	0.123885	GLI3	ENST00000380834.2|CENPO|ENSG00000138092.6|centromere protein O 	ENST00000473706.1|CENPO|ENSG00000138092.6|centromere protein O
hg19_v2_chr2_-_27333965_27333971	0.123767	GLI3	ENST00000452318.2|CGREF1|ENSG00000138028.10|cell growth regulator with EF-hand domain 1
hg19_v2_chr12_-_53715328_53715415	0.123762	GLI3	ENST00000547757.1|AAAS|ENSG00000094914.8|achalasia, adrenocortical insufficiency, alacrimia 	ENST00000394384.3|AAAS|ENSG00000094914.8|achalasia, adrenocortical insufficiency, alacrimia 	ENST00000209873.4|AAAS|ENSG00000094914.8|achalasia, adrenocortical insufficiency, alacrimia
hg19_v2_chrX_-_134156502_134156577	0.123572	GLI3	ENST00000391440.1|FAM127C|ENSG00000212747.3|family with sequence similarity 127, member C
hg19_v2_chrX_+_51636629_51636759	0.12332	GLI3	ENST00000375722.1|MAGED1|ENSG00000179222.13|melanoma antigen family D, 1 	ENST00000326587.7|MAGED1|ENSG00000179222.13|melanoma antigen family D, 1 	ENST00000375695.2|MAGED1|ENSG00000179222.13|melanoma antigen family D, 1
hg19_v2_chr1_-_160990886_160990921	0.123091	GLI3	ENST00000537746.1|F11R|ENSG00000158769.13|F11 receptor
hg19_v2_chr3_-_125775629_125775681	0.123053	GLI3	ENST00000383598.2|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr1_-_151342180_151342317	0.122949	GLI3	ENST00000424475.1|SELENBP1|ENSG00000143416.16|selenium binding protein 1
hg19_v2_chr17_-_62503015_62503047	0.122876	GLI3	ENST00000581806.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr19_-_10213335_10213472	0.122721	GLI3	ENST00000592641.1|ANGPTL6|ENSG00000130812.6|angiopoietin-like 6 	ENST00000253109.4|ANGPTL6|ENSG00000130812.6|angiopoietin-like 6
hg19_v2_chr22_+_39436862_39436924	0.122177	GLI3	ENST00000381565.2|APOBEC3F|ENSG00000128394.12|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 	ENST00000452957.2|APOBEC3G|ENSG00000239713.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
hg19_v2_chr1_+_1550795_1550927	0.121858	GLI3	ENST00000520777.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000357210.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000360522.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000378710.3|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000355826.5|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000518681.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000505820.2|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chrX_+_70364667_70364721	0.121558	GLI3	ENST00000536169.1|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000395855.2|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000374051.3|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000358741.3|NLGN3|ENSG00000196338.8|neuroligin 3
hg19_v2_chr15_-_78933567_78933604	0.121557	GLI3	ENST00000261751.3|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal) 	ENST00000412074.2|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal)
hg19_v2_chr7_-_100860851_100860954	0.121035	GLI3	ENST00000223127.3|PLOD3|ENSG00000106397.7|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
hg19_v2_chr19_-_11689752_11689801	0.120684	GLI3	ENST00000592659.1|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000592828.1|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000218758.5|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000412435.2|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant
hg19_v2_chr21_+_47540424_47540474	0.120667	GLI3	ENST00000413758.1|COL6A2|ENSG00000142173.10|collagen, type VI, alpha 2
hg19_v2_chr3_-_150421676_150421723	0.120004	GLI3	ENST00000474463.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr3_+_127872265_127872344	0.11982	GLI3	ENST00000254730.6|EEFSEC|ENSG00000132394.6|eukaryotic elongation factor, selenocysteine-tRNA-specific 	ENST00000483457.1|EEFSEC|ENSG00000132394.6|eukaryotic elongation factor, selenocysteine-tRNA-specific
hg19_v2_chrX_-_7895755_7895780	0.11938	GLI3	ENST00000444736.1|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4 	ENST00000537427.1|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4 	ENST00000442940.1|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4
hg19_v2_chr12_-_118498911_118498924	0.119295	GLI3	ENST00000544233.1|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr16_+_30194293_30194308	0.119096	GLI3	ENST00000561815.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr19_-_21512115_21512138	0.119093	GLI3	ENST00000601295.1|ZNF708|ENSG00000182141.5|zinc finger protein 708
hg19_v2_chr11_+_64052692_64052747	0.117602	GLI3	ENST00000377702.4|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr13_-_114103443_114103592	0.117595	GLI3	ENST00000356501.4|ADPRHL1|ENSG00000153531.8|ADP-ribosylhydrolase like 1 	ENST00000413169.2|ADPRHL1|ENSG00000153531.8|ADP-ribosylhydrolase like 1
hg19_v2_chr2_-_233877912_233877982	0.117057	GLI3	ENST00000264051.3|NGEF|ENSG00000066248.10|neuronal guanine nucleotide exchange factor
hg19_v2_chr17_-_30186328_30186356	0.11685	GLI3	ENST00000302362.6|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr2_+_264913_264964	0.115708	GLI3	ENST00000439645.2|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000405233.1|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble
hg19_v2_chr7_+_100860949_100860983	0.115468	GLI3	ENST00000305105.2|ZNHIT1|ENSG00000106400.7|zinc finger, HIT-type containing 1
hg19_v2_chr22_-_30953587_30953717	0.115249	GLI3	ENST00000453479.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr6_-_159420780_159420872	0.115248	GLI3	ENST00000449822.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chr12_-_54978086_54978100	0.114925	GLI3	ENST00000553113.1|PPP1R1A|ENSG00000135447.12|protein phosphatase 1, regulatory (inhibitor) subunit 1A
hg19_v2_chr6_-_116601044_116601106	0.114145	GLI3	ENST00000368608.3|TSPYL1|ENSG00000189241.6|TSPY-like 1
hg19_v2_chr11_+_118478313_118478358	0.113942	GLI3	ENST00000356063.5|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr17_+_4835580_4835593	0.113637	GLI3	ENST00000329125.5|GP1BA|ENSG00000185245.6|glycoprotein Ib (platelet), alpha polypeptide
hg19_v2_chr3_-_49726104_49726106	0.113431	GLI3	ENST00000383728.3|MST1|ENSG00000173531.11|macrophage stimulating 1 (hepatocyte growth factor-like) 	ENST00000545762.1|MST1|ENSG00000173531.11|macrophage stimulating 1 (hepatocyte growth factor-like)
hg19_v2_chr16_-_4465886_4465906	0.113096	GLI3	ENST00000539968.1|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr18_+_77623668_77623668	0.113083	GLI3	ENST00000316249.3|KCNG2|ENSG00000178342.4|potassium voltage-gated channel, subfamily G, member 2
hg19_v2_chr1_-_19615744_19615744	0.112906	GLI3	ENST00000361640.4|AKR7A3|ENSG00000162482.4|aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase)
hg19_v2_chr22_-_50312052_50312121	0.112696	GLI3	ENST00000330817.6|ALG12|ENSG00000182858.9|ALG12, alpha-1,6-mannosyltransferase
hg19_v2_chr15_-_76005170_76005197	0.112567	GLI3	ENST00000308508.5|CSPG4|ENSG00000173546.7|chondroitin sulfate proteoglycan 4
hg19_v2_chr14_-_50778872_50778928	0.112564	GLI3	ENST00000555610.1|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase 	ENST00000261699.4|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase
hg19_v2_chr17_+_6899366_6899384	0.112561	GLI3	ENST00000251535.6|ALOX12|ENSG00000108839.7|arachidonate 12-lipoxygenase
hg19_v2_chr19_+_29493486_29493499	0.11241	GLI3	ENST00000589821.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2
hg19_v2_chr9_+_134378289_134378409	0.112167	GLI3	ENST00000423007.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000404875.2|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000441334.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000341012.7|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000372228.3|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000402686.3|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000419118.2|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000541219.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000354713.4|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000418774.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000415075.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000448212.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000430619.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1
hg19_v2_chr17_-_1420182_1420279	0.111779	GLI3	ENST00000421807.2|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr17_+_30594823_30594823	0.11167	GLI3	ENST00000536287.1|RHBDL3|ENSG00000141314.8|rhomboid, veinlet-like 3 (Drosophila)
hg19_v2_chr3_-_52273098_52273276	0.111577	GLI3	ENST00000499914.2|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2 	ENST00000597542.1|TLR9|ENSG00000239732.2|toll-like receptor 9 	ENST00000305533.5|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2
hg19_v2_chr17_-_79358929_79358954	0.111446	GLI3	ENST00000570301.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr1_-_155225178_155225225	0.11144	GLI3	ENST00000361361.2|FAM189B|ENSG00000160767.16|family with sequence similarity 189, member B
hg19_v2_chr14_-_105708942_105709071	0.111412	GLI3	ENST00000549655.1|BRF1|ENSG00000185024.11|BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
hg19_v2_chr11_-_116708302_116708347	0.111321	GLI3	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr16_-_755819_755860	0.111238	GLI3	ENST00000397621.1|FBXL16|ENSG00000127585.7|F-box and leucine-rich repeat protein 16
hg19_v2_chr2_+_10560147_10560201	0.11038	GLI3	ENST00000422133.1|HPCAL1|ENSG00000115756.8|hippocalcin-like 1
hg19_v2_chr3_-_169482840_169482855	0.110234	GLI3	ENST00000602385.1|TERC|ENSG00000270141.2|telomerase RNA component
hg19_v2_chr11_-_134094420_134094447	0.109965	GLI3	ENST00000526422.1|NCAPD3|ENSG00000151503.8|non-SMC condensin II complex, subunit D3 	ENST00000525485.1|NCAPD3|ENSG00000151503.8|non-SMC condensin II complex, subunit D3
hg19_v2_chrX_+_52511761_52511769	0.109853	GLI3	ENST00000399795.3|XAGE1C|ENSG00000183461.12|X antigen family, member 1C 	ENST00000375589.1|XAGE1C|ENSG00000183461.12|X antigen family, member 1C
hg19_v2_chr17_-_62502639_62502849	0.109828	GLI3	ENST00000225792.5|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000581697.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000584279.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000577922.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr1_-_36020531_36020588	0.109769	GLI3	ENST00000440579.1|KIAA0319L|ENSG00000142687.13|KIAA0319-like 	ENST00000494948.1|KIAA0319L|ENSG00000142687.13|KIAA0319-like
hg19_v2_chr19_+_10216899_10217095	0.109483	GLI3	ENST00000428358.1|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000253107.7|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000556468.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000393796.4|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000393793.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr4_-_105416039_105416065	0.109236	GLI3	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr7_+_64363625_64363667	0.109125	GLI3	ENST00000476120.1|ZNF273|ENSG00000198039.7|zinc finger protein 273 	ENST00000319636.5|ZNF273|ENSG00000198039.7|zinc finger protein 273 	ENST00000545510.1|ZNF273|ENSG00000198039.7|zinc finger protein 273
hg19_v2_chr16_+_30212050_30212050	0.108473	GLI3	ENST00000563322.1|SULT1A3|ENSG00000261052.1|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3
hg19_v2_chr12_+_10365404_10365547	0.108393	GLI3	ENST00000266458.5|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000421801.2|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000544284.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545047.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000543602.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545887.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1
hg19_v2_chr1_+_44679370_44679513	0.108385	GLI3	ENST00000372290.4|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1
hg19_v2_chr11_-_117103208_117103288	0.108198	GLI3	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr17_+_50939459_50939481	0.107929	GLI3	ENST00000412360.1|AC102948.2|ENSG00000226364.1|Uncharacterized protein
hg19_v2_chr1_-_247242048_247242098	0.107586	GLI3	ENST00000366503.2|ZNF670|ENSG00000135747.7|zinc finger protein 670
hg19_v2_chr5_-_72861175_72861264	0.107418	GLI3	ENST00000504641.1|ANKRA2|ENSG00000164331.5|ankyrin repeat, family A (RFXANK-like), 2
hg19_v2_chr21_+_45725050_45725211	0.107267	GLI3	ENST00000403390.1|PFKL|ENSG00000141959.12|phosphofructokinase, liver
hg19_v2_chr7_+_47694842_47694842	0.107263	GLI3	ENST00000408988.2|C7orf65|ENSG00000221845.2|chromosome 7 open reading frame 65
hg19_v2_chr13_+_115047097_115047120	0.106861	GLI3	ENST00000351487.5|UPF3A|ENSG00000169062.10|UPF3 regulator of nonsense transcripts homolog A (yeast)
hg19_v2_chr17_-_37557846_37557920	0.106667	GLI3	ENST00000394294.3|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20 	ENST00000583610.1|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20 	ENST00000264658.6|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20
hg19_v2_chr6_-_33679452_33679528	0.106359	GLI3	ENST00000374231.4|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2 	ENST00000607484.1|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2 	ENST00000374214.3|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2
hg19_v2_chr11_-_75062829_75062951	0.106338	GLI3	ENST00000393505.4|ARRB1|ENSG00000137486.12|arrestin, beta 1
hg19_v2_chr16_+_29817399_29817427	0.105512	GLI3	ENST00000545521.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr2_+_178257372_178257523	0.105431	GLI3	ENST00000264167.4|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase 	ENST00000409888.1|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase
hg19_v2_chr2_-_24308051_24308085	0.104918	GLI3	ENST00000238721.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3 	ENST00000335934.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chrX_+_51927919_51927991	0.104823	GLI3	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr17_+_65040678_65040733	0.104716	GLI3	ENST00000226021.3|CACNG1|ENSG00000108878.3|calcium channel, voltage-dependent, gamma subunit 1
hg19_v2_chr11_-_72432950_72433073	0.10455	GLI3	ENST00000426523.1|ARAP1|ENSG00000186635.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 	ENST00000429686.1|ARAP1|ENSG00000186635.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
hg19_v2_chr8_+_145218673_145218673	0.104437	GLI3	ENST00000326134.5|MROH1|ENSG00000179832.13|maestro heat-like repeat family member 1
hg19_v2_chr19_+_33622996_33623026	0.104071	GLI3	ENST00000592765.1|WDR88|ENSG00000166359.6|WD repeat domain 88 	ENST00000361680.2|WDR88|ENSG00000166359.6|WD repeat domain 88 	ENST00000355868.3|WDR88|ENSG00000166359.6|WD repeat domain 88
hg19_v2_chr17_+_72744791_72744810	0.103552	GLI3	ENST00000583369.1|SLC9A3R1|ENSG00000109062.5|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 	ENST00000262613.5|SLC9A3R1|ENSG00000109062.5|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1
hg19_v2_chr19_+_58978463_58978476	0.103211	GLI3	ENST00000196482.3|ZNF324|ENSG00000083812.7|zinc finger protein 324
hg19_v2_chrX_-_47489244_47489364	0.103084	GLI3	ENST00000469388.1|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000396992.3|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000377005.2|CFP|ENSG00000126759.8|complement factor properdin
hg19_v2_chr15_-_102192567_102192597	0.103034	GLI3	ENST00000333202.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000428002.2|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000559107.1|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000347970.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3
hg19_v2_chr10_-_105212141_105212183	0.102213	GLI3	ENST00000369788.3|CALHM2|ENSG00000138172.6|calcium homeostasis modulator 2
hg19_v2_chr16_+_16043406_16043434	0.102122	GLI3	ENST00000399410.3|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000399408.2|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000346370.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000351154.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000345148.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000349029.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
hg19_v2_chr8_-_61880248_61880334	0.101786	GLI3	ENST00000525556.1|AC022182.3|ENSG00000254802.1|AC022182.3
hg19_v2_chr3_-_192635943_192635955	0.101483	GLI3	ENST00000392452.2|MB21D2|ENSG00000180611.6|Mab-21 domain containing 2
hg19_v2_chrX_-_19504642_19504642	0.101444	GLI3	ENST00000469203.2|MAP3K15|ENSG00000180815.10|mitogen-activated protein kinase kinase kinase 15
hg19_v2_chrX_+_134166333_134166371	0.101377	GLI3	ENST00000257013.7|FAM127A|ENSG00000134590.9|family with sequence similarity 127, member A
hg19_v2_chr12_-_13529642_13529664	0.101293	GLI3	ENST00000318426.2|C12orf36|ENSG00000180861.5|chromosome 12 open reading frame 36
hg19_v2_chr16_+_28857957_28857969	0.101293	GLI3	ENST00000567536.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr19_+_44100632_44100683	0.101162	GLI3	ENST00000533118.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr3_-_38178527_38178632	0.101156	GLI3	ENST00000544624.1|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1 	ENST00000444607.2|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1 	ENST00000450296.1|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1
hg19_v2_chr8_+_1922024_1922069	0.101095	GLI3	ENST00000320248.3|KBTBD11|ENSG00000176595.3|kelch repeat and BTB (POZ) domain containing 11
hg19_v2_chr17_-_73840614_73840645	0.100971	GLI3	ENST00000586108.1|UNC13D|ENSG00000092929.7|unc-13 homolog D (C. elegans)
hg19_v2_chr16_-_2318373_2318414	0.100924	GLI3	ENST00000566458.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000320225.5|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr3_-_8686479_8686486	0.10092	GLI3	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chr17_-_42200996_42201070	0.100856	GLI3	ENST00000587135.1|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000225983.6|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000393622.2|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000588703.1|HDAC5|ENSG00000108840.11|histone deacetylase 5
hg19_v2_chr20_+_44637526_44637554	0.100689	GLI3	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
hg19_v2_chr6_+_116601330_116601381	0.100479	GLI3	ENST00000449314.1|RP1-93H18.1|ENSG00000240050.1|RP1-93H18.1	ENST00000453463.1|RP1-93H18.1|ENSG00000240050.1|RP1-93H18.1
hg19_v2_chr19_-_49015050_49015111	0.100478	GLI3	ENST00000600059.1|LMTK3|ENSG00000142235.4|lemur tyrosine kinase 3
hg19_v2_chr17_+_76374714_76374759	0.0999268	GLI3	ENST00000262764.6|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000589689.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000329897.7|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000592043.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000587356.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1
hg19_v2_chr9_+_124413873_124413969	0.099565	GLI3	ENST00000408936.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr22_+_38201114_38201214	0.0994109	GLI3	ENST00000340857.2|H1F0|ENSG00000189060.4|H1 histone family, member 0
hg19_v2_chr17_-_1420006_1420036	0.0993982	GLI3	ENST00000320345.6|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000406424.4|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr15_-_43212996_43213013	0.0991012	GLI3	ENST00000567840.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chr4_-_48908822_48908845	0.0989702	GLI3	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr4_+_3344141_3344178	0.0984467	GLI3	ENST00000306648.7|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr1_-_110155671_110155685	0.0983882	GLI3	ENST00000351050.3|GNAT2|ENSG00000134183.7|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
hg19_v2_chr3_+_51977294_51977327	0.0980025	GLI3	ENST00000498510.1|PARP3|ENSG00000041880.10|poly (ADP-ribose) polymerase family, member 3
hg19_v2_chr6_-_134373732_134373795	0.0979882	GLI3	ENST00000275230.5|SLC2A12|ENSG00000146411.5|solute carrier family 2 (facilitated glucose transporter), member 12
hg19_v2_chr16_-_4466622_4466665	0.0978748	GLI3	ENST00000570645.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000574025.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000572898.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000537233.2|CORO7|ENSG00000262246.1|coronin 7 	ENST00000571059.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000251166.4|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr3_+_49591881_49591940	0.0974592	GLI3	ENST00000296452.4|BSN|ENSG00000164061.4|bassoon presynaptic cytomatrix protein
hg19_v2_chr1_-_206671061_206671061	0.0973229	GLI3	ENST00000367119.1|C1orf147|ENSG00000162888.4|chromosome 1 open reading frame 147
hg19_v2_chr5_+_148960931_148961073	0.0971914	GLI3	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr16_-_21452040_21452040	0.0968576	GLI3	ENST00000521589.1|NPIPB3|ENSG00000169246.12|nuclear pore complex interacting protein family, member B3
hg19_v2_chr11_-_61658853_61658932	0.0965582	GLI3	ENST00000525588.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3 	ENST00000540820.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr22_-_18507279_18507364	0.0963153	GLI3	ENST00000441493.2|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000444520.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000207726.7|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000429452.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3
hg19_v2_chr12_-_118490403_118490414	0.0958858	GLI3	ENST00000535496.1|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr7_+_69064300_69064342	0.0957624	GLI3	ENST00000342771.4|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr3_+_159481988_159482005	0.0957179	GLI3	ENST00000472451.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr11_+_64001962_64002033	0.0956279	GLI3	ENST00000309422.2|VEGFB|ENSG00000173511.5|vascular endothelial growth factor B
hg19_v2_chrX_-_52260355_52260363	0.0956065	GLI3	ENST00000375602.1|XAGE1A|ENSG00000204379.6|X antigen family, member 1A 	ENST00000399800.3|XAGE1A|ENSG00000204379.6|X antigen family, member 1A
hg19_v2_chr9_+_131102925_131103015	0.0955551	GLI3	ENST00000372870.1|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4 	ENST00000300456.4|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4
hg19_v2_chr17_-_19651668_19651746	0.0954921	GLI3	ENST00000494157.2|ALDH3A1|ENSG00000108602.13|aldehyde dehydrogenase 3 family, member A1 	ENST00000225740.6|ALDH3A1|ENSG00000108602.13|aldehyde dehydrogenase 3 family, member A1
hg19_v2_chr11_+_68451943_68451986	0.095254	GLI3	ENST00000265643.3|GAL|ENSG00000069482.6|galanin/GMAP prepropeptide
hg19_v2_chr22_-_38539487_38539506	0.0952037	GLI3	ENST00000498338.1|PLA2G6|ENSG00000184381.14|phospholipase A2, group VI (cytosolic, calcium-independent)
hg19_v2_chr3_+_186648507_186648568	0.0948091	GLI3	ENST00000458216.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr3_-_38992052_38992052	0.0945684	GLI3	ENST00000302328.3|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit 	ENST00000450244.1|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit 	ENST00000444237.2|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit
hg19_v2_chr19_+_38810447_38810529	0.0945428	GLI3	ENST00000263372.3|KCNK6|ENSG00000099337.3|potassium channel, subfamily K, member 6
hg19_v2_chr17_-_54991395_54991453	0.0943893	GLI3	ENST00000316881.4|TRIM25|ENSG00000121060.10|tripartite motif containing 25
hg19_v2_chr3_+_11314099_11314122	0.0941892	GLI3	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr19_-_59023348_59023432	0.0938599	GLI3	ENST00000601355.1|SLC27A5|ENSG00000083807.5|solute carrier family 27 (fatty acid transporter), member 5 	ENST00000263093.2|SLC27A5|ENSG00000083807.5|solute carrier family 27 (fatty acid transporter), member 5
hg19_v2_chr9_+_5231413_5231425	0.0937274	GLI3	ENST00000239316.4|INSL4|ENSG00000120211.4|insulin-like 4 (placenta)
hg19_v2_chr18_+_3448455_3448497	0.0937005	GLI3	ENST00000549780.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr11_+_66247478_66247503	0.0935934	GLI3	ENST00000531863.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3 	ENST00000532677.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3
hg19_v2_chr6_-_30181133_30181150	0.0932713	GLI3	ENST00000454678.2|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000434785.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26
hg19_v2_chr17_-_1419914_1419939	0.0932433	GLI3	ENST00000397335.3|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000574561.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr1_+_22138758_22138856	0.0927391	GLI3	ENST00000344642.2|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2 	ENST00000543870.1|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2
hg19_v2_chr2_+_235903480_235903488	0.0924732	GLI3	ENST00000454947.1|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chr1_-_1051736_1051754	0.092425	GLI3	ENST00000448924.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000294576.5|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000437760.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000462097.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000475119.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr6_+_33172407_33172419	0.0923308	GLI3	ENST00000374662.3|HSD17B8|ENSG00000204228.3|hydroxysteroid (17-beta) dehydrogenase 8
hg19_v2_chr7_+_44240520_44240652	0.0923249	GLI3	ENST00000496112.1|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae) 	ENST00000223369.2|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae)
hg19_v2_chr11_+_76777979_76778027	0.0920753	GLI3	ENST00000531028.1|CAPN5|ENSG00000149260.10|calpain 5 	ENST00000278559.3|CAPN5|ENSG00000149260.10|calpain 5 	ENST00000527066.1|CAPN5|ENSG00000149260.10|calpain 5 	ENST00000529629.1|CAPN5|ENSG00000149260.10|calpain 5
hg19_v2_chr1_-_11866034_11866115	0.0919831	GLI3	ENST00000376590.3|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr12_-_109531264_109531300	0.0918954	GLI3	ENST00000429722.2|ALKBH2|ENSG00000189046.6|alkB, alkylation repair homolog 2 (E. coli) 	ENST00000536242.1|ALKBH2|ENSG00000189046.6|alkB, alkylation repair homolog 2 (E. coli) 	ENST00000343075.3|ALKBH2|ENSG00000189046.6|alkB, alkylation repair homolog 2 (E. coli) 	ENST00000536358.1|ALKBH2|ENSG00000189046.6|alkB, alkylation repair homolog 2 (E. coli)
hg19_v2_chr11_-_73309228_73309257	0.0918891	GLI3	ENST00000356467.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A 	ENST00000064778.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A
hg19_v2_chr19_-_54619006_54619055	0.0918794	GLI3	ENST00000391759.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr3_+_42190714_42190787	0.0917077	GLI3	ENST00000449246.1|TRAK1|ENSG00000182606.10|trafficking protein, kinesin binding 1
hg19_v2_chr1_-_209792111_209792143	0.0916914	GLI3	ENST00000455193.1|LAMB3|ENSG00000196878.8|laminin, beta 3
hg19_v2_chr2_+_171673072_171673225	0.0913178	GLI3	ENST00000358196.3|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa) 	ENST00000375272.1|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa)
hg19_v2_chr8_-_29120580_29120596	0.0910087	GLI3	ENST00000524189.1|KIF13B|ENSG00000197892.8|kinesin family member 13B
hg19_v2_chr1_-_176176629_176176659	0.090811	GLI3	ENST00000367669.3|RFWD2|ENSG00000143207.15|ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
hg19_v2_chr3_-_15469006_15469043	0.0905556	GLI3	ENST00000443029.1|METTL6|ENSG00000206562.7|methyltransferase like 6 	ENST00000383790.3|METTL6|ENSG00000206562.7|methyltransferase like 6 	ENST00000383789.5|METTL6|ENSG00000206562.7|methyltransferase like 6
hg19_v2_chr7_+_44084262_44084332	0.0904696	GLI3	ENST00000456905.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000440166.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000452943.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000468694.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000494774.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000490734.2|DBNL|ENSG00000136279.14|drebrin-like
hg19_v2_chr17_-_18907463_18907551	0.0902831	GLI3	ENST00000585154.2|FAM83G|ENSG00000188522.10|family with sequence similarity 83, member G 	ENST00000345041.4|FAM83G|ENSG00000188522.10|family with sequence similarity 83, member G
hg19_v2_chr2_+_232573222_232573249	0.0900687	GLI3	ENST00000341369.7|PTMA|ENSG00000187514.10|prothymosin, alpha 	ENST00000409683.1|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr19_+_17337473_17337549	0.0899912	GLI3	ENST00000598068.1|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1
hg19_v2_chr22_+_20008595_20008644	0.0898067	GLI3	ENST00000398042.2|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila) 	ENST00000450664.1|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila) 	ENST00000327374.4|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila) 	ENST00000432883.1|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila)
hg19_v2_chr9_+_127213423_127213423	0.0897916	GLI3	ENST00000334810.1|GPR144|ENSG00000180264.6|G protein-coupled receptor 144
hg19_v2_chr17_+_4736627_4736720	0.0897272	GLI3	ENST00000355280.6|MINK1|ENSG00000141503.11|misshapen-like kinase 1 	ENST00000347992.7|MINK1|ENSG00000141503.11|misshapen-like kinase 1
hg19_v2_chr17_-_58096336_58096413	0.0893893	GLI3	ENST00000587125.1|TBC1D3P1-DHX40P1|ENSG00000267104.1|TBC1D3P1-DHX40P1 readthrough transcribed pseudogene 	ENST00000407042.3|TBC1D3P1-DHX40P1|ENSG00000267104.1|TBC1D3P1-DHX40P1 readthrough transcribed pseudogene
hg19_v2_chr11_+_66276550_66276550	0.0893644	GLI3	ENST00000419755.3|CTD-3074O7.11|ENSG00000256349.1|Bardet-Biedl syndrome 1 protein
hg19_v2_chr15_-_44092295_44092423	0.0890573	GLI3	ENST00000249714.3|SERINC4|ENSG00000184716.9|serine incorporator 4 	ENST00000299969.6|SERINC4|ENSG00000184716.9|serine incorporator 4 	ENST00000319327.6|SERINC4|ENSG00000184716.9|serine incorporator 4
hg19_v2_chr22_-_20004330_20004364	0.0880101	GLI3	ENST00000263207.3|ARVCF|ENSG00000099889.9|armadillo repeat gene deleted in velocardiofacial syndrome
hg19_v2_chr1_+_27114589_27114712	0.0878857	GLI3	ENST00000431541.1|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V 	ENST00000449950.2|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V 	ENST00000374145.1|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V
hg19_v2_chr7_+_37960163_37960291	0.0872078	GLI3	ENST00000199448.4|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000559325.1|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000423717.1|EPDR1|ENSG00000086289.7|ependymin related 1
hg19_v2_chr2_+_128458514_128458597	0.0871452	GLI3	ENST00000310981.4|SFT2D3|ENSG00000173349.4|SFT2 domain containing 3
hg19_v2_chr2_-_85637459_85637495	0.0871166	GLI3	ENST00000409921.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr20_+_36149602_36149665	0.0870537	GLI3	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr2_+_119981384_119981446	0.08696	GLI3	ENST00000393108.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000354888.5|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000450943.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393110.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393106.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000409811.1|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393107.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase
hg19_v2_chr1_+_36789335_36789335	0.0869165	GLI3	ENST00000373137.2|RP11-268J15.5|ENSG00000116883.8|RP11-268J15.5
hg19_v2_chrX_+_149531524_149531572	0.0861213	GLI3	ENST00000370401.2|MAMLD1|ENSG00000013619.9|mastermind-like domain containing 1
hg19_v2_chr12_-_57940904_57941002	0.0859211	GLI3	ENST00000550954.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000434715.3|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000546670.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000543672.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50)
hg19_v2_chr17_+_73750699_73750793	0.0855971	GLI3	ENST00000584939.1|ITGB4|ENSG00000132470.9|integrin, beta 4
hg19_v2_chr16_+_1730338_1730369	0.0853072	GLI3	ENST00000566691.1|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like 	ENST00000382710.4|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like
hg19_v2_chr15_+_75080883_75080890	0.0852903	GLI3	ENST00000567571.1|CSK|ENSG00000103653.12|c-src tyrosine kinase
hg19_v2_chr2_-_224702257_224702266	0.0852431	GLI3	ENST00000409375.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr8_-_82024290_82024310	0.085201	GLI3	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr17_+_80818231_80818270	0.0851041	GLI3	ENST00000576996.1|TBCD|ENSG00000141556.16|tubulin folding cofactor D
hg19_v2_chr2_+_95537248_95537259	0.0849109	GLI3	ENST00000427593.2|TEKT4|ENSG00000163060.6|tektin 4
hg19_v2_chr15_-_65809625_65809676	0.0847851	GLI3	ENST00000560436.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr7_-_33148975_33149050	0.0844135	GLI3	ENST00000297157.3|RP9|ENSG00000164610.4|retinitis pigmentosa 9 (autosomal dominant)
hg19_v2_chr9_+_90112117_90112164	0.0843708	GLI3	ENST00000358077.5|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr15_+_42566384_42566475	0.0841774	GLI3	ENST00000440615.2|GANC|ENSG00000214013.5|glucosidase, alpha; neutral C 	ENST00000318010.8|GANC|ENSG00000214013.5|glucosidase, alpha; neutral C
hg19_v2_chr17_+_75315534_75315612	0.0841537	GLI3	ENST00000590294.1|SEPT9|ENSG00000184640.13|septin 9 	ENST00000329047.8|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr3_-_150421752_150421771	0.0839612	GLI3	ENST00000498386.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr4_+_3388057_3388075	0.083923	GLI3	ENST00000538395.1|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr1_+_15764931_15764945	0.0839175	GLI3	ENST00000375949.4|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin) 	ENST00000375943.2|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin)
hg19_v2_chr22_+_25615489_25615544	0.0833102	GLI3	ENST00000398215.2|CRYBB2|ENSG00000244752.2|crystallin, beta B2
hg19_v2_chr17_-_79481666_79481785	0.0833058	GLI3	ENST00000575659.1|ACTG1|ENSG00000184009.5|actin, gamma 1
hg19_v2_chr1_+_27114418_27114518	0.0831168	GLI3	ENST00000078527.4|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V
hg19_v2_chr11_-_117186946_117186981	0.0828679	GLI3	ENST00000313005.6|BACE1|ENSG00000186318.12|beta-site APP-cleaving enzyme 1 	ENST00000528053.1|BACE1|ENSG00000186318.12|beta-site APP-cleaving enzyme 1
hg19_v2_chr1_+_170904612_170904677	0.0826252	GLI3	ENST00000367759.4|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9 	ENST00000367758.3|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9
hg19_v2_chr19_-_2096478_2096672	0.0810191	GLI3	ENST00000591236.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A 	ENST00000589902.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr15_+_49462434_49462488	0.0806586	GLI3	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chrX_-_119077695_119077757	0.0804453	GLI3	ENST00000371410.3|NKAP|ENSG00000101882.5|NFKB activating protein
hg19_v2_chr6_+_26204825_26204858	0.0803993	GLI3	ENST00000360441.4|HIST1H4E|ENSG00000198518.5|histone cluster 1, H4e
hg19_v2_chr7_-_150974494_150974538	0.0802724	GLI3	ENST00000392811.2|SMARCD3|ENSG00000082014.12|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
hg19_v2_chr5_-_43412418_43412499	0.0795642	GLI3	ENST00000537013.1|CCL28|ENSG00000151882.7|chemokine (C-C motif) ligand 28 	ENST00000361115.4|CCL28|ENSG00000151882.7|chemokine (C-C motif) ligand 28
hg19_v2_chr15_-_65321943_65321984	0.0794708	GLI3	ENST00000220058.4|MTFMT|ENSG00000103707.5|mitochondrial methionyl-tRNA formyltransferase
hg19_v2_chrX_+_52511925_52511925	0.0794007	GLI3	ENST00000375588.1|XAGE1C|ENSG00000183461.12|X antigen family, member 1C
hg19_v2_chr9_+_35805527_35805527	0.0793007	GLI3	ENST00000421267.1|NPR2|ENSG00000159899.10|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)
hg19_v2_chr1_-_6052463_6052542	0.0791771	GLI3	ENST00000378156.4|NPHP4|ENSG00000131697.13|nephronophthisis 4
hg19_v2_chr4_-_76861392_76861418	0.0789552	GLI3	ENST00000505594.1|NAAA|ENSG00000138744.10|N-acylethanolamine acid amidase
hg19_v2_chr1_-_16678914_16678989	0.078918	GLI3	ENST00000375592.3|FBXO42|ENSG00000037637.6|F-box protein 42
hg19_v2_chr1_+_1551220_1551320	0.0784352	GLI3	ENST00000378712.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chr16_+_2014941_2014964	0.0782245	GLI3	ENST00000531523.1|SNHG9|ENSG00000255198.3|small nucleolar RNA host gene 9 (non-protein coding)
hg19_v2_chr4_+_79567362_79567380	0.0781796	GLI3	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr22_-_24093267_24093327	0.0779865	GLI3	ENST00000341976.3|ZNF70|ENSG00000187792.3|zinc finger protein 70
hg19_v2_chr8_+_67687773_67687805	0.0778782	GLI3	ENST00000518388.1|SGK3|ENSG00000104205.8|serum/glucocorticoid regulated kinase family, member 3
hg19_v2_chr14_+_101292445_101292485	0.0778234	GLI3	ENST00000429159.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000520714.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000522771.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000424076.3|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000423456.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000521404.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000556736.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000451743.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000398518.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000554639.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000452120.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000519709.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000412736.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr10_-_81965307_81965351	0.0773648	GLI3	ENST00000537102.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000372231.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000438331.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000422982.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000360615.4|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000265447.4|ANXA11|ENSG00000122359.13|annexin A11
hg19_v2_chr6_+_170151708_170151762	0.0772362	GLI3	ENST00000592367.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000590711.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000366772.2|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000592745.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000392095.4|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000366773.3|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000586341.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000418781.3|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000588437.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation
hg19_v2_chr18_+_59992527_59992555	0.0771532	GLI3	ENST00000586569.1|TNFRSF11A|ENSG00000141655.11|tumor necrosis factor receptor superfamily, member 11a, NFKB activator
hg19_v2_chr9_-_34620440_34620515	0.0767059	GLI3	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr17_-_62502399_62502411	0.0765463	GLI3	ENST00000450599.2|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000585060.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr5_-_850676_850720	0.0765353	GLI3	ENST00000424784.2|ZDHHC11|ENSG00000188818.8|zinc finger, DHHC-type containing 11
hg19_v2_chr22_-_21482352_21482352	0.0761978	GLI3	ENST00000329949.3|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr1_-_47082495_47082563	0.0756079	GLI3	ENST00000545730.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000531769.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000319928.3|MOB3C|ENSG00000142961.10|MOB kinase activator 3C
hg19_v2_chr9_+_130860583_130860742	0.0751288	GLI3	ENST00000373064.5|SLC25A25|ENSG00000148339.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25
hg19_v2_chr2_+_232573208_232573219	0.0750069	GLI3	ENST00000409115.3|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr6_-_109777128_109777203	0.0749272	GLI3	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr5_+_176513868_176513893	0.0746939	GLI3	ENST00000292408.4|FGFR4|ENSG00000160867.10|fibroblast growth factor receptor 4
hg19_v2_chr1_-_46664074_46664126	0.0744845	GLI3	ENST00000371986.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 	ENST00000371984.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
hg19_v2_chr5_+_156569944_156570031	0.0743908	GLI3	ENST00000521769.1|ITK|ENSG00000113263.8|IL2-inducible T-cell kinase
hg19_v2_chr20_-_62587735_62587777	0.0742278	GLI3	ENST00000354216.6|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000369892.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000358711.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1
hg19_v2_chr8_+_145133493_145133551	0.0724864	GLI3	ENST00000316052.5|EXOSC4|ENSG00000178896.6|exosome component 4 	ENST00000525936.1|EXOSC4|ENSG00000178896.6|exosome component 4
hg19_v2_chr2_-_224702270_224702326	0.0722877	GLI3	ENST00000396654.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000396653.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000423110.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000443700.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr20_+_3776371_3776506	0.0722579	GLI3	ENST00000245960.5|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr2_+_70314579_70314590	0.0719404	GLI3	ENST00000303577.5|PCBP1|ENSG00000169564.5|poly(rC) binding protein 1
hg19_v2_chr15_-_65067773_65067796	0.0715693	GLI3	ENST00000300069.4|RBPMS2|ENSG00000166831.4|RNA binding protein with multiple splicing 2
hg19_v2_chr2_+_65215604_65215625	0.0715684	GLI3	ENST00000531327.1|SLC1A4|ENSG00000115902.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
hg19_v2_chr9_-_101017862_101017897	0.0714898	GLI3	ENST00000375064.1|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2 	ENST00000342112.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr17_-_1029866_1029912	0.0712281	GLI3	ENST00000570525.1|ABR|ENSG00000159842.10|active BCR-related
hg19_v2_chr1_-_1051455_1051495	0.071127	GLI3	ENST00000379339.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000480643.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000434641.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000421241.2|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr19_-_46105411_46105481	0.0707439	GLI3	ENST00000323040.4|GPR4|ENSG00000177464.4|G protein-coupled receptor 4 	ENST00000544371.1|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr21_-_33984888_33984903	0.0706881	GLI3	ENST00000382549.4|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59 	ENST00000540881.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr10_-_90712520_90712536	0.0705737	GLI3	ENST00000224784.6|ACTA2|ENSG00000107796.8|actin, alpha 2, smooth muscle, aorta
hg19_v2_chr22_+_46663861_46663886	0.0702862	GLI3	ENST00000381031.3|TTC38|ENSG00000075234.12|tetratricopeptide repeat domain 38 	ENST00000445282.2|TTC38|ENSG00000075234.12|tetratricopeptide repeat domain 38
hg19_v2_chr11_+_66025091_66025155	0.069823	GLI3	ENST00000526758.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000440228.2|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr3_+_9850199_9850239	0.0696013	GLI3	ENST00000452597.1|TTLL3|ENSG00000214021.11|tubulin tyrosine ligase-like family, member 3
hg19_v2_chr16_-_17564738_17564834	0.0694519	GLI3	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr7_+_99971068_99971128	0.0693645	GLI3	ENST00000198536.2|PILRA|ENSG00000085514.11|paired immunoglobin-like type 2 receptor alpha 	ENST00000453419.1|PILRA|ENSG00000085514.11|paired immunoglobin-like type 2 receptor alpha
hg19_v2_chr10_+_134145614_134145724	0.0685964	GLI3	ENST00000368615.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000392638.2|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000344079.5|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000356571.4|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000368614.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27
hg19_v2_chr4_+_187112674_187112698	0.0681479	GLI3	ENST00000378802.4|CYP4V2|ENSG00000145476.11|cytochrome P450, family 4, subfamily V, polypeptide 2
hg19_v2_chr3_-_182817367_182817378	0.0680528	GLI3	ENST00000265594.4|MCCC1|ENSG00000078070.7|methylcrotonoyl-CoA carboxylase 1 (alpha)
hg19_v2_chr8_-_27462822_27462856	0.0679042	GLI3	ENST00000522098.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr18_+_3451646_3451722	0.0678207	GLI3	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr20_-_44420507_44420547	0.0674275	GLI3	ENST00000243938.4|WFDC3|ENSG00000124116.14|WAP four-disulfide core domain 3
hg19_v2_chr22_-_50708781_50708852	0.0670964	GLI3	ENST00000449719.2|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11 	ENST00000330651.6|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11
hg19_v2_chr7_+_45928079_45928096	0.0663858	GLI3	ENST00000468955.1|IGFBP1|ENSG00000146678.5|insulin-like growth factor binding protein 1
hg19_v2_chrX_+_55026763_55026831	0.0663833	GLI3	ENST00000374987.3|APEX2|ENSG00000169188.4|APEX nuclease (apurinic/apyrimidinic endonuclease) 2
hg19_v2_chr1_-_31661000_31661000	0.0662825	GLI3	ENST00000263693.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000398657.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000526106.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr1_-_41487383_41487402	0.0659122	GLI3	ENST00000302946.8|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000372613.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000439569.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000397197.2|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr5_+_113769205_113769227	0.0658496	GLI3	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr19_+_44100727_44100804	0.0658271	GLI3	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chr6_-_159421198_159421254	0.0657696	GLI3	ENST00000252655.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000297262.3|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000367069.2|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chr2_+_20068628_20068661	0.065396	GLI3	ENST00000449086.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000456119.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000433669.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954
hg19_v2_chr8_-_36636676_36636688	0.0651638	GLI3	ENST00000524132.1|RP11-962G15.1|ENSG00000253363.1|RP11-962G15.1	ENST00000519451.1|RP11-962G15.1|ENSG00000253363.1|RP11-962G15.1
hg19_v2_chr13_-_46756351_46756459	0.0651028	GLI3	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr9_-_139345270_139345270	0.0648613	GLI3	ENST00000398335.1|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae)
hg19_v2_chr12_-_118541743_118541777	0.0648539	GLI3	ENST00000359236.5|VSIG10|ENSG00000176834.9|V-set and immunoglobulin domain containing 10
hg19_v2_chr19_-_344786_344826	0.0646357	GLI3	ENST00000264819.4|MIER2|ENSG00000105556.6|mesoderm induction early response 1, family member 2
hg19_v2_chr7_-_96339167_96339203	0.0645558	GLI3	ENST00000444799.1|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1 	ENST00000417009.1|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1 	ENST00000248566.2|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1
hg19_v2_chr2_+_232826211_232826293	0.0645139	GLI3	ENST00000325385.7|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2 	ENST00000360410.4|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2
hg19_v2_chr20_-_50722183_50722217	0.0644083	GLI3	ENST00000371523.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr12_-_13248732_13248744	0.0642722	GLI3	ENST00000396302.3|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr10_-_79398127_79398156	0.0641888	GLI3	ENST00000372443.1|KCNMA1|ENSG00000156113.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
hg19_v2_chr5_+_6633534_6633581	0.0640677	GLI3	ENST00000537411.1|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 	ENST00000538824.1|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
hg19_v2_chr9_-_123676827_123676865	0.0640207	GLI3	ENST00000546084.1|TRAF1|ENSG00000056558.6|TNF receptor-associated factor 1
hg19_v2_chr12_-_48744554_48744733	0.0639535	GLI3	ENST00000544117.2|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000548932.1|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000549125.1|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000301042.3|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000547026.1|ZNF641|ENSG00000167528.8|zinc finger protein 641
hg19_v2_chr1_-_95285652_95285719	0.0636558	GLI3	ENST00000442418.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057
hg19_v2_chr2_-_85636928_85636955	0.0634033	GLI3	ENST00000449030.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr22_-_28197486_28197544	0.0633807	GLI3	ENST00000302326.4|MN1|ENSG00000169184.5|meningioma (disrupted in balanced translocation) 1
hg19_v2_chr2_+_47799601_47799601	0.0633582	GLI3	ENST00000601243.1|AC138655.1|ENSG00000269563.1|CDNA: FLJ23120 fis, clone LNG07989; HCG1987724; Uncharacterized protein
hg19_v2_chr12_-_122751002_122751068	0.0630766	GLI3	ENST00000267199.4|VPS33A|ENSG00000139719.5|vacuolar protein sorting 33 homolog A (S. cerevisiae)
hg19_v2_chr4_+_77172847_77172897	0.0623241	GLI3	ENST00000515604.1|FAM47E|ENSG00000272414.1|uncharacterized protein LOC100631383  	ENST00000539752.1|FAM47E-STBD1|ENSG00000118804.7|FAM47E-STBD1 readthrough 	ENST00000424749.2|FAM47E|ENSG00000189157.9|family with sequence similarity 47, member E
hg19_v2_chr10_-_62332357_62332428	0.0622932	GLI3	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr1_-_155177677_155177739	0.0622181	GLI3	ENST00000368378.3|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000541990.1|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000457183.2|THBS3|ENSG00000169231.9|thrombospondin 3
hg19_v2_chr9_+_79634571_79634571	0.0620516	GLI3	ENST00000376708.1|FOXB2|ENSG00000204612.1|forkhead box B2
hg19_v2_chr5_-_157002775_157002790	0.0617957	GLI3	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr17_-_73905899_73905899	0.0617322	GLI3	ENST00000409963.3|MRPL38|ENSG00000204316.8|mitochondrial ribosomal protein L38
hg19_v2_chr19_-_375970_375996	0.0613171	GLI3	ENST00000346878.2|THEG|ENSG00000105549.6|theg spermatid protein
hg19_v2_chr6_+_34204642_34204664	0.0612774	GLI3	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr11_+_124735282_124735332	0.0610724	GLI3	ENST00000397801.1|ROBO3|ENSG00000154134.10|roundabout, axon guidance receptor, homolog 3 (Drosophila)
hg19_v2_chr17_-_40897043_40897087	0.0610168	GLI3	ENST00000428826.2|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000592492.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000585893.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000593214.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000590078.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000586382.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000415827.2|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000592743.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000586089.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000435174.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila)
hg19_v2_chr19_+_18208603_18208614	0.0608903	GLI3	ENST00000262811.6|MAST3|ENSG00000099308.6|microtubule associated serine/threonine kinase 3
hg19_v2_chr1_+_183774285_183774294	0.0607002	GLI3	ENST00000539189.1|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr2_-_105946491_105946491	0.0601809	GLI3	ENST00000393359.2|TGFBRAP1|ENSG00000135966.8|transforming growth factor, beta receptor associated protein 1
hg19_v2_chr2_+_20068606_20068626	0.0598977	GLI3	ENST00000607100.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954
hg19_v2_chr13_-_67804445_67804475	0.0592305	GLI3	ENST00000456367.1|PCDH9|ENSG00000184226.10|protocadherin 9 	ENST00000377861.3|PCDH9|ENSG00000184226.10|protocadherin 9 	ENST00000544246.1|PCDH9|ENSG00000184226.10|protocadherin 9
hg19_v2_chr9_-_139891165_139891255	0.0591042	GLI3	ENST00000494426.1|CLIC3|ENSG00000169583.12|chloride intracellular channel 3
hg19_v2_chr1_+_180897269_180897295	0.0589069	GLI3	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr16_+_27325202_27325313	0.0583399	GLI3	ENST00000395762.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000562142.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000561742.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000543915.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000449195.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000380922.3|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000563002.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr1_+_24117693_24117717	0.0581983	GLI3	ENST00000374503.3|LYPLA2|ENSG00000011009.6|lysophospholipase II 	ENST00000374502.3|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr8_+_98900132_98900205	0.057945	GLI3	ENST00000520016.1|MATN2|ENSG00000132561.9|matrilin 2
hg19_v2_chr14_-_23770683_23770792	0.0578904	GLI3	ENST00000561437.1|PPP1R3E|ENSG00000235194.4|protein phosphatase 1, regulatory subunit 3E 	ENST00000559942.1|PPP1R3E|ENSG00000235194.4|protein phosphatase 1, regulatory subunit 3E 	ENST00000560913.1|PPP1R3E|ENSG00000235194.4|protein phosphatase 1, regulatory subunit 3E 	ENST00000559314.1|PPP1R3E|ENSG00000235194.4|protein phosphatase 1, regulatory subunit 3E 	ENST00000558058.1|PPP1R3E|ENSG00000235194.4|protein phosphatase 1, regulatory subunit 3E
hg19_v2_chr1_+_44399347_44399444	0.0577572	GLI3	ENST00000477048.1|ARTN|ENSG00000117407.12|artemin 	ENST00000471394.2|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr22_+_41258250_41258269	0.057554	GLI3	ENST00000544094.1|XPNPEP3|ENSG00000196236.8|X-prolyl aminopeptidase (aminopeptidase P) 3, putative
hg19_v2_chr1_+_15479054_15479073	0.0568524	GLI3	ENST00000376014.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000451326.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr3_+_186649133_186649149	0.0567826	GLI3	ENST00000417392.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr19_+_57901208_57901280	0.0565583	GLI3	ENST00000366197.5|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000596282.1|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000597400.1|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000598895.1|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000596617.1|AC003002.6|ENSG00000269533.1|Uncharacterized protein  	ENST00000336128.7|ZNF548|ENSG00000188785.7|zinc finger protein 548
hg19_v2_chr17_+_80842656_80842684	0.0560709	GLI3	ENST00000576760.1|TBCD|ENSG00000141556.16|tubulin folding cofactor D
hg19_v2_chr6_-_30181156_30181209	0.0558136	GLI3	ENST00000418026.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000416596.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000453195.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26
hg19_v2_chr11_+_10477733_10477831	0.0557483	GLI3	ENST00000528723.1|AMPD3|ENSG00000133805.11|adenosine monophosphate deaminase 3
hg19_v2_chr17_+_40440094_40440190	0.0548852	GLI3	ENST00000546010.2|STAT5A|ENSG00000126561.12|signal transducer and activator of transcription 5A
hg19_v2_chr5_-_169816638_169816681	0.0548493	GLI3	ENST00000521859.1|KCNMB1|ENSG00000145936.4|potassium large conductance calcium-activated channel, subfamily M, beta member 1 	ENST00000274629.4|KCNMB1|ENSG00000145936.4|potassium large conductance calcium-activated channel, subfamily M, beta member 1
hg19_v2_chr5_+_175976324_175976392	0.0547576	GLI3	ENST00000261944.5|CDHR2|ENSG00000074276.6|cadherin-related family member 2
hg19_v2_chr10_+_102729249_102729308	0.0547512	GLI3	ENST00000519649.1|SEMA4G|ENSG00000095539.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G 	ENST00000518124.1|SEMA4G|ENSG00000095539.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
hg19_v2_chrX_-_101771645_101771712	0.0545944	GLI3	ENST00000289373.4|TMSB15A|ENSG00000158164.6|thymosin beta 15a
hg19_v2_chr19_-_19051993_19052073	0.0542323	GLI3	ENST00000594794.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000355887.6|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000392351.3|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000596482.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr21_-_47738112_47738133	0.0538168	GLI3	ENST00000417060.1|C21orf58|ENSG00000160298.13|chromosome 21 open reading frame 58
hg19_v2_chr16_-_5116025_5116111	0.0536316	GLI3	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chr19_-_20748541_20748568	0.0526678	GLI3	ENST00000427401.4|ZNF737|ENSG00000237440.4|zinc finger protein 737 	ENST00000594419.1|ZNF737|ENSG00000237440.4|zinc finger protein 737
hg19_v2_chr10_+_124214164_124214184	0.0523445	GLI3	ENST00000528446.1|ARMS2|ENSG00000254636.1|age-related maculopathy susceptibility 2
hg19_v2_chr2_-_27545921_27545981	0.0520235	GLI3	ENST00000402310.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000405983.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000403262.2|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000428910.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000402722.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000399052.4|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000380044.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000405076.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein
hg19_v2_chr16_-_67840442_67840555	0.0519356	GLI3	ENST00000536251.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000448631.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000602677.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000411657.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000425512.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000317506.3|RANBP10|ENSG00000141084.6|RAN binding protein 10
hg19_v2_chr4_+_119606523_119606570	0.0518222	GLI3	ENST00000388822.5|METTL14|ENSG00000145388.10|methyltransferase like 14 	ENST00000506780.1|METTL14|ENSG00000145388.10|methyltransferase like 14 	ENST00000508801.1|METTL14|ENSG00000145388.10|methyltransferase like 14
hg19_v2_chr8_-_135708787_135708805	0.0516371	GLI3	ENST00000520356.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520727.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520214.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000518191.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000429442.2|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing
hg19_v2_chr11_-_64646086_64646191	0.0514762	GLI3	ENST00000320631.3|EHD1|ENSG00000110047.13|EH-domain containing 1
hg19_v2_chr19_-_48389651_48389656	0.0514451	GLI3	ENST00000222002.3|SULT2A1|ENSG00000105398.3|sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
hg19_v2_chr19_-_40596828_40596855	0.051402	GLI3	ENST00000414720.2|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000455521.1|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000340963.5|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000595773.1|ZNF780A|ENSG00000197782.10|zinc finger protein 780A
hg19_v2_chr3_+_127323739_127323739	0.0513783	GLI3	ENST00000491422.1|MCM2|ENSG00000073111.9|minichromosome maintenance complex component 2
hg19_v2_chr17_-_7531121_7531198	0.0513589	GLI3	ENST00000573566.1|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2 	ENST00000269298.5|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2
hg19_v2_chrX_+_55744228_55744318	0.0512108	GLI3	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr17_-_39928106_39928152	0.0510546	GLI3	ENST00000540235.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr21_+_45879814_45879814	0.0509232	GLI3	ENST00000596691.1|LRRC3DN|ENSG00000269430.1|LRRC3 downstream neighbor (non-protein coding)
hg19_v2_chr3_-_15469045_15469056	0.05089	GLI3	ENST00000450816.2|METTL6|ENSG00000206562.7|methyltransferase like 6
hg19_v2_chr17_+_31255165_31255228	0.0506914	GLI3	ENST00000578289.1|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000439138.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr19_-_49121054_49121145	0.0505172	GLI3	ENST00000546623.1|RPL18|ENSG00000063177.8|ribosomal protein L18 	ENST00000084795.5|RPL18|ENSG00000063177.8|ribosomal protein L18
hg19_v2_chrX_-_134186144_134186228	0.0503166	GLI3	ENST00000370775.2|FAM127B|ENSG00000203950.6|family with sequence similarity 127, member B
hg19_v2_chr19_+_708910_708975	0.0501657	GLI3	ENST00000264560.7|PALM|ENSG00000099864.13|paralemmin
hg19_v2_chr7_+_23338819_23338973	0.0500568	GLI3	ENST00000466681.1|MALSU1|ENSG00000156928.4|mitochondrial assembly of ribosomal large subunit 1
hg19_v2_chr16_+_31044812_31044931	0.05001	GLI3	ENST00000313843.3|STX4|ENSG00000103496.10|syntaxin 4
hg19_v2_chr10_+_105156364_105156448	0.0499499	GLI3	ENST00000369797.3|PDCD11|ENSG00000148843.9|programmed cell death 11
hg19_v2_chr7_+_1126437_1126458	0.0498429	GLI3	ENST00000413368.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1 	ENST00000397092.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chr15_-_63449663_63449698	0.0498398	GLI3	ENST00000439025.1|RPS27L|ENSG00000185088.8|ribosomal protein S27-like
hg19_v2_chr21_-_32716556_32716609	0.0497436	GLI3	ENST00000455508.1|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr16_-_57832004_57832027	0.049672	GLI3	ENST00000562503.1|KIFC3|ENSG00000140859.11|kinesin family member C3
hg19_v2_chr17_-_36348610_36348666	0.0496589	GLI3	ENST00000339023.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3 	ENST00000354664.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr6_-_33282163_33282211	0.0495029	GLI3	ENST00000434618.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000456592.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chrX_-_20237059_20237081	0.0494036	GLI3	ENST00000457145.1|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chrX_+_153046456_153046571	0.0490335	GLI3	ENST00000393786.3|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370104.1|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370108.3|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370101.3|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000430541.1|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370100.1|SRPK3|ENSG00000184343.6|SRSF protein kinase 3
hg19_v2_chr22_+_20905286_20905316	0.0489185	GLI3	ENST00000428629.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr12_-_56122220_56122266	0.0488432	GLI3	ENST00000552692.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr1_+_202183200_202183283	0.0487499	GLI3	ENST00000439764.2|LGR6|ENSG00000133067.13|leucine-rich repeat containing G protein-coupled receptor 6
hg19_v2_chr19_-_2051223_2051252	0.0487159	GLI3	ENST00000309340.7|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589534.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000250896.3|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589509.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr19_-_18366182_18366229	0.0484261	GLI3	ENST00000355502.3|PDE4C|ENSG00000105650.17|phosphodiesterase 4C, cAMP-specific
hg19_v2_chr19_+_49496782_49496873	0.0482915	GLI3	ENST00000601968.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2 	ENST00000596837.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2
hg19_v2_chr12_+_31227192_31227211	0.0478935	GLI3	ENST00000535317.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
hg19_v2_chr1_+_44679113_44679152	0.0478129	GLI3	ENST00000361745.6|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1 	ENST00000446292.1|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1 	ENST00000440641.1|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1 	ENST00000436069.1|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1 	ENST00000437511.1|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1
hg19_v2_chr1_+_209941942_209941964	0.0475992	GLI3	ENST00000487271.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3 	ENST00000477431.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr1_-_40254482_40254550	0.0475073	GLI3	ENST00000397360.2|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b 	ENST00000372827.3|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b
hg19_v2_chr12_+_50366620_50366735	0.0474766	GLI3	ENST00000315520.5|AQP6|ENSG00000086159.8|aquaporin 6, kidney specific
hg19_v2_chr1_-_41487415_41487426	0.0471764	GLI3	ENST00000372611.1|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr12_-_63328817_63328870	0.0471138	GLI3	ENST00000228705.6|PPM1H|ENSG00000111110.7|protein phosphatase, Mg2+/Mn2+ dependent, 1H
hg19_v2_chr5_+_150226085_150226085	0.0468015	GLI3	ENST00000522154.1|IRGM|ENSG00000237693.4|immunity-related GTPase family, M
hg19_v2_chr3_+_44626359_44626387	0.0464167	GLI3	ENST00000412641.1|ZNF197|ENSG00000186448.10|zinc finger protein 197
hg19_v2_chr16_-_1968231_1968441	0.0459662	GLI3	ENST00000443547.1|HS3ST6|ENSG00000162040.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 6 	ENST00000293937.3|HS3ST6|ENSG00000162040.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 6 	ENST00000454677.2|HS3ST6|ENSG00000162040.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 6
hg19_v2_chr16_+_20817761_20817837	0.0458033	GLI3	ENST00000568046.1|AC004381.6|ENSG00000005189.15|Putative RNA exonuclease NEF-sp  	ENST00000261377.6|AC004381.6|ENSG00000005189.15|Putative RNA exonuclease NEF-sp
hg19_v2_chr15_-_72490114_72490145	0.0453506	GLI3	ENST00000309731.7|GRAMD2|ENSG00000175318.7|GRAM domain containing 2
hg19_v2_chr3_-_12200851_12200885	0.0452679	GLI3	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr2_-_197458323_197458416	0.0452098	GLI3	ENST00000452031.1|HECW2|ENSG00000138411.6|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr5_-_141060389_141060439	0.0447393	GLI3	ENST00000504448.1|ARAP3|ENSG00000120318.11|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
hg19_v2_chr10_-_135116364_135116485	0.044518	GLI3	ENST00000252936.3|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2 	ENST00000543663.1|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2
hg19_v2_chr8_-_145642203_145642235	0.0443254	GLI3	ENST00000526658.1|SLC39A4|ENSG00000147804.5|solute carrier family 39 (zinc transporter), member 4
hg19_v2_chr3_-_25824353_25824400	0.0442329	GLI3	ENST00000427041.1|NGLY1|ENSG00000151092.12|N-glycanase 1
hg19_v2_chr1_-_31902614_31902614	0.044092	GLI3	ENST00000596131.1|AC114494.1|ENSG00000268950.1|HCG1787699; Uncharacterized protein
hg19_v2_chr22_+_38349670_38349723	0.0435225	GLI3	ENST00000442738.2|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000460648.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000407936.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000488684.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000492213.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000606538.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000405557.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr17_+_28443799_28443813	0.0434053	GLI3	ENST00000584423.1|NSRP1|ENSG00000126653.11|nuclear speckle splicing regulatory protein 1 	ENST00000247026.5|NSRP1|ENSG00000126653.11|nuclear speckle splicing regulatory protein 1
hg19_v2_chr7_-_105029812_105029860	0.0433661	GLI3	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr19_+_35491330_35491373	0.0433204	GLI3	ENST00000411896.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000424536.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr7_-_47578840_47578876	0.0432667	GLI3	ENST00000450444.1|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr3_-_176915036_176915047	0.0428942	GLI3	ENST00000427349.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000352800.5|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr12_-_122711968_122712008	0.0423985	GLI3	ENST00000485724.1|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein
hg19_v2_chr12_-_9102224_9102331	0.0421752	GLI3	ENST00000543845.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent) 	ENST00000544245.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr22_+_29279552_29279586	0.0419601	GLI3	ENST00000544604.2|ZNRF3|ENSG00000183579.11|zinc and ring finger 3
hg19_v2_chr16_+_2014993_2015049	0.0418258	GLI3	ENST00000564014.1|SNHG9|ENSG00000255198.3|small nucleolar RNA host gene 9 (non-protein coding)
hg19_v2_chr14_-_100046444_100046463	0.0418091	GLI3	ENST00000554996.1|CCDC85C|ENSG00000205476.4|coiled-coil domain containing 85C
hg19_v2_chr3_-_59035673_59035810	0.0414981	GLI3	ENST00000491845.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000472469.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000471288.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000295966.7|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67
hg19_v2_chr8_+_94929110_94929167	0.041295	GLI3	ENST00000520728.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr9_-_134406565_134406608	0.0412936	GLI3	ENST00000372210.3|UCK1|ENSG00000130717.8|uridine-cytidine kinase 1 	ENST00000372211.3|UCK1|ENSG00000130717.8|uridine-cytidine kinase 1
hg19_v2_chr17_-_40168698_40168726	0.0412065	GLI3	ENST00000590774.1|DNAJC7|ENSG00000168259.10|DnaJ (Hsp40) homolog, subfamily C, member 7
hg19_v2_chr16_+_30194916_30194955	0.0406972	GLI3	ENST00000570045.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000565497.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000570244.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr19_-_2085323_2085391	0.0405759	GLI3	ENST00000591638.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr3_-_182817297_182817356	0.0405505	GLI3	ENST00000539926.1|MCCC1|ENSG00000078070.7|methylcrotonoyl-CoA carboxylase 1 (alpha) 	ENST00000476176.1|MCCC1|ENSG00000078070.7|methylcrotonoyl-CoA carboxylase 1 (alpha)
hg19_v2_chr17_+_61554413_61554434	0.0405241	GLI3	ENST00000538928.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000290866.4|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000428043.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme
hg19_v2_chr11_+_5712234_5712264	0.0403728	GLI3	ENST00000414641.1|TRIM22|ENSG00000132274.11|tripartite motif containing 22
hg19_v2_chr5_-_179107975_179108039	0.0402953	GLI3	ENST00000376974.4|CBY3|ENSG00000204659.4|chibby homolog 3 (Drosophila)
hg19_v2_chr5_+_175490540_175490540	0.0402323	GLI3	ENST00000515817.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr3_-_48130707_48130789	0.0402075	GLI3	ENST00000360240.6|MAP4|ENSG00000047849.17|microtubule-associated protein 4 	ENST00000383737.4|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr11_-_73587719_73588033	0.040101	GLI3	ENST00000545127.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000537289.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000355693.4|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae)
hg19_v2_chr11_+_118958689_118958710	0.0400221	GLI3	ENST00000535253.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000392841.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase
hg19_v2_chr10_+_17270214_17270258	0.0399339	GLI3	ENST00000544301.1|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr3_+_47844399_47844457	0.0395985	GLI3	ENST00000446256.2|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30 	ENST00000445061.1|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30
hg19_v2_chr3_-_155011483_155011564	0.0394611	GLI3	ENST00000489090.1|RP11-451G4.2|ENSG00000240045.1|RP11-451G4.2
hg19_v2_chr7_+_66386204_66386249	0.0394396	GLI3	ENST00000341567.4|TMEM248|ENSG00000106609.12|transmembrane protein 248 	ENST00000607045.1|TMEM248|ENSG00000106609.12|transmembrane protein 248
hg19_v2_chr6_-_110736742_110736782	0.0394274	GLI3	ENST00000368924.3|DDO|ENSG00000203797.5|D-aspartate oxidase 	ENST00000368923.3|DDO|ENSG00000203797.5|D-aspartate oxidase
hg19_v2_chr21_-_46348694_46348788	0.0393565	GLI3	ENST00000355153.4|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397850.2|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr11_+_576494_576521	0.0392862	GLI3	ENST00000533464.1|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000413872.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000416188.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1
hg19_v2_chr7_+_130131907_130131947	0.0392653	GLI3	ENST00000223215.4|MEST|ENSG00000106484.10|mesoderm specific transcript 	ENST00000437945.1|MEST|ENSG00000106484.10|mesoderm specific transcript
hg19_v2_chr15_-_90456114_90456151	0.0392594	GLI3	ENST00000398333.3|C15orf38-AP3S2|ENSG00000250021.3|C15orf38-AP3S2 readthrough
hg19_v2_chr17_+_79981144_79981202	0.0391763	GLI3	ENST00000306688.3|LRRC45|ENSG00000169683.3|leucine rich repeat containing 45
hg19_v2_chr1_+_240255166_240255197	0.0391675	GLI3	ENST00000319653.9|FMN2|ENSG00000155816.15|formin 2
hg19_v2_chr7_+_7196565_7196714	0.0390353	GLI3	ENST00000429911.1|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chr17_-_73178599_73178714	0.0386934	GLI3	ENST00000578238.1|SUMO2|ENSG00000188612.7|small ubiquitin-like modifier 2
hg19_v2_chr11_-_65640325_65640377	0.0385706	GLI3	ENST00000307998.6|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr19_+_58740266_58740341	0.0384747	GLI3	ENST00000597240.1|ZNF544|ENSG00000198131.9|zinc finger protein 544 	ENST00000594384.1|ZNF544|ENSG00000198131.9|zinc finger protein 544 	ENST00000596825.1|ZNF544|ENSG00000198131.9|zinc finger protein 544
hg19_v2_chr14_+_72052983_72053003	0.0383913	GLI3	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr7_+_89841024_89841094	0.0383787	GLI3	ENST00000394626.1|STEAP2|ENSG00000157214.9|STEAP family member 2, metalloreductase
hg19_v2_chr7_-_97501432_97501451	0.0383759	GLI3	ENST00000394309.3|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr3_-_52739670_52739730	0.0379106	GLI3	ENST00000497953.1|GLT8D1|ENSG00000016864.12|glycosyltransferase 8 domain containing 1
hg19_v2_chr6_+_170151887_170151902	0.0376981	GLI3	ENST00000588451.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation
hg19_v2_chr9_-_139371533_139371567	0.0376228	GLI3	ENST00000290037.6|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae) 	ENST00000431893.2|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae) 	ENST00000371706.3|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae)
hg19_v2_chr1_-_157108266_157108347	0.0375456	GLI3	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr12_-_57882498_57882509	0.0374575	GLI3	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr16_+_89894911_89894955	0.0372762	GLI3	ENST00000378247.3|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2 	ENST00000563972.1|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr10_-_43903217_43903267	0.0372317	GLI3	ENST00000357065.4|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr6_+_28109703_28109716	0.0372285	GLI3	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chr12_+_57984943_57984964	0.0370975	GLI3	ENST00000422156.3|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr10_-_105615164_105615323	0.0369393	GLI3	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr6_-_29600559_29600690	0.0366149	GLI3	ENST00000476670.1|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr19_-_35323762_35323779	0.036526	GLI3	ENST00000590963.1|CTC-523E23.4|ENSG00000267767.2|CTC-523E23.4
hg19_v2_chr13_+_32313658_32313679	0.0364291	GLI3	ENST00000380314.1|RXFP2|ENSG00000133105.3|relaxin/insulin-like family peptide receptor 2 	ENST00000298386.2|RXFP2|ENSG00000133105.3|relaxin/insulin-like family peptide receptor 2
hg19_v2_chr12_+_104609550_104609563	0.0362631	GLI3	ENST00000525566.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000429002.2|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chr9_+_90112590_90112611	0.0360939	GLI3	ENST00000472284.1|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr9_+_95997205_95997205	0.0358889	GLI3	ENST00000411624.1|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2
hg19_v2_chr16_+_2564254_2564305	0.035881	GLI3	ENST00000565223.1|ATP6V0C|ENSG00000185883.6|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
hg19_v2_chr8_-_142011036_142011127	0.0358696	GLI3	ENST00000520892.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr12_-_50101165_50101259	0.0354864	GLI3	ENST00000352151.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000335154.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000293590.5|FMNL3|ENSG00000161791.9|formin-like 3
hg19_v2_chr14_+_74058410_74058410	0.0352822	GLI3	ENST00000326303.4|ACOT4|ENSG00000177465.4|acyl-CoA thioesterase 4
hg19_v2_chr1_+_104197912_104197912	0.0350048	GLI3	ENST00000430659.1|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr1_-_204380919_204380953	0.0345735	GLI3	ENST00000367188.4|PPP1R15B|ENSG00000158615.8|protein phosphatase 1, regulatory subunit 15B
hg19_v2_chr1_+_161195835_161195864	0.0345582	GLI3	ENST00000545897.1|TOMM40L|ENSG00000158882.8|translocase of outer mitochondrial membrane 40 homolog (yeast)-like
hg19_v2_chr16_-_88770019_88770033	0.0344114	GLI3	ENST00000541206.2|RNF166|ENSG00000158717.6|ring finger protein 166
hg19_v2_chr22_-_21482046_21482046	0.0343333	GLI3	ENST00000419447.1|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr7_-_4923315_4923360	0.0340963	GLI3	ENST00000399583.3|RADIL|ENSG00000157927.12|Ras association and DIL domains
hg19_v2_chr21_+_45079409_45079452	0.0340468	GLI3	ENST00000340648.4|RRP1B|ENSG00000160208.11|ribosomal RNA processing 1B
hg19_v2_chr20_-_1306351_1306367	0.0340193	GLI3	ENST00000381812.1|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr12_+_125549925_125549956	0.0338705	GLI3	ENST00000316519.6|AACS|ENSG00000081760.12|acetoacetyl-CoA synthetase
hg19_v2_chr2_+_192109911_192110170	0.0337829	GLI3	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr9_+_99449322_99449347	0.0337121	GLI3	ENST00000423924.1|RP11-535M15.1|ENSG00000224848.1|RP11-535M15.1
hg19_v2_chr17_-_3461092_3461126	0.0331184	GLI3	ENST00000301365.4|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3 	ENST00000572519.1|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3
hg19_v2_chr16_+_30194118_30194165	0.0329223	GLI3	ENST00000563778.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr19_+_37837185_37837199	0.0327333	GLI3	ENST00000541583.2|HKR1|ENSG00000181666.13|HKR1, GLI-Kruppel zinc finger family member
hg19_v2_chr1_-_45253377_45253377	0.0326837	GLI3	ENST00000372207.3|BEST4|ENSG00000142959.4|bestrophin 4
hg19_v2_chr22_+_46481861_46481895	0.0324504	GLI3	ENST00000360737.3|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr1_-_47407097_47407107	0.0324033	GLI3	ENST00000457840.2|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr19_+_54619125_54619189	0.0319933	GLI3	ENST00000445811.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000419967.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000445124.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000447810.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31
hg19_v2_chr21_-_33651324_33651380	0.0318288	GLI3	ENST00000290130.3|MIS18A|ENSG00000159055.3|MIS18 kinetochore protein A
hg19_v2_chr16_+_68573116_68573228	0.0317503	GLI3	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr2_-_242041607_242041747	0.0317131	GLI3	ENST00000434791.1|MTERFD2|ENSG00000122085.12|MTERF domain containing 2 	ENST00000401626.2|MTERFD2|ENSG00000122085.12|MTERF domain containing 2 	ENST00000439144.1|MTERFD2|ENSG00000122085.12|MTERF domain containing 2 	ENST00000406593.1|MTERFD2|ENSG00000122085.12|MTERF domain containing 2 	ENST00000495694.1|MTERFD2|ENSG00000122085.12|MTERF domain containing 2 	ENST00000407095.3|MTERFD2|ENSG00000122085.12|MTERF domain containing 2 	ENST00000391980.2|MTERFD2|ENSG00000122085.12|MTERF domain containing 2
hg19_v2_chr1_+_55464600_55464608	0.0316517	GLI3	ENST00000371265.4|BSND|ENSG00000162399.6|Bartter syndrome, infantile, with sensorineural deafness (Barttin)
hg19_v2_chr1_+_201951741_201951794	0.0313422	GLI3	ENST00000295640.4|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B) 	ENST00000367286.3|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B)
hg19_v2_chr7_+_1022811_1022835	0.0313288	GLI3	ENST00000308919.7|CYP2W1|ENSG00000073067.9|cytochrome P450, family 2, subfamily W, polypeptide 1
hg19_v2_chr10_+_115312766_115312786	0.0312915	GLI3	ENST00000351270.3|HABP2|ENSG00000148702.10|hyaluronan binding protein 2
hg19_v2_chr15_-_43882140_43882140	0.0311908	GLI3	ENST00000429176.1|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1
hg19_v2_chr5_-_138739739_138739793	0.0308739	GLI3	ENST00000514983.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000507779.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000451821.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000450845.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000509959.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000302091.5|SPATA24|ENSG00000170469.6|spermatogenesis associated 24
hg19_v2_chr11_-_36310958_36310999	0.030285	GLI3	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr15_-_101817616_101817710	0.030278	GLI3	ENST00000526049.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000398226.3|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000537379.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein
hg19_v2_chr16_-_55867146_55867249	0.0302234	GLI3	ENST00000422046.2|CES1|ENSG00000198848.8|carboxylesterase 1
hg19_v2_chr12_-_51785083_51785093	0.029995	GLI3	ENST00000603563.1|GALNT6|ENSG00000139629.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
hg19_v2_chr3_+_124355944_124356002	0.0298988	GLI3	ENST00000459915.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr7_+_130126012_130126069	0.029693	GLI3	ENST00000341441.5|MEST|ENSG00000106484.10|mesoderm specific transcript
hg19_v2_chrX_+_151999511_151999561	0.0294739	GLI3	ENST00000370274.3|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000440023.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000432467.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like
hg19_v2_chr17_+_6554971_6554995	0.0294349	GLI3	ENST00000391428.2|C17orf100|ENSG00000212734.4|chromosome 17 open reading frame 100
hg19_v2_chr2_-_171627269_171627285	0.0293533	GLI3	ENST00000442456.1|AC007405.4|ENSG00000234350.1|AC007405.4
hg19_v2_chr7_-_97501706_97501727	0.0292808	GLI3	ENST00000455086.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing) 	ENST00000453600.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr20_+_34742650_34742678	0.0292099	GLI3	ENST00000373945.1|EPB41L1|ENSG00000088367.16|erythrocyte membrane protein band 4.1-like 1 	ENST00000338074.2|EPB41L1|ENSG00000088367.16|erythrocyte membrane protein band 4.1-like 1
hg19_v2_chr2_+_102928009_102928033	0.0291756	GLI3	ENST00000404917.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000447231.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr8_-_98290087_98290197	0.0291296	GLI3	ENST00000322128.3|TSPYL5|ENSG00000180543.3|TSPY-like 5
hg19_v2_chr12_-_54778444_54778457	0.0290891	GLI3	ENST00000551771.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr12_-_112819896_112819896	0.0286797	GLI3	ENST00000377560.5|HECTD4|ENSG00000173064.6|HECT domain containing E3 ubiquitin protein ligase 4 	ENST00000430131.2|HECTD4|ENSG00000173064.6|HECT domain containing E3 ubiquitin protein ligase 4 	ENST00000550722.1|HECTD4|ENSG00000173064.6|HECT domain containing E3 ubiquitin protein ligase 4 	ENST00000550724.1|HECTD4|ENSG00000173064.6|HECT domain containing E3 ubiquitin protein ligase 4
hg19_v2_chr2_-_26205550_26205624	0.0286008	GLI3	ENST00000405914.1|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr1_-_47407136_47407154	0.0285672	GLI3	ENST00000462347.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000371905.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000310638.4|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr19_+_4153598_4153665	0.0285174	GLI3	ENST00000078445.2|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000252587.3|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000595923.1|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000602257.1|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000602147.1|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3
hg19_v2_chr11_-_73309112_73309221	0.0284706	GLI3	ENST00000450446.2|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A
hg19_v2_chr7_+_1126461_1126512	0.0284636	GLI3	ENST00000297469.3|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chr1_+_19923454_19923561	0.0282945	GLI3	ENST00000602662.1|MINOS1-NBL1|ENSG00000270136.1|MINOS1-NBL1 readthrough 	ENST00000322753.6|MINOS1|ENSG00000173436.9|mitochondrial inner membrane organizing system 1 	ENST00000602293.1|MINOS1-NBL1|ENSG00000270136.1|MINOS1-NBL1 readthrough
hg19_v2_chr11_+_46402297_46402306	0.0280213	GLI3	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr1_+_150521876_150521901	0.0279651	GLI3	ENST00000369041.5|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4 	ENST00000538795.1|AL356356.1|ENSG00000225996.2|Protein LOC100996516  	ENST00000271643.4|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4
hg19_v2_chr1_+_167691191_167691389	0.027595	GLI3	ENST00000392121.3|MPZL1|ENSG00000197965.7|myelin protein zero-like 1 	ENST00000474859.1|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr1_+_28655505_28655629	0.0275505	GLI3	ENST00000373842.4|MED18|ENSG00000130772.9|mediator complex subunit 18 	ENST00000398997.2|MED18|ENSG00000130772.9|mediator complex subunit 18
hg19_v2_chr11_+_73003824_73003859	0.027417	GLI3	ENST00000538328.1|P2RY6|ENSG00000171631.10|pyrimidinergic receptor P2Y, G-protein coupled, 6
hg19_v2_chr5_-_132113036_132113061	0.0273615	GLI3	ENST00000378706.1|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr9_-_34637718_34637791	0.0269644	GLI3	ENST00000378892.1|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1 	ENST00000277010.4|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1
hg19_v2_chr16_+_2097403_2097466	0.026797	GLI3	ENST00000219476.3|TSC2|ENSG00000103197.12|tuberous sclerosis 2
hg19_v2_chr7_+_38217920_38218003	0.0266305	GLI3	ENST00000396013.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000440144.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000453225.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000429075.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like
hg19_v2_chr3_+_15469058_15469141	0.0263817	GLI3	ENST00000432764.2|EAF1|ENSG00000144597.9|ELL associated factor 1
hg19_v2_chr14_-_74960030_74960050	0.0260816	GLI3	ENST00000553490.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000557510.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr17_-_27224621_27224759	0.0259451	GLI3	ENST00000394906.2|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000585169.1|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000394908.4|FLOT2|ENSG00000132589.11|flotillin 2
hg19_v2_chr14_-_91976794_91976871	0.0256344	GLI3	ENST00000555462.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v2_chr4_-_122148620_122148647	0.0251429	GLI3	ENST00000509841.1|TNIP3|ENSG00000050730.11|TNFAIP3 interacting protein 3
hg19_v2_chr16_+_70148230_70148275	0.024969	GLI3	ENST00000398122.3|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit 	ENST00000568530.1|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit
hg19_v2_chr2_-_95787738_95787763	0.0249611	GLI3	ENST00000272418.2|MRPS5|ENSG00000144029.7|mitochondrial ribosomal protein S5
hg19_v2_chr4_+_166300084_166300094	0.0244381	GLI3	ENST00000402744.4|CPE|ENSG00000109472.9|carboxypeptidase E
hg19_v2_chr5_+_175487692_175487692	0.0243113	GLI3	ENST00000510151.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr1_-_104239302_104239302	0.0240934	GLI3	ENST00000446703.1|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr19_+_19779619_19779670	0.024076	GLI3	ENST00000444249.2|ZNF101|ENSG00000181896.7|zinc finger protein 101 	ENST00000592502.1|ZNF101|ENSG00000181896.7|zinc finger protein 101
hg19_v2_chr19_+_45349630_45349783	0.024046	GLI3	ENST00000252483.5|PVRL2|ENSG00000130202.5|poliovirus receptor-related 2 (herpesvirus entry mediator B)
hg19_v2_chr15_-_74421477_74421619	0.0239736	GLI3	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chr5_+_65892174_65892229	0.0238274	GLI3	ENST00000404260.3|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000403625.2|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000406374.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr20_+_49411543_49411635	0.0235914	GLI3	ENST00000609336.1|BCAS4|ENSG00000124243.13|breast carcinoma amplified sequence 4 	ENST00000445038.1|BCAS4|ENSG00000124243.13|breast carcinoma amplified sequence 4
hg19_v2_chr1_+_108918421_108918421	0.0234976	GLI3	ENST00000444143.2|NBPF6|ENSG00000186086.12|neuroblastoma breakpoint family, member 6 	ENST00000294652.8|NBPF6|ENSG00000186086.12|neuroblastoma breakpoint family, member 6
hg19_v2_chr7_+_29846099_29846181	0.023454	GLI3	ENST00000409123.1|WIPF3|ENSG00000122574.6|WAS/WASL interacting protein family, member 3
hg19_v2_chr1_+_3388181_3388194	0.0232549	GLI3	ENST00000418137.1|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16 	ENST00000413250.2|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16
hg19_v2_chrX_-_148713365_148713438	0.0229753	GLI3	ENST00000511776.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000507237.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr1_+_247670415_247670426	0.0229544	GLI3	ENST00000366491.2|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000366489.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000526896.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like
hg19_v2_chr12_-_54813229_54813273	0.0226992	GLI3	ENST00000293379.4|ITGA5|ENSG00000161638.6|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
hg19_v2_chr11_-_47198380_47198448	0.0225374	GLI3	ENST00000419701.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000526342.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000528444.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000530596.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525398.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000319543.6|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000426335.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000527927.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525314.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2
hg19_v2_chr21_-_37432764_37432831	0.0224599	GLI3	ENST00000399212.1|SETD4|ENSG00000185917.9|SET domain containing 4 	ENST00000446166.1|SETD4|ENSG00000185917.9|SET domain containing 4
hg19_v2_chr17_-_42298201_42298284	0.0221436	GLI3	ENST00000527034.1|UBTF|ENSG00000108312.10|upstream binding transcription factor, RNA polymerase I
hg19_v2_chr2_-_26101374_26101389	0.0218769	GLI3	ENST00000435504.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila)
hg19_v2_chr12_+_132568814_132569025	0.0218174	GLI3	ENST00000454179.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000389560.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000443539.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000392352.1|EP400NL|ENSG00000185684.8|EP400 N-terminal like
hg19_v2_chr22_+_39898325_39898382	0.0216868	GLI3	ENST00000325301.2|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1 	ENST00000404569.1|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1
hg19_v2_chr12_+_6602517_6602559	0.0216771	GLI3	ENST00000315579.5|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2 	ENST00000539714.1|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2
hg19_v2_chr5_-_79551838_79551854	0.0215957	GLI3	ENST00000509193.1|SERINC5|ENSG00000164300.11|serine incorporator 5 	ENST00000512972.2|SERINC5|ENSG00000164300.11|serine incorporator 5
hg19_v2_chr6_-_28226984_28227011	0.0215542	GLI3	ENST00000423974.2|ZKSCAN4|ENSG00000187626.7|zinc finger with KRAB and SCAN domains 4
hg19_v2_chr17_-_56621665_56621729	0.0215094	GLI3	ENST00000321691.3|C17orf47|ENSG00000181013.3|chromosome 17 open reading frame 47
hg19_v2_chr8_+_22435762_22435792	0.0213868	GLI3	ENST00000456545.1|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr16_+_68771128_68771255	0.021071	GLI3	ENST00000261769.5|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial) 	ENST00000422392.2|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial)
hg19_v2_chr19_-_11616645_11616738	0.0210021	GLI3	ENST00000293771.5|ZNF653|ENSG00000161914.5|zinc finger protein 653
hg19_v2_chr5_-_58571935_58571951	0.0209084	GLI3	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr22_+_39898391_39898413	0.0208961	GLI3	ENST00000434364.1|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1
hg19_v2_chr11_-_62341445_62341499	0.0205891	GLI3	ENST00000329251.4|EEF1G|ENSG00000254772.5|eukaryotic translation elongation factor 1 gamma
hg19_v2_chr7_-_121784285_121784350	0.0204268	GLI3	ENST00000417368.2|AASS|ENSG00000008311.10|aminoadipate-semialdehyde synthase
hg19_v2_chr14_-_74462922_74463011	0.0204108	GLI3	ENST00000553284.1|ENTPD5|ENSG00000187097.8|ectonucleoside triphosphate diphosphohydrolase 5
hg19_v2_chr17_+_46132037_46132080	0.0200672	GLI3	ENST00000582155.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000583378.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000536222.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1
hg19_v2_chr2_-_208031542_208031595	0.0198689	GLI3	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr17_-_40540586_40540600	0.0193482	GLI3	ENST00000264657.5|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr16_-_70729496_70729555	0.0192104	GLI3	ENST00000567648.1|VAC14|ENSG00000103043.10|Vac14 homolog (S. cerevisiae)
hg19_v2_chr7_-_112430647_112430776	0.0191946	GLI3	ENST00000312814.6|TMEM168|ENSG00000146802.8|transmembrane protein 168
hg19_v2_chr6_+_89790459_89790479	0.0191503	GLI3	ENST00000369472.1|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr7_+_143078652_143078754	0.0188807	GLI3	ENST00000354434.4|ZYX|ENSG00000159840.11|zyxin 	ENST00000449423.2|ZYX|ENSG00000159840.11|zyxin
hg19_v2_chr1_-_11865982_11866005	0.018838	GLI3	ENST00000418034.1|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr14_-_92414294_92414355	0.0184006	GLI3	ENST00000554468.1|FBLN5|ENSG00000140092.10|fibulin 5
hg19_v2_chr1_+_36396313_36396356	0.0183868	GLI3	ENST00000324350.5|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr2_-_84686552_84686624	0.0181443	GLI3	ENST00000393868.2|SUCLG1|ENSG00000163541.7|succinate-CoA ligase, alpha subunit
hg19_v2_chr17_-_34757039_34757050	0.0173353	GLI3	ENST00000455054.2|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000308078.7|TBC1D3C|ENSG00000234972.4|TBC1 domain family, member 3C
hg19_v2_chr1_-_155942086_155942145	0.0173338	GLI3	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr3_+_128598433_128598511	0.0170292	GLI3	ENST00000308982.7|ACAD9|ENSG00000177646.13|acyl-CoA dehydrogenase family, member 9 	ENST00000514336.1|ACAD9|ENSG00000177646.13|acyl-CoA dehydrogenase family, member 9
hg19_v2_chrX_-_152343394_152343394	0.0165541	GLI3	ENST00000370261.1|PNMA6B|ENSG00000203902.2|paraneoplastic Ma antigen family member 6B (pseudogene)
hg19_v2_chr1_+_153631130_153631217	0.0164311	GLI3	ENST00000368685.5|SNAPIN|ENSG00000143553.6|SNAP-associated protein
hg19_v2_chr11_+_125464758_125464858	0.0163536	GLI3	ENST00000529886.1|STT3A|ENSG00000134910.8|STT3A, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr14_+_105927191_105927231	0.0163207	GLI3	ENST00000550551.1|MTA1|ENSG00000182979.13|metastasis associated 1
hg19_v2_chr2_+_17935383_17935439	0.0162862	GLI3	ENST00000524465.1|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease 	ENST00000381254.2|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease 	ENST00000532257.1|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease
hg19_v2_chr1_+_45205591_45205625	0.016266	GLI3	ENST00000455186.1|KIF2C|ENSG00000142945.8|kinesin family member 2C
hg19_v2_chr12_+_122326662_122326768	0.0161659	GLI3	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr19_+_21688366_21688432	0.0161193	GLI3	ENST00000358491.4|ZNF429|ENSG00000197013.5|zinc finger protein 429 	ENST00000597078.1|ZNF429|ENSG00000197013.5|zinc finger protein 429
hg19_v2_chr4_-_96470350_96470373	0.0159719	GLI3	ENST00000504962.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000453304.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000506749.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans)
hg19_v2_chr6_+_43457317_43457360	0.0154957	GLI3	ENST00000438588.2|TJAP1|ENSG00000137221.10|tight junction associated protein 1 (peripheral)
hg19_v2_chr6_+_90272339_90272367	0.01549	GLI3	ENST00000522779.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6
hg19_v2_chr1_-_153585539_153585559	0.0152449	GLI3	ENST00000368706.4|S100A16|ENSG00000188643.6|S100 calcium binding protein A16
hg19_v2_chr9_+_90112741_90112761	0.0151878	GLI3	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr2_+_170683942_170683972	0.0150781	GLI3	ENST00000272793.5|UBR3|ENSG00000144357.12|ubiquitin protein ligase E3 component n-recognin 3 (putative)
hg19_v2_chr14_-_74959994_74960020	0.014948	GLI3	ENST00000238633.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000434013.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr17_+_39421591_39421591	0.0144805	GLI3	ENST00000391355.1|KRTAP9-6|ENSG00000212659.1|keratin associated protein 9-6
hg19_v2_chr9_+_109625378_109625458	0.0142684	GLI3	ENST00000277225.5|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000457913.1|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000472574.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr11_-_30607819_30607867	0.0140647	GLI3	ENST00000448418.2|MPPED2|ENSG00000066382.12|metallophosphoesterase domain containing 2
hg19_v2_chr15_+_85923797_85923844	0.0137554	GLI3	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr3_-_42623428_42623520	0.0133771	GLI3	ENST00000423701.2|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000420163.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000416880.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000536332.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000264454.3|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000273156.7|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
hg19_v2_chr13_+_113760098_113760121	0.0133669	GLI3	ENST00000346342.3|F7|ENSG00000057593.9|coagulation factor VII (serum prothrombin conversion accelerator) 	ENST00000541084.1|F7|ENSG00000057593.9|coagulation factor VII (serum prothrombin conversion accelerator) 	ENST00000375581.3|F7|ENSG00000057593.9|coagulation factor VII (serum prothrombin conversion accelerator)
hg19_v2_chr8_+_11141925_11141937	0.0133523	GLI3	ENST00000221086.3|MTMR9|ENSG00000104643.5|myotubularin related protein 9
hg19_v2_chr1_+_92414952_92414991	0.0133165	GLI3	ENST00000449584.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000427104.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000355011.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000448194.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000426141.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000450792.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000548992.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000552654.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000457265.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr2_-_43823093_43823113	0.0131938	GLI3	ENST00000405006.4|THADA|ENSG00000115970.14|thyroid adenoma associated
hg19_v2_chr12_+_1800179_1800250	0.0127694	GLI3	ENST00000357103.4|ADIPOR2|ENSG00000006831.9|adiponectin receptor 2
hg19_v2_chr6_-_43478239_43478424	0.0127038	GLI3	ENST00000372441.1|LRRC73|ENSG00000204052.4|leucine rich repeat containing 73
hg19_v2_chr17_-_2207062_2207116	0.0125749	GLI3	ENST00000263073.6|SMG6|ENSG00000070366.9|SMG6 nonsense mediated mRNA decay factor
hg19_v2_chr3_+_11314072_11314098	0.0125461	GLI3	ENST00000444619.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr20_-_23731893_23731920	0.0124911	GLI3	ENST00000398402.1|CST1|ENSG00000170373.4|cystatin SN
hg19_v2_chr16_+_89168753_89168765	0.0121947	GLI3	ENST00000544543.1|ACSF3|ENSG00000176715.11|acyl-CoA synthetase family member 3
hg19_v2_chr11_+_121461097_121461128	0.0121662	GLI3	ENST00000527934.1|SORL1|ENSG00000137642.8|sortilin-related receptor, L(DLR class) A repeats containing
hg19_v2_chr16_-_18801643_18801705	0.0118584	GLI3	ENST00000322989.4|RPS15A|ENSG00000134419.11|ribosomal protein S15a 	ENST00000563390.1|RPS15A|ENSG00000134419.11|ribosomal protein S15a
hg19_v2_chr22_+_21319396_21319465	0.0116729	GLI3	ENST00000399167.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3 	ENST00000399163.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3 	ENST00000441376.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3
hg19_v2_chr5_-_180668605_180668649	0.0116139	GLI3	ENST00000504128.1|GNB2L1|ENSG00000204628.7|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
hg19_v2_chr7_+_48211048_48211063	0.011521	GLI3	ENST00000435803.1|ABCA13|ENSG00000179869.10|ATP-binding cassette, sub-family A (ABC1), member 13
hg19_v2_chr17_-_80009209_80009449	0.0112791	GLI3	ENST00000429557.3|RFNG|ENSG00000169733.7|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 	ENST00000578356.1|RFNG|ENSG00000169733.7|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
hg19_v2_chr5_-_39270725_39270771	0.0109704	GLI3	ENST00000512138.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000512982.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000540520.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr1_+_32479430_32479597	0.0108774	GLI3	ENST00000327300.7|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1 	ENST00000492989.1|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1
hg19_v2_chr3_-_88108212_88108223	0.0104501	GLI3	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr22_-_20461786_20461786	0.0104091	GLI3	ENST00000426804.1|RIMBP3|ENSG00000196622.6|RIMS binding protein 3
hg19_v2_chr9_+_129097520_129097531	0.0103705	GLI3	ENST00000436593.3|MVB12B|ENSG00000196814.10|multivesicular body subunit 12B
hg19_v2_chr1_+_11866207_11866268	0.0102629	GLI3	ENST00000312413.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000346436.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr9_-_123476612_123476698	0.0100828	GLI3	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr2_+_242752474_242752522	0.0100642	GLI3	ENST00000435934.1|NEU4|ENSG00000204099.7|sialidase 4 	ENST00000435894.1|NEU4|ENSG00000204099.7|sialidase 4 	ENST00000426032.1|NEU4|ENSG00000204099.7|sialidase 4 	ENST00000420288.1|NEU4|ENSG00000204099.7|sialidase 4
hg19_v2_chr11_+_1968508_1968589	0.00993344	GLI3	ENST00000397298.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000381519.1|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000397297.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000381514.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000397294.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23
hg19_v2_chr19_-_19754404_19754478	0.00980409	GLI3	ENST00000587205.1|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000445806.2|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000203556.4|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr14_+_74960423_74960479	0.00962308	GLI3	ENST00000556816.1|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2 	ENST00000298818.8|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2 	ENST00000554924.1|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2
hg19_v2_chr18_+_52385068_52385114	0.00910328	GLI3	ENST00000586570.1|RAB27B|ENSG00000041353.5|RAB27B, member RAS oncogene family
hg19_v2_chr7_+_74379083_74379083	0.00886992	GLI3	ENST00000361825.7|GATSL1|ENSG00000183086.10|GATS protein-like 1
hg19_v2_chr18_-_60987220_60987386	0.00793895	GLI3	ENST00000398117.1|BCL2|ENSG00000171791.10|B-cell CLL/lymphoma 2
hg19_v2_chr22_+_31892261_31892278	0.00786181	GLI3	ENST00000432498.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000540643.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000443326.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000414585.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chr2_+_228736321_228736332	0.00725074	GLI3	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr7_+_73624276_73624311	0.0072173	GLI3	ENST00000475494.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2 	ENST00000398475.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2
hg19_v2_chr10_+_6130966_6131047	0.00714713	GLI3	ENST00000437845.2|RBM17|ENSG00000134453.11|RNA binding motif protein 17 	ENST00000432931.1|RBM17|ENSG00000134453.11|RNA binding motif protein 17
hg19_v2_chr4_-_20985632_20985664	0.00707265	GLI3	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr2_+_11273179_11273261	0.00705309	GLI3	ENST00000381585.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50 	ENST00000405022.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50
hg19_v2_chr17_-_1419878_1419912	0.00669764	GLI3	ENST00000449479.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000477910.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000542125.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000575172.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr10_-_135171510_135171544	0.00589389	GLI3	ENST00000278025.4|FUOM|ENSG00000148803.7|fucose mutarotase 	ENST00000368552.3|FUOM|ENSG00000148803.7|fucose mutarotase
hg19_v2_chr1_+_232940643_232940643	0.00546931	GLI3	ENST00000418460.1|MAP10|ENSG00000212916.3|microtubule-associated protein 10
hg19_v2_chr16_+_3508063_3508086	0.00545765	GLI3	ENST00000576787.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572942.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000576916.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000575076.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572131.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit
hg19_v2_chr11_-_8615488_8615505	0.00542165	GLI3	ENST00000315204.1|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000396672.1|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000396673.1|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr6_+_35704804_35704813	0.00539471	GLI3	ENST00000373869.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr17_-_3495644_3495677	0.00537781	GLI3	ENST00000310522.5|TRPV1|ENSG00000196689.6|transient receptor potential cation channel, subfamily V, member 1 	ENST00000425167.2|TRPV1|ENSG00000196689.6|transient receptor potential cation channel, subfamily V, member 1 	ENST00000576351.1|TRPV1|ENSG00000196689.6|transient receptor potential cation channel, subfamily V, member 1
hg19_v2_chr3_+_138067314_138067428	0.00531364	GLI3	ENST00000423968.2|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chr10_-_131640435_131640435	0.00525588	GLI3	ENST00000440978.1|EBF3|ENSG00000108001.9|early B-cell factor 3
hg19_v2_chr5_-_168727713_168727755	0.00523324	GLI3	ENST00000404867.3|SLIT3|ENSG00000184347.10|slit homolog 3 (Drosophila)
hg19_v2_chr17_+_42219267_42219329	0.00507058	GLI3	ENST00000319977.4|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53 	ENST00000585683.1|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53
hg19_v2_chr1_-_110306526_110306553	0.00506195	GLI3	ENST00000361965.4|EPS8L3|ENSG00000198758.6|EPS8-like 3 	ENST00000361852.4|EPS8L3|ENSG00000198758.6|EPS8-like 3
hg19_v2_chr19_+_49999631_49999711	0.00503958	GLI3	ENST00000270625.2|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000596873.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000594493.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000599561.1|RPS11|ENSG00000142534.2|ribosomal protein S11
hg19_v2_chr9_+_135285579_135285615	0.00489965	GLI3	ENST00000343036.2|C9orf171|ENSG00000188523.4|chromosome 9 open reading frame 171 	ENST00000393216.2|C9orf171|ENSG00000188523.4|chromosome 9 open reading frame 171
hg19_v2_chr2_-_74779744_74779774	0.00445808	GLI3	ENST00000409249.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chrX_+_15525426_15525441	0.00444884	GLI3	ENST00000342014.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr5_-_79551858_79551907	0.00442347	GLI3	ENST00000507668.2|SERINC5|ENSG00000164300.11|serine incorporator 5 	ENST00000512721.1|SERINC5|ENSG00000164300.11|serine incorporator 5
hg19_v2_chr5_-_1799965_1800009	0.00393554	GLI3	ENST00000508987.1|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36
hg19_v2_chr14_+_50291993_50291993	0.00376357	GLI3	ENST00000595378.1|AL627171.2|ENSG00000269832.1|HCG1786899; PRO2610; Uncharacterized protein
hg19_v2_chr20_-_1306391_1306513	0.00361546	GLI3	ENST00000339987.3|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr15_-_55790515_55790605	0.00352098	GLI3	ENST00000448430.2|DYX1C1|ENSG00000256061.3|dyslexia susceptibility 1 candidate 1 	ENST00000457155.2|DYX1C1|ENSG00000256061.3|dyslexia susceptibility 1 candidate 1
hg19_v2_chr18_+_13611763_13611815	0.00331594	GLI3	ENST00000585931.1|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr11_-_65363259_65363279	0.0032126	GLI3	ENST00000342202.4|KCNK7|ENSG00000173338.8|potassium channel, subfamily K, member 7
hg19_v2_chr3_+_46598888_46598888	0.00302277	GLI3	ENST00000599511.1|LUZPP1|ENSG00000268324.1|HCG1777807; Leucine zipper protein 3; Uncharacterized protein
hg19_v2_chrX_-_64196307_64196338	0.00246127	GLI3	ENST00000545618.1|ZC4H2|ENSG00000126970.11|zinc finger, C4H2 domain containing
hg19_v2_chr1_-_147142557_147142620	0.00244239	GLI3	ENST00000369238.6|ACP6|ENSG00000162836.7|acid phosphatase 6, lysophosphatidic
hg19_v2_chr1_+_167691185_167691188	0.00241255	GLI3	ENST00000359523.2|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr8_+_90914859_90914989	0.00239119	GLI3	ENST00000520659.1|OSGIN2|ENSG00000164823.5|oxidative stress induced growth inhibitor family member 2
hg19_v2_chr2_+_231921574_231921639	0.00238145	GLI3	ENST00000308696.6|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000373635.4|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000440838.1|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000409643.1|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
hg19_v2_chr15_-_65579177_65579253	0.00213238	GLI3	ENST00000444347.2|PARP16|ENSG00000138617.10|poly (ADP-ribose) polymerase family, member 16 	ENST00000261888.6|PARP16|ENSG00000138617.10|poly (ADP-ribose) polymerase family, member 16
hg19_v2_chr15_+_74287118_74287144	0.00201917	GLI3	ENST00000563500.1|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr1_+_209757051_209757074	0.00193068	GLI3	ENST00000009105.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000423146.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000361322.2|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG
hg19_v2_chr18_+_11752040_11752117	0.00177585	GLI3	ENST00000423027.3|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr5_+_179159813_179159851	0.00172281	GLI3	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chr16_+_28834303_28834467	0.00165732	GLI3	ENST00000340394.8|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000325215.6|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000395547.2|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000336783.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000382686.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000564304.1|ATXN2L|ENSG00000168488.14|ataxin 2-like
hg19_v2_chr11_+_65029421_65029459	0.00115985	GLI3	ENST00000541089.1|POLA2|ENSG00000014138.4|polymerase (DNA directed), alpha 2, accessory subunit
hg19_v2_chr15_-_43877062_43877090	0.0011492	GLI3	ENST00000381885.1|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1 	ENST00000396923.3|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1
hg19_v2_chr1_+_11832179_11832179	0.000821621	GLI3	ENST00000312793.5|C1orf167|ENSG00000215910.3|chromosome 1 open reading frame 167
hg19_v2_chr7_-_97501411_97501431	0.000740605	GLI3	ENST00000437628.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr19_-_54746600_54746649	0.000626702	GLI3	ENST00000245621.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000407860.2|LILRB3|ENSG00000204577.7|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 	ENST00000270464.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000419410.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000391735.3|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000396365.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000440558.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
hg19_v2_chr1_+_39456895_39456986	0.000609038	GLI3	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr5_+_149340282_149340336	0.000249821	GLI3	ENST00000286298.4|SLC26A2|ENSG00000155850.7|solute carrier family 26 (anion exchanger), member 2
hg19_v2_chr17_+_77030267_77030391	0.000129006	GLI3	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr2_+_233390890_233390903	0.000128297	GLI3	ENST00000258385.3|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle) 	ENST00000536614.1|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle) 	ENST00000457943.2|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle)
