hg19_v2_chr7_+_106415457_106415522	0.156132	FOXA3_FOXC2	ENST00000490162.2|RP5-884M6.1|ENSG00000228742.5|RP5-884M6.1	ENST00000470135.1|RP5-884M6.1|ENSG00000228742.5|RP5-884M6.1
hg19_v2_chr1_-_207095324_207095357	0.119014	FOXA3_FOXC2	ENST00000530505.1|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3 	ENST00000367091.3|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3 	ENST00000442471.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr2_+_179318295_179318295	0.118595	FOXA3_FOXC2	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr2_+_58655461_58655492	0.107296	FOXA3_FOXC2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr1_-_149859466_149859521	0.10729	FOXA3_FOXC2	ENST00000331128.3|HIST2H2AB|ENSG00000184270.3|histone cluster 2, H2ab
hg19_v2_chr12_-_12714006_12714021	0.106909	FOXA3_FOXC2	ENST00000541207.1|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr1_-_1356628_1356678	0.103336	FOXA3_FOXC2	ENST00000442470.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65 	ENST00000537107.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65
hg19_v2_chr1_-_1356719_1356824	0.101044	FOXA3_FOXC2	ENST00000520296.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65
hg19_v2_chr12_-_12714025_12714064	0.0976644	FOXA3_FOXC2	ENST00000539940.1|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr4_+_76871883_76871883	0.0962304	FOXA3_FOXC2	ENST00000599764.1|AC110615.1|ENSG00000268788.1|Uncharacterized protein
hg19_v2_chr2_+_109223595_109223617	0.0920187	FOXA3_FOXC2	ENST00000410093.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr2_-_208030295_208030332	0.0895051	FOXA3_FOXC2	ENST00000458272.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr10_+_124739964_124739994	0.086374	FOXA3_FOXC2	ENST00000406217.2|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr5_+_95998746_95998764	0.0785042	FOXA3_FOXC2	ENST00000508608.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr16_-_87970122_87970122	0.0784438	FOXA3_FOXC2	ENST00000309893.2|CA5A|ENSG00000174990.3|carbonic anhydrase VA, mitochondrial
hg19_v2_chr2_-_87248975_87248975	0.0755715	FOXA3_FOXC2	ENST00000409310.2|PLGLB1|ENSG00000183281.10|plasminogen-like B1 	ENST00000355705.3|PLGLB1|ENSG00000183281.10|plasminogen-like B1
hg19_v2_chr17_-_19290483_19290553	0.0751319	FOXA3_FOXC2	ENST00000395592.2|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4 	ENST00000299610.4|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4
hg19_v2_chr5_-_137674000_137674044	0.0714482	FOXA3_FOXC2	ENST00000510119.1|CDC25C|ENSG00000158402.14|cell division cycle 25C 	ENST00000513970.1|CDC25C|ENSG00000158402.14|cell division cycle 25C
hg19_v2_chr11_+_65851443_65851457	0.071392	FOXA3_FOXC2	ENST00000533756.1|PACS1|ENSG00000175115.7|phosphofurin acidic cluster sorting protein 1
hg19_v2_chr12_+_96588279_96588323	0.071331	FOXA3_FOXC2	ENST00000552142.1|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2)
hg19_v2_chr11_+_8040739_8040815	0.0671389	FOXA3_FOXC2	ENST00000534099.1|TUB|ENSG00000166402.4|tubby bipartite transcription factor
hg19_v2_chr10_-_128210005_128210014	0.0663558	FOXA3_FOXC2	ENST00000284694.7|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000454341.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000432642.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000392694.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr2_+_196521903_196521986	0.0647945	FOXA3_FOXC2	ENST00000541054.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr7_+_151791074_151791083	0.0628863	FOXA3_FOXC2	ENST00000447796.1|GALNT11|ENSG00000178234.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
hg19_v2_chr9_-_20382446_20382493	0.062442	FOXA3_FOXC2	ENST00000380321.1|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
hg19_v2_chr8_+_142264664_142264664	0.0618865	FOXA3_FOXC2	ENST00000518520.1|RP11-10J21.3|ENSG00000254019.1|Uncharacterized protein
hg19_v2_chr6_-_13621126_13621126	0.0607053	FOXA3_FOXC2	ENST00000600057.1|AL441883.1|ENSG00000268059.1|Uncharacterized protein
hg19_v2_chr2_+_196521845_196521869	0.0594171	FOXA3_FOXC2	ENST00000359634.5|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10 	ENST00000412905.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr7_+_151791037_151791060	0.059257	FOXA3_FOXC2	ENST00000419245.1|GALNT11|ENSG00000178234.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
hg19_v2_chr2_-_175711924_175711944	0.0571529	FOXA3_FOXC2	ENST00000444573.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr6_+_37897735_37897837	0.0561062	FOXA3_FOXC2	ENST00000373389.5|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr3_-_193096600_193096632	0.055784	FOXA3_FOXC2	ENST00000446087.1|ATP13A5|ENSG00000187527.6|ATPase type 13A5 	ENST00000342358.4|ATP13A5|ENSG00000187527.6|ATPase type 13A5
hg19_v2_chr17_-_36358166_36358166	0.0548374	FOXA3_FOXC2	ENST00000537432.1|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr12_+_59989918_59989965	0.0541695	FOXA3_FOXC2	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr1_+_152486950_152486978	0.0530214	FOXA3_FOXC2	ENST00000368790.3|CRCT1|ENSG00000169509.5|cysteine-rich C-terminal 1
hg19_v2_chr1_+_239882842_239882850	0.0525909	FOXA3_FOXC2	ENST00000448020.1|CHRM3|ENSG00000133019.7|cholinergic receptor, muscarinic 3
hg19_v2_chr6_+_26251835_26251879	0.0522337	FOXA3_FOXC2	ENST00000356350.2|HIST1H2BH|ENSG00000197459.2|histone cluster 1, H2bh
hg19_v2_chr2_+_66918558_66918580	0.051441	FOXA3_FOXC2	ENST00000435389.1|AC007392.3|ENSG00000232046.2|AC007392.3	ENST00000428590.1|AC007392.3|ENSG00000232046.2|AC007392.3	ENST00000412944.1|AC007392.3|ENSG00000232046.2|AC007392.3
hg19_v2_chr2_-_192711968_192711981	0.0500174	FOXA3_FOXC2	ENST00000304141.4|SDPR|ENSG00000168497.4|serum deprivation response
hg19_v2_chr15_+_63188009_63188017	0.0489707	FOXA3_FOXC2	ENST00000557900.1|RP11-1069G10.2|ENSG00000259727.1|RP11-1069G10.2
hg19_v2_chr10_-_118032697_118032796	0.0477476	FOXA3_FOXC2	ENST00000439649.3|GFRA1|ENSG00000151892.10|GDNF family receptor alpha 1
hg19_v2_chr2_+_136343904_136343928	0.0454164	FOXA3_FOXC2	ENST00000436436.1|R3HDM1|ENSG00000048991.12|R3H domain containing 1
hg19_v2_chr2_-_175711978_175712109	0.0453828	FOXA3_FOXC2	ENST00000409089.2|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr15_+_76016293_76016321	0.0452086	FOXA3_FOXC2	ENST00000332145.2|ODF3L1|ENSG00000182950.2|outer dense fiber of sperm tails 3-like 1
hg19_v2_chr5_+_169011033_169011108	0.0422905	FOXA3_FOXC2	ENST00000513795.1|SPDL1|ENSG00000040275.12|spindle apparatus coiled-coil protein 1
hg19_v2_chr2_-_46844242_46844258	0.04222	FOXA3_FOXC2	ENST00000281382.6|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr9_+_129097520_129097531	0.0413792	FOXA3_FOXC2	ENST00000436593.3|MVB12B|ENSG00000196814.10|multivesicular body subunit 12B
hg19_v2_chr18_-_52626622_52626739	0.0413632	FOXA3_FOXC2	ENST00000591504.1|CCDC68|ENSG00000166510.9|coiled-coil domain containing 68
hg19_v2_chr5_+_74807886_74807926	0.0413109	FOXA3_FOXC2	ENST00000514296.1|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr1_+_150488205_150488251	0.0403342	FOXA3_FOXC2	ENST00000416894.1|LINC00568|ENSG00000228126.1|long intergenic non-protein coding RNA 568
hg19_v2_chr14_-_31926623_31926656	0.0395093	FOXA3_FOXC2	ENST00000356180.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr11_-_72852320_72852389	0.0387645	FOXA3_FOXC2	ENST00000422375.1|FCHSD2|ENSG00000137478.10|FCH and double SH3 domains 2
hg19_v2_chr7_+_151038850_151038915	0.0377205	FOXA3_FOXC2	ENST00000355851.4|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000566856.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000470229.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1
hg19_v2_chr15_-_59041768_59041950	0.0373394	FOXA3_FOXC2	ENST00000402627.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000396140.2|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000559053.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000561288.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10
hg19_v2_chr12_+_120740119_120740124	0.0372223	FOXA3_FOXC2	ENST00000536460.1|SIRT4|ENSG00000089163.4|sirtuin 4 	ENST00000202967.4|SIRT4|ENSG00000089163.4|sirtuin 4
hg19_v2_chr17_-_41322332_41322420	0.0371783	FOXA3_FOXC2	ENST00000590740.1|RP11-242D8.1|ENSG00000267002.1|RP11-242D8.1
hg19_v2_chr4_+_75174204_75174251	0.0371731	FOXA3_FOXC2	ENST00000332112.4|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000514968.1|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000503098.1|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000502358.1|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000509145.1|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000505212.1|EPGN|ENSG00000182585.5|epithelial mitogen
hg19_v2_chr2_-_165424973_165425010	0.0368683	FOXA3_FOXC2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr18_-_25616519_25616549	0.0364574	FOXA3_FOXC2	ENST00000399380.3|CDH2|ENSG00000170558.4|cadherin 2, type 1, N-cadherin (neuronal)
hg19_v2_chr17_+_37030127_37030161	0.0356557	FOXA3_FOXC2	ENST00000419929.1|LASP1|ENSG00000002834.13|LIM and SH3 protein 1
hg19_v2_chr2_+_169658928_169659113	0.0356326	FOXA3_FOXC2	ENST00000317647.7|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000445023.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking
hg19_v2_chr3_+_159570722_159570733	0.0355555	FOXA3_FOXC2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr7_+_134576317_134576374	0.0344734	FOXA3_FOXC2	ENST00000424922.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000495522.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr13_+_95364963_95364978	0.0344197	FOXA3_FOXC2	ENST00000438290.2|SOX21-AS1|ENSG00000227640.2|SOX21 antisense RNA 1 (head to head)
hg19_v2_chr20_+_9146969_9147005	0.0340932	FOXA3_FOXC2	ENST00000416836.1|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr5_+_133859996_133860046	0.0338397	FOXA3_FOXC2	ENST00000512386.1|PHF15|ENSG00000043143.16|jade family PHD finger 2
hg19_v2_chr2_+_169659121_169659157	0.0337721	FOXA3_FOXC2	ENST00000397206.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000397209.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000421711.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking
hg19_v2_chr17_-_77967433_77967526	0.0336827	FOXA3_FOXC2	ENST00000571872.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chr4_-_170679024_170679104	0.0333223	FOXA3_FOXC2	ENST00000393381.2|C4orf27|ENSG00000056050.6|chromosome 4 open reading frame 27
hg19_v2_chr2_-_175711133_175711158	0.0333135	FOXA3_FOXC2	ENST00000409597.1|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000413882.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr8_+_104384616_104384661	0.0327741	FOXA3_FOXC2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr12_-_48099754_48099769	0.032407	FOXA3_FOXC2	ENST00000380650.4|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr16_-_15474904_15474904	0.0323587	FOXA3_FOXC2	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr12_-_15865844_15865927	0.0322701	FOXA3_FOXC2	ENST00000543612.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr1_+_246729815_246729841	0.0321696	FOXA3_FOXC2	ENST00000366511.1|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr7_+_95115210_95115217	0.0313752	FOXA3_FOXC2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr5_+_147774275_147774340	0.0310924	FOXA3_FOXC2	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr20_+_9049742_9049765	0.0309069	FOXA3_FOXC2	ENST00000437503.1|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr3_+_155588375_155588512	0.0307351	FOXA3_FOXC2	ENST00000295920.7|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr3_+_136649311_136649360	0.0301675	FOXA3_FOXC2	ENST00000469404.1|NCK1|ENSG00000158092.2|NCK adaptor protein 1 	ENST00000467911.1|NCK1|ENSG00000158092.2|NCK adaptor protein 1
hg19_v2_chr3_-_196910721_196910729	0.0300286	FOXA3_FOXC2	ENST00000443183.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr3_-_107941230_107941417	0.0297047	FOXA3_FOXC2	ENST00000264538.3|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chr3_-_105588231_105588396	0.0296723	FOXA3_FOXC2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr12_-_21927736_21927768	0.0296596	FOXA3_FOXC2	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr1_-_150669604_150669643	0.0294493	FOXA3_FOXC2	ENST00000427665.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like 	ENST00000540514.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr2_+_175260514_175260536	0.0293478	FOXA3_FOXC2	ENST00000424069.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000427038.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr5_+_74807581_74807724	0.0293342	FOXA3_FOXC2	ENST00000241436.4|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa 	ENST00000352007.5|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr11_-_72070206_72070250	0.0291471	FOXA3_FOXC2	ENST00000544382.1|CLPB|ENSG00000162129.8|ClpB caseinolytic peptidase B homolog (E. coli)
hg19_v2_chr18_+_21033239_21033302	0.0291395	FOXA3_FOXC2	ENST00000581585.1|RIOK3|ENSG00000101782.10|RIO kinase 3 	ENST00000577501.1|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr3_-_196910477_196910524	0.0290748	FOXA3_FOXC2	ENST00000447466.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr3_+_69985734_69985754	0.0290465	FOXA3_FOXC2	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr12_-_53207842_53207907	0.0290246	FOXA3_FOXC2	ENST00000458244.2|KRT4|ENSG00000170477.8|keratin 4
hg19_v2_chr13_-_99667960_99668068	0.0289242	FOXA3_FOXC2	ENST00000448493.2|DOCK9|ENSG00000088387.13|dedicator of cytokinesis 9
hg19_v2_chr12_+_27849378_27849428	0.0286787	FOXA3_FOXC2	ENST00000310791.2|REP15|ENSG00000174236.2|RAB15 effector protein
hg19_v2_chr1_+_104159999_104160068	0.0284636	FOXA3_FOXC2	ENST00000414303.2|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic) 	ENST00000423678.1|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic)
hg19_v2_chr15_+_80364901_80364932	0.0277149	FOXA3_FOXC2	ENST00000560228.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559835.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559775.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558688.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560392.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560976.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558272.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558390.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr3_+_132316081_132316102	0.02719	FOXA3_FOXC2	ENST00000249887.2|ACKR4|ENSG00000129048.6|atypical chemokine receptor 4
hg19_v2_chr3_+_57882024_57882045	0.0269218	FOXA3_FOXC2	ENST00000494088.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr12_-_106480587_106480734	0.0267229	FOXA3_FOXC2	ENST00000548902.1|NUAK1|ENSG00000074590.9|NUAK family, SNF1-like kinase, 1
hg19_v2_chr13_+_73629107_73629148	0.0267006	FOXA3_FOXC2	ENST00000539231.1|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr7_+_134464376_134464413	0.0265799	FOXA3_FOXC2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr15_+_59664884_59664903	0.026527	FOXA3_FOXC2	ENST00000558348.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr3_-_71294304_71294332	0.0259093	FOXA3_FOXC2	ENST00000498215.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr14_+_20811766_20811801	0.0257281	FOXA3_FOXC2	ENST00000250416.5|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2 	ENST00000527915.1|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2
hg19_v2_chr16_-_3350614_3350614	0.0257269	FOXA3_FOXC2	ENST00000268674.2|TIGD7|ENSG00000140993.6|tigger transposable element derived 7
hg19_v2_chr2_-_65593784_65593817	0.0253147	FOXA3_FOXC2	ENST00000443619.2|SPRED2|ENSG00000198369.5|sprouty-related, EVH1 domain containing 2
hg19_v2_chr2_+_68592305_68592405	0.0251268	FOXA3_FOXC2	ENST00000234313.7|PLEK|ENSG00000115956.9|pleckstrin
hg19_v2_chr7_+_26438187_26438351	0.0251128	FOXA3_FOXC2	ENST00000439120.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000430548.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000421862.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000449537.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000420774.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000418758.2|AC004540.5|ENSG00000214870.4|AC004540.5
hg19_v2_chr1_-_154150651_154150691	0.0250101	FOXA3_FOXC2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr7_-_117512264_117512281	0.0243199	FOXA3_FOXC2	ENST00000454375.1|CTTNBP2|ENSG00000077063.6|cortactin binding protein 2
hg19_v2_chr16_-_48281305_48281419	0.0241889	FOXA3_FOXC2	ENST00000356608.2|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr8_-_80993010_80993073	0.0238562	FOXA3_FOXC2	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr1_+_246729724_246729794	0.0235168	FOXA3_FOXC2	ENST00000366513.4|CNST|ENSG00000162852.9|consortin, connexin sorting protein 	ENST00000366512.3|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr4_-_152149033_152149182	0.0234998	FOXA3_FOXC2	ENST00000514152.1|SH3D19|ENSG00000109686.12|SH3 domain containing 19
hg19_v2_chr14_+_20215587_20215587	0.0233494	FOXA3_FOXC2	ENST00000331723.1|OR4Q3|ENSG00000182652.1|olfactory receptor, family 4, subfamily Q, member 3
hg19_v2_chr22_+_21128167_21128167	0.023215	FOXA3_FOXC2	ENST00000215727.5|SERPIND1|ENSG00000099937.6|serpin peptidase inhibitor, clade D (heparin cofactor), member 1
hg19_v2_chr8_+_21777159_21777221	0.0231617	FOXA3_FOXC2	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr17_-_37764128_37764258	0.0230918	FOXA3_FOXC2	ENST00000302584.4|NEUROD2|ENSG00000171532.4|neuronal differentiation 2
hg19_v2_chr2_+_175260451_175260513	0.0230274	FOXA3_FOXC2	ENST00000458563.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000409673.3|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000272732.6|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000435964.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr10_-_126849588_126849614	0.0229252	FOXA3_FOXC2	ENST00000411419.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr1_+_61547405_61547534	0.0229191	FOXA3_FOXC2	ENST00000371189.4|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr1_-_169555709_169555730	0.0227885	FOXA3_FOXC2	ENST00000546081.1|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr1_-_43855444_43855478	0.0227516	FOXA3_FOXC2	ENST00000372455.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr1_-_149459549_149459549	0.0227238	FOXA3_FOXC2	ENST00000369175.3|FAM72C|ENSG00000203817.5|family with sequence similarity 72, member C
hg19_v2_chr8_+_19171128_19171182	0.0227013	FOXA3_FOXC2	ENST00000265807.3|SH2D4A|ENSG00000104611.7|SH2 domain containing 4A
hg19_v2_chr10_-_118032979_118033132	0.0225859	FOXA3_FOXC2	ENST00000355422.6|GFRA1|ENSG00000151892.10|GDNF family receptor alpha 1
hg19_v2_chr4_+_86396321_86396392	0.0224283	FOXA3_FOXC2	ENST00000503995.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr8_+_97597148_97597173	0.0223792	FOXA3_FOXC2	ENST00000521590.1|SDC2|ENSG00000169439.7|syndecan 2
hg19_v2_chr5_+_61708582_61708616	0.0222414	FOXA3_FOXC2	ENST00000325324.6|IPO11|ENSG00000086200.12|importin 11
hg19_v2_chr11_-_116708302_116708347	0.0221462	FOXA3_FOXC2	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr12_-_71551652_71551679	0.0218989	FOXA3_FOXC2	ENST00000546561.1|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr17_-_39684550_39684567	0.0218554	FOXA3_FOXC2	ENST00000455635.1|KRT19|ENSG00000171345.9|keratin 19 	ENST00000361566.3|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr14_+_58711539_58711627	0.0216478	FOXA3_FOXC2	ENST00000216455.4|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000412908.2|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000557508.1|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3
hg19_v2_chr15_+_69854027_69854062	0.0215276	FOXA3_FOXC2	ENST00000498938.2|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr1_+_114471972_114472000	0.0213068	FOXA3_FOXC2	ENST00000369559.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369554.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr3_-_139195350_139195370	0.0212961	FOXA3_FOXC2	ENST00000232217.2|RBP2|ENSG00000114113.2|retinol binding protein 2, cellular
hg19_v2_chr5_+_140710061_140710252	0.0210858	FOXA3_FOXC2	ENST00000517417.1|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1 	ENST00000378105.3|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1
hg19_v2_chr10_+_81466084_81466084	0.020885	FOXA3_FOXC2	ENST00000342531.2|NUTM2B|ENSG00000188199.6|NUT family member 2B
hg19_v2_chr12_-_48099773_48099844	0.0208499	FOXA3_FOXC2	ENST00000432584.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3 	ENST00000005386.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr14_-_24664540_24664690	0.0207128	FOXA3_FOXC2	ENST00000530563.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528895.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528669.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000532632.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1
hg19_v2_chr10_-_21186144_21186247	0.0206744	FOXA3_FOXC2	ENST00000377119.1|NEBL|ENSG00000078114.14|nebulette
hg19_v2_chr14_+_20811722_20811741	0.0204774	FOXA3_FOXC2	ENST00000429687.3|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2
hg19_v2_chr3_+_148447887_148447911	0.0204689	FOXA3_FOXC2	ENST00000475347.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000474935.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000461609.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr4_+_71588372_71588404	0.0204247	FOXA3_FOXC2	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr14_+_56127989_56128008	0.0203505	FOXA3_FOXC2	ENST00000555573.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr21_-_36259445_36259519	0.0202227	FOXA3_FOXC2	ENST00000399240.1|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr5_+_32531893_32531930	0.0201905	FOXA3_FOXC2	ENST00000512913.1|SUB1|ENSG00000113387.7|SUB1 homolog (S. cerevisiae)
hg19_v2_chr7_-_107643674_107643700	0.0199621	FOXA3_FOXC2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr4_+_169013666_169013697	0.0198198	FOXA3_FOXC2	ENST00000359299.3|ANXA10|ENSG00000109511.6|annexin A10
hg19_v2_chr2_-_21266935_21266951	0.0197832	FOXA3_FOXC2	ENST00000233242.1|APOB|ENSG00000084674.9|apolipoprotein B
hg19_v2_chr9_+_116343192_116343225	0.0197823	FOXA3_FOXC2	ENST00000471324.2|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr1_-_177939041_177939053	0.0195053	FOXA3_FOXC2	ENST00000308284.6|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr2_+_171640291_171640311	0.0194782	FOXA3_FOXC2	ENST00000409885.1|ERICH2|ENSG00000204334.7|glutamate-rich 2
hg19_v2_chrX_-_47863348_47863412	0.0193744	FOXA3_FOXC2	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr7_+_134430212_134430237	0.0192823	FOXA3_FOXC2	ENST00000436461.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr6_-_131211534_131211564	0.0192226	FOXA3_FOXC2	ENST00000456097.2|EPB41L2|ENSG00000079819.12|erythrocyte membrane protein band 4.1-like 2
hg19_v2_chr4_-_21950356_21950439	0.0191965	FOXA3_FOXC2	ENST00000447367.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4 	ENST00000382152.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr15_+_71185148_71185214	0.0191663	FOXA3_FOXC2	ENST00000443425.2|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000560755.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr8_+_101349823_101349862	0.0190572	FOXA3_FOXC2	ENST00000519566.1|KB-1991G8.1|ENSG00000253217.1|KB-1991G8.1
hg19_v2_chr4_+_79567362_79567380	0.0190456	FOXA3_FOXC2	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr7_+_77469439_77469497	0.0189048	FOXA3_FOXC2	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr16_+_4666475_4666516	0.0188371	FOXA3_FOXC2	ENST00000591895.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr20_+_9049682_9049710	0.0188046	FOXA3_FOXC2	ENST00000334005.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000378473.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr10_-_31288398_31288455	0.0187735	FOXA3_FOXC2	ENST00000538351.2|ZNF438|ENSG00000183621.11|zinc finger protein 438
hg19_v2_chr14_+_56127960_56127979	0.0187608	FOXA3_FOXC2	ENST00000553624.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr3_+_130569592_130569620	0.0186152	FOXA3_FOXC2	ENST00000533801.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr2_-_161056762_161056799	0.0185745	FOXA3_FOXC2	ENST00000428609.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409967.2|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr6_+_21666633_21666681	0.0184866	FOXA3_FOXC2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr3_-_116163830_116163855	0.0184716	FOXA3_FOXC2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr4_+_148653206_148653219	0.0183787	FOXA3_FOXC2	ENST00000336498.3|ARHGAP10|ENSG00000071205.7|Rho GTPase activating protein 10
hg19_v2_chr3_+_141106643_141106681	0.0183235	FOXA3_FOXC2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr2_-_21266816_21266849	0.0182686	FOXA3_FOXC2	ENST00000399256.4|APOB|ENSG00000084674.9|apolipoprotein B
hg19_v2_chr15_+_59665194_59665232	0.0180514	FOXA3_FOXC2	ENST00000560394.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr5_-_58571935_58571951	0.0176847	FOXA3_FOXC2	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr19_+_15160130_15160195	0.0175921	FOXA3_FOXC2	ENST00000427043.3|CASP14|ENSG00000105141.4|caspase 14, apoptosis-related cysteine peptidase
hg19_v2_chr1_+_114471809_114471855	0.0175466	FOXA3_FOXC2	ENST00000426820.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr2_+_136343820_136343897	0.0175449	FOXA3_FOXC2	ENST00000410054.1|R3HDM1|ENSG00000048991.12|R3H domain containing 1
hg19_v2_chr4_+_146403912_146403972	0.0175398	FOXA3_FOXC2	ENST00000507367.1|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000394092.2|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000515385.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr15_+_69857515_69857531	0.0173695	FOXA3_FOXC2	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr17_-_6947225_6947253	0.0173378	FOXA3_FOXC2	ENST00000574600.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11 	ENST00000308009.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11 	ENST00000447225.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11
hg19_v2_chr1_+_12806141_12806199	0.0172064	FOXA3_FOXC2	ENST00000288048.5|C1orf158|ENSG00000157330.5|chromosome 1 open reading frame 158
hg19_v2_chr2_+_28974489_28974521	0.017204	FOXA3_FOXC2	ENST00000455580.1|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr3_+_142315225_142315290	0.0170831	FOXA3_FOXC2	ENST00000457734.2|PLS1|ENSG00000120756.8|plastin 1 	ENST00000483373.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000475296.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000495744.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000476044.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000461644.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr7_+_134464414_134464429	0.0169037	FOXA3_FOXC2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr5_+_95998714_95998744	0.0168886	FOXA3_FOXC2	ENST00000506811.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000514055.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr3_+_142315294_142315315	0.0167798	FOXA3_FOXC2	ENST00000464320.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr5_+_65222500_65222601	0.0167506	FOXA3_FOXC2	ENST00000511297.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein 	ENST00000506030.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr2_+_88047606_88047606	0.0167327	FOXA3_FOXC2	ENST00000359481.4|PLGLB2|ENSG00000125551.14|plasminogen-like B2
hg19_v2_chr5_+_156712372_156712440	0.0167152	FOXA3_FOXC2	ENST00000541131.1|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2
hg19_v2_chr18_+_21032781_21032795	0.0167087	FOXA3_FOXC2	ENST00000339486.3|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr10_+_95848824_95848852	0.0165921	FOXA3_FOXC2	ENST00000371385.3|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1 	ENST00000371375.1|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1
hg19_v2_chr7_+_112063192_112063237	0.0164732	FOXA3_FOXC2	ENST00000005558.4|IFRD1|ENSG00000006652.9|interferon-related developmental regulator 1
hg19_v2_chr7_+_134576151_134576171	0.0164442	FOXA3_FOXC2	ENST00000393118.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr6_-_112575758_112575802	0.0162526	FOXA3_FOXC2	ENST00000431543.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000453937.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000368638.4|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000389463.4|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr11_-_102401469_102401488	0.0161312	FOXA3_FOXC2	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr5_+_61874562_61874685	0.0158849	FOXA3_FOXC2	ENST00000334994.5|LRRC70|ENSG00000186105.7|leucine rich repeat containing 70 	ENST00000409534.1|IPO11|ENSG00000086200.12|importin 11
hg19_v2_chr6_-_24666819_24666974	0.0157488	FOXA3_FOXC2	ENST00000341060.3|TDP2|ENSG00000111802.9|tyrosyl-DNA phosphodiesterase 2
hg19_v2_chr1_+_179851893_179851995	0.0157078	FOXA3_FOXC2	ENST00000531630.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr6_+_10528560_10528589	0.0156751	FOXA3_FOXC2	ENST00000379597.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr15_+_49462397_49462430	0.015354	FOXA3_FOXC2	ENST00000396509.2|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr17_-_1418972_1418995	0.0152194	FOXA3_FOXC2	ENST00000571274.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr4_+_165675197_165675216	0.0151367	FOXA3_FOXC2	ENST00000515485.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr13_+_52598827_52598827	0.0151229	FOXA3_FOXC2	ENST00000521776.2|UTP14C|ENSG00000253797.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v2_chr10_+_35484053_35484076	0.0148929	FOXA3_FOXC2	ENST00000487763.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000473940.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000488328.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000356917.5|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr17_+_7476136_7476160	0.0147243	FOXA3_FOXC2	ENST00000582169.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578754.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578495.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000293831.8|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000380512.5|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000585024.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000583802.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000577269.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000584784.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000582746.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1
hg19_v2_chr7_+_106809406_106809460	0.0147016	FOXA3_FOXC2	ENST00000468410.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000478930.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000464009.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000222574.4|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr6_+_108882069_108882087	0.0145444	FOXA3_FOXC2	ENST00000406360.1|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr10_+_71561630_71561644	0.0145165	FOXA3_FOXC2	ENST00000398974.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398971.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398968.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398966.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398964.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398969.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000356340.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398972.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398973.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr2_-_161056802_161056815	0.0145093	FOXA3_FOXC2	ENST00000283249.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409872.1|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr13_-_36429763_36429779	0.014296	FOXA3_FOXC2	ENST00000379893.1|DCLK1|ENSG00000133083.10|doublecortin-like kinase 1
hg19_v2_chr1_+_151739131_151739177	0.0142717	FOXA3_FOXC2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr2_-_225434538_225434545	0.0141867	FOXA3_FOXC2	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr2_-_86422523_86422595	0.0138998	FOXA3_FOXC2	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr3_-_45957534_45957655	0.0138562	FOXA3_FOXC2	ENST00000536047.1|LZTFL1|ENSG00000163818.12|leucine zipper transcription factor-like 1
hg19_v2_chr17_+_4613918_4614000	0.0138436	FOXA3_FOXC2	ENST00000574954.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000346341.2|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000572457.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000381488.6|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000412477.3|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000571428.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000575877.1|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr10_-_73848086_73848099	0.0137932	FOXA3_FOXC2	ENST00000536168.1|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
hg19_v2_chr9_-_70490107_70490246	0.0137589	FOXA3_FOXC2	ENST00000377395.4|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000429800.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000430059.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000377384.1|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000382405.3|CBWD5|ENSG00000147996.12|COBW domain containing 5
hg19_v2_chr2_-_145275828_145275981	0.0136888	FOXA3_FOXC2	ENST00000392861.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000409211.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr20_-_1974692_1974732	0.0135556	FOXA3_FOXC2	ENST00000217305.2|PDYN|ENSG00000101327.4|prodynorphin 	ENST00000539905.1|PDYN|ENSG00000101327.4|prodynorphin
hg19_v2_chr9_-_75567962_75567979	0.0133769	FOXA3_FOXC2	ENST00000297785.3|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1 	ENST00000376939.1|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1
hg19_v2_chr2_+_136343943_136344007	0.0133598	FOXA3_FOXC2	ENST00000409606.1|R3HDM1|ENSG00000048991.12|R3H domain containing 1
hg19_v2_chr4_+_184365744_184365797	0.0130213	FOXA3_FOXC2	ENST00000504169.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein 	ENST00000302350.4|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr2_-_182545603_182545603	0.012756	FOXA3_FOXC2	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr2_-_145275211_145275220	0.0127199	FOXA3_FOXC2	ENST00000462355.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr2_+_46844290_46844384	0.0126864	FOXA3_FOXC2	ENST00000238892.3|CRIPT|ENSG00000119878.5|cysteine-rich PDZ-binding protein
hg19_v2_chr1_+_172389821_172389833	0.0126201	FOXA3_FOXC2	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr19_-_51141196_51141302	0.0125534	FOXA3_FOXC2	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr19_-_15443318_15443373	0.0123546	FOXA3_FOXC2	ENST00000360016.5|BRD4|ENSG00000141867.13|bromodomain containing 4
hg19_v2_chr9_+_71986182_71986182	0.0122173	FOXA3_FOXC2	ENST00000303068.7|FAM189A2|ENSG00000135063.13|family with sequence similarity 189, member A2
hg19_v2_chr8_+_11666649_11666765	0.0122161	FOXA3_FOXC2	ENST00000528643.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525777.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr12_-_18243075_18243091	0.0121779	FOXA3_FOXC2	ENST00000536890.1|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr16_-_86542455_86542500	0.0120883	FOXA3_FOXC2	ENST00000595886.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000597578.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000593604.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA
hg19_v2_chr10_-_126849068_126849138	0.0119062	FOXA3_FOXC2	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr6_-_165989936_165989936	0.0117601	FOXA3_FOXC2	ENST00000354448.4|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr10_+_105315102_105315137	0.0116509	FOXA3_FOXC2	ENST00000369777.2|NEURL|ENSG00000107954.6|neuralized E3 ubiquitin protein ligase 1
hg19_v2_chr12_+_96588368_96588394	0.0115926	FOXA3_FOXC2	ENST00000547860.1|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2)
hg19_v2_chr3_+_158991025_158991083	0.0109261	FOXA3_FOXC2	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr16_+_19619083_19619132	0.0108503	FOXA3_FOXC2	ENST00000538552.1|C16orf62|ENSG00000103544.10|chromosome 16 open reading frame 62
hg19_v2_chr9_+_112852477_112852514	0.0107466	FOXA3_FOXC2	ENST00000480388.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr21_-_32931290_32931341	0.0106772	FOXA3_FOXC2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr12_+_48099858_48099877	0.0106257	FOXA3_FOXC2	ENST00000547799.1|RP1-197B17.3|ENSG00000257433.1|RP1-197B17.3
hg19_v2_chr17_+_61151306_61151320	0.0105252	FOXA3_FOXC2	ENST00000580068.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000580466.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr3_+_171561127_171561306	0.0105189	FOXA3_FOXC2	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chr3_+_130569429_130569479	0.0103595	FOXA3_FOXC2	ENST00000505330.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000504381.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000507488.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000393221.4|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr10_+_123923105_123923160	0.010288	FOXA3_FOXC2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chrX_-_20236970_20237027	0.0102832	FOXA3_FOXC2	ENST00000379548.4|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chrX_+_24167828_24167907	0.0102161	FOXA3_FOXC2	ENST00000379188.3|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000419690.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000379177.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000304543.5|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr7_-_111424462_111424496	0.0102092	FOXA3_FOXC2	ENST00000437129.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr1_+_179851410_179851447	0.0100557	FOXA3_FOXC2	ENST00000271583.3|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1 	ENST00000606911.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr5_-_59481406_59481425	0.00980701	FOXA3_FOXC2	ENST00000546160.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr21_+_17792672_17792775	0.00979401	FOXA3_FOXC2	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr17_-_44270133_44270207	0.009726	FOXA3_FOXC2	ENST00000262419.6|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1 	ENST00000393476.3|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chr12_-_92536433_92536459	0.00971658	FOXA3_FOXC2	ENST00000551563.2|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000546975.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000549802.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79
hg19_v2_chr5_+_95998673_95998713	0.00964452	FOXA3_FOXC2	ENST00000514845.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr21_-_38445011_38445200	0.00957161	FOXA3_FOXC2	ENST00000464265.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P 	ENST00000399102.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P
hg19_v2_chr8_+_19171196_19171216	0.00952778	FOXA3_FOXC2	ENST00000518040.1|SH2D4A|ENSG00000104611.7|SH2 domain containing 4A
hg19_v2_chrX_+_23352133_23352229	0.00949385	FOXA3_FOXC2	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr5_-_98262240_98262240	0.00934016	FOXA3_FOXC2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr1_+_179851999_179852024	0.00931805	FOXA3_FOXC2	ENST00000527391.1|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr15_-_76352069_76352145	0.00921151	FOXA3_FOXC2	ENST00000305435.10|NRG4|ENSG00000169752.12|neuregulin 4 	ENST00000563910.1|NRG4|ENSG00000169752.12|neuregulin 4
hg19_v2_chr7_-_121784285_121784350	0.00918915	FOXA3_FOXC2	ENST00000417368.2|AASS|ENSG00000008311.10|aminoadipate-semialdehyde synthase
hg19_v2_chrX_+_24167746_24167811	0.00904111	FOXA3_FOXC2	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr12_-_122018346_122018389	0.00900511	FOXA3_FOXC2	ENST00000377069.4|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B
hg19_v2_chr15_-_50411412_50411437	0.00883114	FOXA3_FOXC2	ENST00000284509.6|ATP8B4|ENSG00000104043.10|ATPase, class I, type 8B, member 4
hg19_v2_chr8_+_102064237_102064282	0.00877949	FOXA3_FOXC2	ENST00000514926.1|RP11-302J23.1|ENSG00000248599.1|RP11-302J23.1
hg19_v2_chr12_-_102591604_102591623	0.00873379	FOXA3_FOXC2	ENST00000329406.4|PMCH|ENSG00000183395.4|pro-melanin-concentrating hormone
hg19_v2_chr2_-_145275228_145275464	0.00868643	FOXA3_FOXC2	ENST00000427902.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000409487.3|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000470879.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000435831.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr1_+_200011711_200011752	0.00858326	FOXA3_FOXC2	ENST00000544748.1|NR5A2|ENSG00000116833.9|nuclear receptor subfamily 5, group A, member 2
hg19_v2_chr4_-_186456652_186456668	0.00838565	FOXA3_FOXC2	ENST00000284767.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3 	ENST00000284770.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr2_-_175260368_175260450	0.00835776	FOXA3_FOXC2	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr10_+_80008505_80008616	0.00825592	FOXA3_FOXC2	ENST00000434974.1|LINC00856|ENSG00000230417.6|long intergenic non-protein coding RNA 856 	ENST00000423770.1|LINC00856|ENSG00000230417.6|long intergenic non-protein coding RNA 856 	ENST00000432742.1|LINC00856|ENSG00000230417.6|long intergenic non-protein coding RNA 856
hg19_v2_chr14_+_74551650_74551680	0.00823827	FOXA3_FOXC2	ENST00000554938.1|LIN52|ENSG00000205659.6|lin-52 homolog (C. elegans)
hg19_v2_chr6_+_47666275_47666296	0.00817659	FOXA3_FOXC2	ENST00000327753.3|GPR115|ENSG00000153294.7|G protein-coupled receptor 115 	ENST00000283303.2|GPR115|ENSG00000153294.7|G protein-coupled receptor 115
hg19_v2_chr3_+_137728842_137728952	0.0081481	FOXA3_FOXC2	ENST00000183605.5|CLDN18|ENSG00000066405.8|claudin 18
hg19_v2_chr7_+_123241908_123241927	0.00799396	FOXA3_FOXC2	ENST00000434204.1|ASB15|ENSG00000146809.8|ankyrin repeat and SOCS box containing 15 	ENST00000437535.1|ASB15|ENSG00000146809.8|ankyrin repeat and SOCS box containing 15 	ENST00000451215.1|ASB15|ENSG00000146809.8|ankyrin repeat and SOCS box containing 15
hg19_v2_chr7_-_107643567_107643657	0.00793246	FOXA3_FOXC2	ENST00000393559.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000439976.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000393560.1|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chrX_+_135730373_135730399	0.00786472	FOXA3_FOXC2	ENST00000370628.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr2_+_162165038_162165111	0.00784804	FOXA3_FOXC2	ENST00000437630.1|PSMD14|ENSG00000115233.7|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
hg19_v2_chr8_-_23261589_23261753	0.00773098	FOXA3_FOXC2	ENST00000524168.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000523833.2|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000519243.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000389131.3|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chr4_+_71587669_71587752	0.00772378	FOXA3_FOXC2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr21_-_15583165_15583170	0.00750856	FOXA3_FOXC2	ENST00000536861.1|LIPI|ENSG00000188992.7|lipase, member I
hg19_v2_chr1_-_150602035_150602095	0.00740747	FOXA3_FOXC2	ENST00000503241.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369016.4|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000339643.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000271690.8|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000356527.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000362052.7|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000503345.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369014.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369009.3|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr2_-_106054952_106054977	0.00724488	FOXA3_FOXC2	ENST00000336660.5|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393352.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000607522.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr10_+_124320156_124320181	0.00724077	FOXA3_FOXC2	ENST00000338354.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000344338.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000330163.4|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368909.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368955.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368956.2|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr7_-_111424506_111424539	0.00719834	FOXA3_FOXC2	ENST00000450156.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000494651.2|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr1_+_179851823_179851846	0.00704967	FOXA3_FOXC2	ENST00000435319.4|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr16_+_67381263_67381284	0.0069892	FOXA3_FOXC2	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr18_-_3874271_3874337	0.00696672	FOXA3_FOXC2	ENST00000400149.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400155.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400150.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr5_-_115872124_115872139	0.0068848	FOXA3_FOXC2	ENST00000515009.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr4_+_57138437_57138570	0.00687979	FOXA3_FOXC2	ENST00000504228.1|KIAA1211|ENSG00000109265.8|KIAA1211 	ENST00000541073.1|KIAA1211|ENSG00000109265.8|KIAA1211
hg19_v2_chr4_-_11431389_11431389	0.00682793	FOXA3_FOXC2	ENST00000002596.5|HS3ST1|ENSG00000002587.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 1
hg19_v2_chr8_+_67579807_67579887	0.00666859	FOXA3_FOXC2	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr4_+_166794383_166794500	0.00651911	FOXA3_FOXC2	ENST00000061240.2|TLL1|ENSG00000038295.3|tolloid-like 1 	ENST00000507499.1|TLL1|ENSG00000038295.3|tolloid-like 1
hg19_v2_chr10_+_124320195_124320216	0.00640974	FOXA3_FOXC2	ENST00000359586.6|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr4_-_103266626_103266647	0.00633253	FOXA3_FOXC2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr14_+_52164820_52164841	0.00625758	FOXA3_FOXC2	ENST00000554167.1|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr4_-_74486347_74486348	0.00618269	FOXA3_FOXC2	ENST00000342081.3|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6
hg19_v2_chr9_-_37034028_37034157	0.00614566	FOXA3_FOXC2	ENST00000520281.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000446742.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000522003.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523145.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000414447.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377847.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377853.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377852.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523241.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000520154.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000358127.4|PAX5|ENSG00000196092.8|paired box 5
hg19_v2_chr11_-_82708519_82708523	0.00605408	FOXA3_FOXC2	ENST00000534301.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr2_-_188312971_188312987	0.00592833	FOXA3_FOXC2	ENST00000410068.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000447403.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000410102.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like
hg19_v2_chr4_-_186456766_186456794	0.0057511	FOXA3_FOXC2	ENST00000284771.6|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr4_+_172734548_172734654	0.00558604	FOXA3_FOXC2	ENST00000506823.1|GALNTL6|ENSG00000174473.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
hg19_v2_chr8_-_30002179_30002202	0.00554494	FOXA3_FOXC2	ENST00000320542.3|MBOAT4|ENSG00000177669.3|membrane bound O-acyltransferase domain containing 4
hg19_v2_chr3_+_135741576_135741601	0.00553517	FOXA3_FOXC2	ENST00000334546.2|PPP2R3A|ENSG00000073711.6|protein phosphatase 2, regulatory subunit B'', alpha
hg19_v2_chr2_-_172290482_172290596	0.00549988	FOXA3_FOXC2	ENST00000442541.1|METTL8|ENSG00000123600.14|methyltransferase like 8 	ENST00000392599.2|METTL8|ENSG00000123600.14|methyltransferase like 8 	ENST00000375258.4|METTL8|ENSG00000123600.14|methyltransferase like 8
hg19_v2_chr6_-_122792919_122792970	0.00534388	FOXA3_FOXC2	ENST00000339697.4|SERINC1|ENSG00000111897.6|serine incorporator 1
hg19_v2_chr1_-_179851611_179851730	0.00534367	FOXA3_FOXC2	ENST00000610272.1|RP11-533E19.7|ENSG00000272906.1|RP11-533E19.7
hg19_v2_chr11_-_85397167_85397320	0.00529882	FOXA3_FOXC2	ENST00000316398.3|CCDC89|ENSG00000179071.3|coiled-coil domain containing 89
hg19_v2_chr4_+_79567314_79567348	0.00525895	FOXA3_FOXC2	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr3_+_69985792_69985874	0.00519355	FOXA3_FOXC2	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr6_+_44355257_44355315	0.00517266	FOXA3_FOXC2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr6_+_122793058_122793087	0.00510646	FOXA3_FOXC2	ENST00000392491.2|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta
hg19_v2_chr4_-_174256276_174256303	0.00491493	FOXA3_FOXC2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr14_-_99737822_99737861	0.00490955	FOXA3_FOXC2	ENST00000345514.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein) 	ENST00000443726.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr6_-_112575687_112575755	0.00482165	FOXA3_FOXC2	ENST00000521398.1|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000424408.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000243219.3|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr12_-_18243119_18243133	0.00477821	FOXA3_FOXC2	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr2_+_196522032_196522173	0.00476125	FOXA3_FOXC2	ENST00000418005.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr10_-_46030787_46030824	0.00466017	FOXA3_FOXC2	ENST00000395769.2|MARCH8|ENSG00000165406.11|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
hg19_v2_chr6_+_125524785_125524861	0.00456019	FOXA3_FOXC2	ENST00000392482.2|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr7_+_86273218_86273242	0.00451523	FOXA3_FOXC2	ENST00000361669.2|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr5_+_135468516_135468621	0.00451315	FOXA3_FOXC2	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr1_+_84609944_84609964	0.00443748	FOXA3_FOXC2	ENST00000370685.3|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr17_-_38020392_38020477	0.00437878	FOXA3_FOXC2	ENST00000346872.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000439167.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377945.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000394189.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377944.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377958.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000535189.1|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377952.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos)
hg19_v2_chrX_-_54069576_54069627	0.00409628	FOXA3_FOXC2	ENST00000445025.1|PHF8|ENSG00000172943.14|PHD finger protein 8 	ENST00000322659.8|PHF8|ENSG00000172943.14|PHD finger protein 8
hg19_v2_chr1_+_179851176_179851197	0.00407312	FOXA3_FOXC2	ENST00000528443.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr15_+_49462434_49462488	0.00384027	FOXA3_FOXC2	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr1_-_150669500_150669602	0.00383497	FOXA3_FOXC2	ENST00000271732.3|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr11_-_119247004_119247066	0.00382232	FOXA3_FOXC2	ENST00000531070.1|USP2|ENSG00000036672.11|ubiquitin specific peptidase 2
hg19_v2_chr3_+_189349162_189349305	0.00375175	FOXA3_FOXC2	ENST00000264731.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000382063.4|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000418709.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000320472.5|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392460.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000440651.2|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr6_-_112575912_112575931	0.00365836	FOXA3_FOXC2	ENST00000522006.1|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000230538.7|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000519932.1|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr1_+_66820058_66820083	0.00363696	FOXA3_FOXC2	ENST00000480109.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr3_-_186080012_186080030	0.00362294	FOXA3_FOXC2	ENST00000544847.1|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa 	ENST00000265022.3|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa
hg19_v2_chr17_-_39041479_39041501	0.00359758	FOXA3_FOXC2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr1_+_87797351_87797441	0.0031939	FOXA3_FOXC2	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr10_+_70847852_70847874	0.00316385	FOXA3_FOXC2	ENST00000242465.3|SRGN|ENSG00000122862.4|serglycin
hg19_v2_chr16_+_20775358_20775386	0.00314384	FOXA3_FOXC2	ENST00000440284.2|ACSM3|ENSG00000005187.7|acyl-CoA synthetase medium-chain family member 3
hg19_v2_chr7_+_116654935_116654949	0.00302034	FOXA3_FOXC2	ENST00000432298.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000422922.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr16_+_67381289_67381306	0.00287613	FOXA3_FOXC2	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr15_-_59665062_59665099	0.00273874	FOXA3_FOXC2	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr9_+_103340354_103340367	0.00270483	FOXA3_FOXC2	ENST00000307584.5|MURC|ENSG00000170681.6|muscle-related coiled-coil protein
hg19_v2_chr12_-_45315625_45315636	0.00260708	FOXA3_FOXC2	ENST00000552993.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr6_+_146350267_146350419	0.00253649	FOXA3_FOXC2	ENST00000355289.4|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000282753.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr5_-_159846399_159846412	0.00238659	FOXA3_FOXC2	ENST00000297151.4|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae)
hg19_v2_chr6_+_146350622_146350749	0.00232803	FOXA3_FOXC2	ENST00000507907.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr4_+_165675269_165675289	0.00231646	FOXA3_FOXC2	ENST00000507311.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chrX_+_135730297_135730352	0.00212408	FOXA3_FOXC2	ENST00000370629.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr5_+_125706998_125707018	0.00206383	FOXA3_FOXC2	ENST00000506445.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr3_-_71114066_71114114	0.00199663	FOXA3_FOXC2	ENST00000485326.2|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr6_-_43596899_43596915	0.00190833	FOXA3_FOXC2	ENST00000307126.5|GTPBP2|ENSG00000172432.14|GTP binding protein 2 	ENST00000452781.1|GTPBP2|ENSG00000172432.14|GTP binding protein 2
hg19_v2_chr1_+_159141397_159141549	0.00177137	FOXA3_FOXC2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chrX_-_20237059_20237081	0.00172083	FOXA3_FOXC2	ENST00000457145.1|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr8_-_28243934_28243993	0.00153692	FOXA3_FOXC2	ENST00000521185.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000520290.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000344423.5|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chr1_-_8075693_8075757	0.00146255	FOXA3_FOXC2	ENST00000467067.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1
hg19_v2_chr1_-_201096312_201096312	0.00129631	FOXA3_FOXC2	ENST00000449188.2|ASCL5|ENSG00000232237.2|achaete-scute family bHLH transcription factor 5
hg19_v2_chr9_+_70856397_70856397	0.00127138	FOXA3_FOXC2	ENST00000360171.6|CBWD3|ENSG00000196873.11|COBW domain containing 3
hg19_v2_chr1_-_169555779_169555826	0.00125097	FOXA3_FOXC2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr2_-_39456673_39456673	0.0012015	FOXA3_FOXC2	ENST00000378803.1|CDKL4|ENSG00000205111.4|cyclin-dependent kinase-like 4 	ENST00000395035.3|CDKL4|ENSG00000205111.4|cyclin-dependent kinase-like 4
hg19_v2_chr5_-_36242119_36242381	0.00113216	FOXA3_FOXC2	ENST00000511088.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000282512.3|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000506945.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial
hg19_v2_chr3_+_119316689_119316710	0.00111983	FOXA3_FOXC2	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr1_-_167522982_167523017	0.00106348	FOXA3_FOXC2	ENST00000370509.4|CREG1|ENSG00000143162.7|cellular repressor of E1A-stimulated genes 1
hg19_v2_chr10_-_74283694_74283749	0.00095212	FOXA3_FOXC2	ENST00000398763.4|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1 	ENST00000418483.2|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1 	ENST00000489666.2|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1
hg19_v2_chr2_-_46844159_46844209	0.000899789	FOXA3_FOXC2	ENST00000474980.1|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F 	ENST00000306465.4|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr3_-_133969673_133969735	0.000833287	FOXA3_FOXC2	ENST00000427044.2|RYK|ENSG00000163785.8|receptor-like tyrosine kinase
hg19_v2_chr2_+_28974668_28974729	0.000774018	FOXA3_FOXC2	ENST00000296122.6|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000395366.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr15_-_65321943_65321984	0.00076625	FOXA3_FOXC2	ENST00000220058.4|MTFMT|ENSG00000103707.5|mitochondrial methionyl-tRNA formyltransferase
hg19_v2_chr6_+_146348810_146348918	0.000741784	FOXA3_FOXC2	ENST00000492807.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr14_+_56585048_56585150	0.000723502	FOXA3_FOXC2	ENST00000267460.4|PELI2|ENSG00000139946.5|pellino E3 ubiquitin protein ligase family member 2
hg19_v2_chr18_+_68002675_68002675	0.000715291	FOXA3_FOXC2	ENST00000584919.1|RP11-41O4.1|ENSG00000266258.1|Uncharacterized protein
hg19_v2_chr19_-_36019123_36019253	0.000606773	FOXA3_FOXC2	ENST00000588674.1|SBSN|ENSG00000189001.6|suprabasin 	ENST00000452271.2|SBSN|ENSG00000189001.6|suprabasin 	ENST00000518157.1|SBSN|ENSG00000189001.6|suprabasin
hg19_v2_chr6_+_54172653_54172764	0.0006002	FOXA3_FOXC2	ENST00000370869.3|TINAG|ENSG00000137251.11|tubulointerstitial nephritis antigen
hg19_v2_chr14_+_51706886_51707006	0.000478168	FOXA3_FOXC2	ENST00000457354.2|TMX1|ENSG00000139921.8|thioredoxin-related transmembrane protein 1
hg19_v2_chr4_+_184826418_184826522	0.000462335	FOXA3_FOXC2	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chr8_+_92261516_92261555	0.000423511	FOXA3_FOXC2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr8_+_52730143_52730143	0.000333761	FOXA3_FOXC2	ENST00000415643.1|AC090186.1|ENSG00000232941.1|Uncharacterized protein
hg19_v2_chr1_-_246357029_246357043	0.000326912	FOXA3_FOXC2	ENST00000391836.2|SMYD3|ENSG00000185420.14|SET and MYND domain containing 3
hg19_v2_chr5_+_179921430_179921461	0.00025638	FOXA3_FOXC2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr10_-_71176623_71176638	0.000256022	FOXA3_FOXC2	ENST00000373306.4|TACR2|ENSG00000075073.10|tachykinin receptor 2
hg19_v2_chr3_-_168864427_168864464	8.3572e-05	FOXA3_FOXC2	ENST00000468789.1|MECOM|ENSG00000085276.13|MDS1 and EVI1 complex locus
