hg19_v2_chr5_+_137801160_137801179	0.35476	CAGUAGU	ENST00000239938.4|EGR1|ENSG00000120738.7|early growth response 1
hg19_v2_chr4_+_103790120_103790186	0.267569	CAGUAGU	ENST00000273986.4|CISD2|ENSG00000145354.5|CDGSH iron sulfur domain 2
hg19_v2_chr3_+_110790590_110790603	0.230057	CAGUAGU	ENST00000485303.1|PVRL3|ENSG00000177707.6|poliovirus receptor-related 3
hg19_v2_chr6_+_47445467_47445536	0.216753	CAGUAGU	ENST00000359314.5|CD2AP|ENSG00000198087.7|CD2-associated protein
hg19_v2_chr10_+_5454505_5454540	0.209207	CAGUAGU	ENST00000355029.4|NET1|ENSG00000173848.14|neuroepithelial cell transforming 1
hg19_v2_chr2_+_110371905_110371950	0.201216	CAGUAGU	ENST00000356454.3|SOWAHC|ENSG00000198142.3|sosondowah ankyrin repeat domain family member C
hg19_v2_chr13_+_48877895_48877929	0.183973	CAGUAGU	ENST00000267163.4|RB1|ENSG00000139687.9|retinoblastoma 1
hg19_v2_chr22_+_25960786_25960854	0.183618	CAGUAGU	ENST00000324198.6|ADRBK2|ENSG00000100077.10|adrenergic, beta, receptor kinase 2
hg19_v2_chr14_-_52535712_52535753	0.178528	CAGUAGU	ENST00000216286.5|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen) 	ENST00000541773.1|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen)
hg19_v2_chr15_+_85523671_85523747	0.167631	CAGUAGU	ENST00000310298.4|PDE8A|ENSG00000073417.10|phosphodiesterase 8A 	ENST00000557957.1|PDE8A|ENSG00000073417.10|phosphodiesterase 8A
hg19_v2_chrX_+_103411189_103411301	0.163351	CAGUAGU	ENST00000493442.1|FAM199X|ENSG00000123575.8|family with sequence similarity 199, X-linked
hg19_v2_chr1_+_162602244_162602289	0.15958	CAGUAGU	ENST00000367922.3|DDR2|ENSG00000162733.12|discoidin domain receptor tyrosine kinase 2 	ENST00000367921.3|DDR2|ENSG00000162733.12|discoidin domain receptor tyrosine kinase 2
hg19_v2_chr8_+_26149007_26149061	0.15358	CAGUAGU	ENST00000380737.3|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha 	ENST00000524169.1|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha
hg19_v2_chr8_-_119634141_119634234	0.150254	CAGUAGU	ENST00000409003.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526328.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000314727.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526765.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12
hg19_v2_chr20_-_14318248_14318264	0.150166	CAGUAGU	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr2_-_106810783_106810795	0.149243	CAGUAGU	ENST00000283148.7|UXS1|ENSG00000115652.10|UDP-glucuronate decarboxylase 1
hg19_v2_chr21_-_46238034_46238051	0.145412	CAGUAGU	ENST00000332859.6|SUMO3|ENSG00000184900.11|small ubiquitin-like modifier 3
hg19_v2_chr6_-_139695757_139695795	0.144369	CAGUAGU	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr1_+_7831323_7831414	0.144107	CAGUAGU	ENST00000054666.6|VAMP3|ENSG00000049245.8|vesicle-associated membrane protein 3
hg19_v2_chr15_-_49447835_49447858	0.14373	CAGUAGU	ENST00000388901.5|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000299259.6|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chr8_-_124286735_124286773	0.143443	CAGUAGU	ENST00000395571.3|ZHX1|ENSG00000165156.10|zinc fingers and homeoboxes 1
hg19_v2_chrX_-_130037198_130037234	0.141768	CAGUAGU	ENST00000370935.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000338144.3|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000394363.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2
hg19_v2_chr7_+_116139424_116139444	0.141659	CAGUAGU	ENST00000222693.4|CAV2|ENSG00000105971.10|caveolin 2
hg19_v2_chr1_-_184723942_184724047	0.139961	CAGUAGU	ENST00000318130.8|EDEM3|ENSG00000116406.14|ER degradation enhancer, mannosidase alpha-like 3
hg19_v2_chr2_-_224903995_224904036	0.139514	CAGUAGU	ENST00000409304.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000454956.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000258405.4|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v2_chr15_+_49715293_49715448	0.138602	CAGUAGU	ENST00000267843.4|FGF7|ENSG00000140285.5|fibroblast growth factor 7 	ENST00000560270.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr14_+_56046914_56046973	0.13859	CAGUAGU	ENST00000413890.2|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor) 	ENST00000395309.3|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor) 	ENST00000554567.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor) 	ENST00000555498.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr10_+_92980517_92980550	0.137537	CAGUAGU	ENST00000336126.5|PCGF5|ENSG00000180628.10|polycomb group ring finger 5
hg19_v2_chr11_+_35160709_35160853	0.136678	CAGUAGU	ENST00000415148.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000433354.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000449691.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000437706.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000360158.4|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000428726.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000526669.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000433892.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000278386.6|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000434472.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000352818.4|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000442151.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr1_-_46152174_46152302	0.134927	CAGUAGU	ENST00000290795.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1 	ENST00000355105.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1
hg19_v2_chr5_-_121413974_121413986	0.134787	CAGUAGU	ENST00000231004.4|LOX|ENSG00000113083.8|lysyl oxidase
hg19_v2_chr12_-_48099773_48099844	0.133817	CAGUAGU	ENST00000432584.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3 	ENST00000005386.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr17_+_30264014_30264086	0.132639	CAGUAGU	ENST00000322652.5|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit 	ENST00000580398.1|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit
hg19_v2_chrX_+_16804544_16804613	0.132109	CAGUAGU	ENST00000380122.5|TXLNG|ENSG00000086712.8|taxilin gamma 	ENST00000398155.4|TXLNG|ENSG00000086712.8|taxilin gamma
hg19_v2_chr12_-_80084862_80084884	0.131027	CAGUAGU	ENST00000328827.4|PAWR|ENSG00000177425.6|PRKC, apoptosis, WT1, regulator
hg19_v2_chr17_+_30813576_30813637	0.130004	CAGUAGU	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr9_+_33265011_33265059	0.127164	CAGUAGU	ENST00000419016.2|CHMP5|ENSG00000086065.9|charged multivesicular body protein 5
hg19_v2_chr6_-_105307711_105307800	0.124132	CAGUAGU	ENST00000519645.1|HACE1|ENSG00000085382.7|HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 	ENST00000262903.4|HACE1|ENSG00000085382.7|HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 	ENST00000369125.2|HACE1|ENSG00000085382.7|HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
hg19_v2_chr2_+_196521458_196521491	0.124055	CAGUAGU	ENST00000409086.3|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr8_-_130951940_130952118	0.123882	CAGUAGU	ENST00000522250.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000522941.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000522746.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000520204.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519070.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000520254.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519824.2|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519540.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B
hg19_v2_chr20_-_52210368_52210384	0.122378	CAGUAGU	ENST00000371471.2|ZNF217|ENSG00000171940.9|zinc finger protein 217
hg19_v2_chr4_+_26862400_26862416	0.120957	CAGUAGU	ENST00000467011.1|STIM2|ENSG00000109689.10|stromal interaction molecule 2 	ENST00000412829.2|STIM2|ENSG00000109689.10|stromal interaction molecule 2
hg19_v2_chr10_-_88281494_88281572	0.119758	CAGUAGU	ENST00000298767.5|WAPAL|ENSG00000062650.13|wings apart-like homolog (Drosophila)
hg19_v2_chr7_-_95064264_95064510	0.116996	CAGUAGU	ENST00000536183.1|PON2|ENSG00000105854.8|paraoxonase 2 	ENST00000433091.2|PON2|ENSG00000105854.8|paraoxonase 2 	ENST00000222572.3|PON2|ENSG00000105854.8|paraoxonase 2
hg19_v2_chrX_-_8700171_8700227	0.116424	CAGUAGU	ENST00000262648.3|KAL1|ENSG00000011201.6|Kallmann syndrome 1 sequence
hg19_v2_chr16_+_81478775_81478895	0.114938	CAGUAGU	ENST00000537098.3|CMIP|ENSG00000153815.12|c-Maf inducing protein
hg19_v2_chr20_+_8112824_8112925	0.114667	CAGUAGU	ENST00000378641.3|PLCB1|ENSG00000182621.12|phospholipase C, beta 1 (phosphoinositide-specific)
hg19_v2_chr10_+_60144782_60144887	0.112498	CAGUAGU	ENST00000487519.1|TFAM|ENSG00000108064.6|transcription factor A, mitochondrial
hg19_v2_chr10_-_28571015_28571067	0.112199	CAGUAGU	ENST00000375719.3|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 	ENST00000375732.1|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr2_+_45878790_45878913	0.111433	CAGUAGU	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chr15_+_33010175_33010211	0.109452	CAGUAGU	ENST00000300177.4|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist 	ENST00000560677.1|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist 	ENST00000560830.1|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist
hg19_v2_chr4_+_123747834_123747863	0.109164	CAGUAGU	ENST00000264498.3|FGF2|ENSG00000138685.8|fibroblast growth factor 2 (basic)
hg19_v2_chr2_+_48010221_48010307	0.100422	CAGUAGU	ENST00000234420.5|MSH6|ENSG00000116062.10|mutS homolog 6
hg19_v2_chr6_-_90062543_90062567	0.100023	CAGUAGU	ENST00000435041.2|UBE2J1|ENSG00000198833.6|ubiquitin-conjugating enzyme E2, J1
hg19_v2_chr2_+_42396472_42396563	0.0972983	CAGUAGU	ENST00000318522.5|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4 	ENST00000402711.2|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4
hg19_v2_chr2_+_173292301_173292332	0.095759	CAGUAGU	ENST00000264106.6|ITGA6|ENSG00000091409.10|integrin, alpha 6 	ENST00000375221.2|ITGA6|ENSG00000091409.10|integrin, alpha 6 	ENST00000343713.4|ITGA6|ENSG00000091409.10|integrin, alpha 6
hg19_v2_chr14_-_53619816_53620056	0.0954953	CAGUAGU	ENST00000323669.5|DDHD1|ENSG00000100523.10|DDHD domain containing 1 	ENST00000395606.1|DDHD1|ENSG00000100523.10|DDHD domain containing 1 	ENST00000357758.3|DDHD1|ENSG00000100523.10|DDHD domain containing 1
hg19_v2_chr5_-_172756506_172756574	0.0948211	CAGUAGU	ENST00000265087.4|STC2|ENSG00000113739.6|stanniocalcin 2
hg19_v2_chr3_-_167813672_167813763	0.0941289	CAGUAGU	ENST00000470487.1|GOLIM4|ENSG00000173905.4|golgi integral membrane protein 4
hg19_v2_chr3_+_180630090_180630311	0.0929919	CAGUAGU	ENST00000357559.4|FXR1|ENSG00000114416.13|fragile X mental retardation, autosomal homolog 1 	ENST00000305586.7|FXR1|ENSG00000114416.13|fragile X mental retardation, autosomal homolog 1
hg19_v2_chr2_+_85198216_85198305	0.0924551	CAGUAGU	ENST00000456682.1|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1 	ENST00000409785.4|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1
hg19_v2_chr6_-_137113604_137113666	0.0909614	CAGUAGU	ENST00000359015.4|MAP3K5|ENSG00000197442.8|mitogen-activated protein kinase kinase kinase 5
hg19_v2_chr3_-_171178157_171178225	0.0903485	CAGUAGU	ENST00000465393.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000436636.2|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000369326.5|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000538048.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000341852.6|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase
hg19_v2_chr11_+_33278811_33279133	0.0888157	CAGUAGU	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr5_+_75699040_75699090	0.0887527	CAGUAGU	ENST00000274364.6|IQGAP2|ENSG00000145703.11|IQ motif containing GTPase activating protein 2
hg19_v2_chr10_+_31608054_31608156	0.0885379	CAGUAGU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr8_-_17104356_17104395	0.0863734	CAGUAGU	ENST00000361272.4|CNOT7|ENSG00000198791.7|CCR4-NOT transcription complex, subunit 7 	ENST00000523917.1|CNOT7|ENSG00000198791.7|CCR4-NOT transcription complex, subunit 7
hg19_v2_chr1_-_29450399_29450447	0.0860591	CAGUAGU	ENST00000521452.1|TMEM200B|ENSG00000253304.1|transmembrane protein 200B
hg19_v2_chr1_-_211752073_211752084	0.0809558	CAGUAGU	ENST00000367001.4|SLC30A1|ENSG00000170385.9|solute carrier family 30 (zinc transporter), member 1
hg19_v2_chr3_-_98620500_98620547	0.0780401	CAGUAGU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr5_+_139175380_139175431	0.07732	CAGUAGU	ENST00000274710.3|PSD2|ENSG00000146005.3|pleckstrin and Sec7 domain containing 2
hg19_v2_chr5_-_179780312_179780387	0.0761911	CAGUAGU	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr14_+_103058948_103059005	0.0755611	CAGUAGU	ENST00000262241.6|RCOR1|ENSG00000089902.8|REST corepressor 1
hg19_v2_chr9_+_129567282_129567353	0.074806	CAGUAGU	ENST00000449886.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000373464.4|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000450858.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43
hg19_v2_chr17_+_5185552_5185595	0.0741159	CAGUAGU	ENST00000262477.6|RABEP1|ENSG00000029725.12|rabaptin, RAB GTPase binding effector protein 1 	ENST00000408982.2|RABEP1|ENSG00000029725.12|rabaptin, RAB GTPase binding effector protein 1 	ENST00000575991.1|RABEP1|ENSG00000029725.12|rabaptin, RAB GTPase binding effector protein 1 	ENST00000537505.1|RABEP1|ENSG00000029725.12|rabaptin, RAB GTPase binding effector protein 1 	ENST00000546142.2|RABEP1|ENSG00000029725.12|rabaptin, RAB GTPase binding effector protein 1
hg19_v2_chr10_-_89577910_89578010	0.0738365	CAGUAGU	ENST00000308448.7|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1 	ENST00000541004.1|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1
hg19_v2_chr12_+_56401268_56401443	0.0736418	CAGUAGU	ENST00000262032.5|IKZF4|ENSG00000123411.10|IKAROS family zinc finger 4 (Eos)
hg19_v2_chr7_-_27205136_27205164	0.0723721	CAGUAGU	ENST00000396345.1|HOXA9|ENSG00000078399.11|homeobox A9 	ENST00000343483.6|HOXA9|ENSG00000078399.11|homeobox A9
hg19_v2_chr3_+_37284668_37284771	0.071181	CAGUAGU	ENST00000361924.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000444882.1|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000356847.4|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000450863.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000429018.1|GOLGA4|ENSG00000144674.12|golgin A4
hg19_v2_chr11_+_129939779_129939801	0.0705818	CAGUAGU	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr15_+_78730531_78730612	0.0688919	CAGUAGU	ENST00000258886.8|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr4_-_76598296_76598318	0.0684837	CAGUAGU	ENST00000395719.3|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr5_-_77590480_77590579	0.0682981	CAGUAGU	ENST00000519295.1|AP3B1|ENSG00000132842.9|adaptor-related protein complex 3, beta 1 subunit 	ENST00000255194.6|AP3B1|ENSG00000132842.9|adaptor-related protein complex 3, beta 1 subunit
hg19_v2_chr8_-_74791051_74791145	0.0672622	CAGUAGU	ENST00000453587.2|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000602969.1|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000602593.1|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000419880.3|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000517608.1|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative)
hg19_v2_chrX_+_117861535_117861592	0.0663131	CAGUAGU	ENST00000371666.3|IL13RA1|ENSG00000131724.6|interleukin 13 receptor, alpha 1 	ENST00000371642.1|IL13RA1|ENSG00000131724.6|interleukin 13 receptor, alpha 1
hg19_v2_chr4_-_129208940_129208976	0.0662516	CAGUAGU	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr15_-_49338748_49338765	0.0661243	CAGUAGU	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr3_-_69435224_69435280	0.0659281	CAGUAGU	ENST00000398540.3|FRMD4B|ENSG00000114541.10|FERM domain containing 4B
hg19_v2_chr2_+_179345173_179345221	0.0654528	CAGUAGU	ENST00000234453.5|PLEKHA3|ENSG00000116095.6|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3
hg19_v2_chr7_-_83824169_83824217	0.0649256	CAGUAGU	ENST00000265362.4|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr2_+_148602058_148602185	0.0646459	CAGUAGU	ENST00000241416.7|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000535787.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000404590.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA
hg19_v2_chr7_-_2883928_2883993	0.063398	CAGUAGU	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr12_-_77272765_77272840	0.0627266	CAGUAGU	ENST00000547435.1|CSRP2|ENSG00000175183.5|cysteine and glycine-rich protein 2 	ENST00000552330.1|CSRP2|ENSG00000175183.5|cysteine and glycine-rich protein 2 	ENST00000546966.1|CSRP2|ENSG00000175183.5|cysteine and glycine-rich protein 2 	ENST00000311083.5|CSRP2|ENSG00000175183.5|cysteine and glycine-rich protein 2
hg19_v2_chr12_-_76478686_76478813	0.0607465	CAGUAGU	ENST00000261182.8|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr1_-_235491462_235491534	0.0602312	CAGUAGU	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr6_+_53659746_53659817	0.0590444	CAGUAGU	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr8_+_29952914_29953016	0.0579341	CAGUAGU	ENST00000321250.8|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000518001.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000520682.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000442880.2|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000523116.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1
hg19_v2_chr9_+_125703282_125703337	0.0563976	CAGUAGU	ENST00000373647.4|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1 	ENST00000402311.1|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr15_-_56209306_56209344	0.0561258	CAGUAGU	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr10_+_98592009_98592061	0.0553755	CAGUAGU	ENST00000540664.1|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor 	ENST00000371103.3|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor
hg19_v2_chr1_+_87170247_87170276	0.0548488	CAGUAGU	ENST00000370558.4|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr17_-_1303462_1303672	0.053795	CAGUAGU	ENST00000573026.1|YWHAE|ENSG00000108953.12|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 	ENST00000575977.1|YWHAE|ENSG00000108953.12|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 	ENST00000571732.1|YWHAE|ENSG00000108953.12|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 	ENST00000264335.8|YWHAE|ENSG00000108953.12|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon
hg19_v2_chrX_+_16964794_16964861	0.0537243	CAGUAGU	ENST00000357277.3|REPS2|ENSG00000169891.13|RALBP1 associated Eps domain containing 2
hg19_v2_chr10_+_111767720_111767752	0.0506233	CAGUAGU	ENST00000356080.4|ADD3|ENSG00000148700.9|adducin 3 (gamma) 	ENST00000277900.8|ADD3|ENSG00000148700.9|adducin 3 (gamma)
hg19_v2_chr10_+_60936347_60936358	0.0505498	CAGUAGU	ENST00000373880.4|PHYHIPL|ENSG00000165443.7|phytanoyl-CoA 2-hydroxylase interacting protein-like
hg19_v2_chr16_+_15737124_15737254	0.0498394	CAGUAGU	ENST00000396355.1|NDE1|ENSG00000072864.8|nudE neurodevelopment protein 1 	ENST00000396353.2|NDE1|ENSG00000072864.8|nudE neurodevelopment protein 1
hg19_v2_chr14_+_100111447_100111480	0.04958	CAGUAGU	ENST00000330710.5|HHIPL1|ENSG00000182218.5|HHIP-like 1 	ENST00000357223.2|HHIPL1|ENSG00000182218.5|HHIP-like 1
hg19_v2_chr6_+_163835669_163835693	0.0479786	CAGUAGU	ENST00000453779.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000275262.7|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000392127.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000361752.3|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding
hg19_v2_chr17_+_16593539_16593639	0.0479461	CAGUAGU	ENST00000340621.5|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000399273.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000443444.2|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000360524.8|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000456009.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A
hg19_v2_chr3_+_152017181_152017229	0.047027	CAGUAGU	ENST00000498502.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324196.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000545754.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000357472.3|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr9_-_3525968_3526016	0.0458803	CAGUAGU	ENST00000382004.3|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000302303.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000449190.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression)
hg19_v2_chr3_-_138553594_138553684	0.0449159	CAGUAGU	ENST00000477593.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta 	ENST00000483968.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta
hg19_v2_chr7_-_75988321_75988348	0.0446747	CAGUAGU	ENST00000307630.3|YWHAG|ENSG00000170027.5|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma
hg19_v2_chr6_+_161412759_161412846	0.0434349	CAGUAGU	ENST00000366919.2|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000392142.4|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000366920.2|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000348824.7|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4
hg19_v2_chr9_-_95432536_95432560	0.0432425	CAGUAGU	ENST00000287996.3|IPPK|ENSG00000127080.5|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
hg19_v2_chr5_+_141348598_141348626	0.0432155	CAGUAGU	ENST00000394520.2|RNF14|ENSG00000013561.13|ring finger protein 14 	ENST00000347642.3|RNF14|ENSG00000013561.13|ring finger protein 14
hg19_v2_chr8_-_101965146_101965236	0.0431237	CAGUAGU	ENST00000395957.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000395948.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000457309.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr7_-_105752651_105752777	0.0430313	CAGUAGU	ENST00000470347.1|SYPL1|ENSG00000008282.3|synaptophysin-like 1 	ENST00000455385.2|SYPL1|ENSG00000008282.3|synaptophysin-like 1
hg19_v2_chr3_+_150804676_150804697	0.0427281	CAGUAGU	ENST00000474524.1|MED12L|ENSG00000144893.8|mediator complex subunit 12-like 	ENST00000273432.4|MED12L|ENSG00000144893.8|mediator complex subunit 12-like
hg19_v2_chr12_-_46662772_46662835	0.042277	CAGUAGU	ENST00000549049.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000439706.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000398637.5|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr21_-_36260980_36261011	0.0411855	CAGUAGU	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr14_+_70346125_70346143	0.0405122	CAGUAGU	ENST00000361956.3|SMOC1|ENSG00000198732.6|SPARC related modular calcium binding 1 	ENST00000381280.4|SMOC1|ENSG00000198732.6|SPARC related modular calcium binding 1
hg19_v2_chr12_-_56583332_56583369	0.0392358	CAGUAGU	ENST00000347471.4|SMARCC2|ENSG00000139613.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 	ENST00000267064.4|SMARCC2|ENSG00000139613.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 	ENST00000394023.3|SMARCC2|ENSG00000139613.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
hg19_v2_chr7_+_107384142_107384173	0.0391933	CAGUAGU	ENST00000440859.3|CBLL1|ENSG00000105879.7|Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase
hg19_v2_chr2_-_37899323_37899374	0.0388197	CAGUAGU	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr1_-_93645818_93645918	0.0367113	CAGUAGU	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr11_+_66045634_66045710	0.0365513	CAGUAGU	ENST00000528852.1|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2 	ENST00000311445.6|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2
hg19_v2_chr11_-_94964354_94964374	0.0364932	CAGUAGU	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr7_+_129074266_129074306	0.035586	CAGUAGU	ENST00000249344.2|STRIP2|ENSG00000128578.5|striatin interacting protein 2 	ENST00000435494.2|STRIP2|ENSG00000128578.5|striatin interacting protein 2
hg19_v2_chr5_-_148930960_148931013	0.03425	CAGUAGU	ENST00000261798.5|CSNK1A1|ENSG00000113712.12|casein kinase 1, alpha 1 	ENST00000377843.2|CSNK1A1|ENSG00000113712.12|casein kinase 1, alpha 1
hg19_v2_chr2_-_158485387_158485517	0.0335485	CAGUAGU	ENST00000243349.8|ACVR1C|ENSG00000123612.11|activin A receptor, type IC
hg19_v2_chr20_+_31407692_31407709	0.0329468	CAGUAGU	ENST00000375571.5|MAPRE1|ENSG00000101367.8|microtubule-associated protein, RP/EB family, member 1
hg19_v2_chr3_+_137906109_137906153	0.0321643	CAGUAGU	ENST00000481646.1|ARMC8|ENSG00000114098.13|armadillo repeat containing 8 	ENST00000469044.1|ARMC8|ENSG00000114098.13|armadillo repeat containing 8 	ENST00000491704.1|ARMC8|ENSG00000114098.13|armadillo repeat containing 8 	ENST00000461600.1|ARMC8|ENSG00000114098.13|armadillo repeat containing 8
hg19_v2_chr10_-_13570533_13570533	0.0311097	CAGUAGU	ENST00000396900.2|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000396898.2|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr10_+_102106829_102106881	0.0308433	CAGUAGU	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr15_+_43425672_43425733	0.0306643	CAGUAGU	ENST00000260403.2|TMEM62|ENSG00000137842.2|transmembrane protein 62
hg19_v2_chr1_-_19283163_19283180	0.0294706	CAGUAGU	ENST00000455833.2|IFFO2|ENSG00000169991.6|intermediate filament family orphan 2
hg19_v2_chr13_-_76056250_76056280	0.0290406	CAGUAGU	ENST00000377636.3|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000431480.2|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000377625.2|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000425511.1|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4
hg19_v2_chr3_-_105587879_105587892	0.0282399	CAGUAGU	ENST00000264122.4|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000403724.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000405772.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr5_-_53606396_53606431	0.0281398	CAGUAGU	ENST00000504924.1|ARL15|ENSG00000185305.6|ADP-ribosylation factor-like 15 	ENST00000507646.2|ARL15|ENSG00000185305.6|ADP-ribosylation factor-like 15 	ENST00000502271.1|ARL15|ENSG00000185305.6|ADP-ribosylation factor-like 15
hg19_v2_chr1_+_224301787_224301836	0.0279871	CAGUAGU	ENST00000366862.5|FBXO28|ENSG00000143756.7|F-box protein 28 	ENST00000424254.2|FBXO28|ENSG00000143756.7|F-box protein 28
hg19_v2_chr8_-_42397037_42397121	0.027949	CAGUAGU	ENST00000342228.3|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr3_-_185655795_185655924	0.0279322	CAGUAGU	ENST00000342294.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000382191.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000453386.2|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila)
hg19_v2_chr6_+_35182176_35182196	0.0272994	CAGUAGU	ENST00000394681.1|SCUBE3|ENSG00000146197.7|signal peptide, CUB domain, EGF-like 3 	ENST00000274938.7|SCUBE3|ENSG00000146197.7|signal peptide, CUB domain, EGF-like 3
hg19_v2_chr2_-_24149977_24150007	0.0271218	CAGUAGU	ENST00000238789.5|ATAD2B|ENSG00000119778.10|ATPase family, AAA domain containing 2B
hg19_v2_chr9_+_33817461_33817565	0.0269225	CAGUAGU	ENST00000263228.3|UBE2R2|ENSG00000107341.4|ubiquitin-conjugating enzyme E2R 2
hg19_v2_chr3_-_56835967_56835995	0.0267195	CAGUAGU	ENST00000495373.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3 	ENST00000296315.3|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr3_+_38206975_38207101	0.0267179	CAGUAGU	ENST00000446845.1|OXSR1|ENSG00000172939.4|oxidative stress responsive 1 	ENST00000311806.3|OXSR1|ENSG00000172939.4|oxidative stress responsive 1
hg19_v2_chr15_+_41221536_41221591	0.0259718	CAGUAGU	ENST00000249749.5|DLL4|ENSG00000128917.5|delta-like 4 (Drosophila)
hg19_v2_chr10_+_112257596_112257634	0.0259408	CAGUAGU	ENST00000369583.3|DUSP5|ENSG00000138166.5|dual specificity phosphatase 5
hg19_v2_chr6_+_96463840_96463892	0.0248164	CAGUAGU	ENST00000302103.5|FUT9|ENSG00000172461.6|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)
hg19_v2_chrX_+_40944871_40944888	0.0242566	CAGUAGU	ENST00000378308.2|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked 	ENST00000324545.8|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked
hg19_v2_chr2_-_206950781_206950947	0.0242195	CAGUAGU	ENST00000403263.1|INO80D|ENSG00000114933.11|INO80 complex subunit D
hg19_v2_chr14_+_67999999_68000036	0.0234669	CAGUAGU	ENST00000329153.5|PLEKHH1|ENSG00000054690.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
hg19_v2_chr2_+_159825143_159825190	0.0233912	CAGUAGU	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr5_+_52083730_52083821	0.0232533	CAGUAGU	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr1_-_52344471_52344481	0.0223778	CAGUAGU	ENST00000352171.7|NRD1|ENSG00000078618.15|nardilysin (N-arginine dibasic convertase) 	ENST00000354831.7|NRD1|ENSG00000078618.15|nardilysin (N-arginine dibasic convertase)
hg19_v2_chr12_+_862089_862343	0.0217736	CAGUAGU	ENST00000315939.6|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000537687.1|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000447667.2|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1
hg19_v2_chrX_+_44732757_44732860	0.0208463	CAGUAGU	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr14_-_27066636_27066701	0.020769	CAGUAGU	ENST00000267422.7|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000344429.5|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000574031.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000465357.2|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000547619.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1
hg19_v2_chr7_+_128379346_128379447	0.020767	CAGUAGU	ENST00000535011.2|CALU|ENSG00000128595.12|calumenin 	ENST00000542996.2|CALU|ENSG00000128595.12|calumenin 	ENST00000535623.1|CALU|ENSG00000128595.12|calumenin 	ENST00000538546.1|CALU|ENSG00000128595.12|calumenin 	ENST00000249364.4|CALU|ENSG00000128595.12|calumenin 	ENST00000449187.2|CALU|ENSG00000128595.12|calumenin
hg19_v2_chr14_-_64010046_64010107	0.0200946	CAGUAGU	ENST00000337537.3|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chrX_+_118108571_118108589	0.0197855	CAGUAGU	ENST00000304778.7|LONRF3|ENSG00000175556.12|LON peptidase N-terminal domain and ring finger 3
hg19_v2_chr2_-_172967621_172967637	0.0196673	CAGUAGU	ENST00000234198.4|DLX2|ENSG00000115844.6|distal-less homeobox 2 	ENST00000466293.2|DLX2|ENSG00000115844.6|distal-less homeobox 2
hg19_v2_chr10_+_20105157_20105184	0.0194836	CAGUAGU	ENST00000377242.3|PLXDC2|ENSG00000120594.12|plexin domain containing 2 	ENST00000377252.4|PLXDC2|ENSG00000120594.12|plexin domain containing 2
hg19_v2_chr14_-_35182994_35183034	0.0194476	CAGUAGU	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr2_-_73053126_73053184	0.0194157	CAGUAGU	ENST00000272427.6|EXOC6B|ENSG00000144036.10|exocyst complex component 6B 	ENST00000410104.1|EXOC6B|ENSG00000144036.10|exocyst complex component 6B
hg19_v2_chr6_+_10556215_10556240	0.0189149	CAGUAGU	ENST00000316170.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr8_+_125551338_125551425	0.0177915	CAGUAGU	ENST00000276689.3|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 	ENST00000518008.1|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 	ENST00000522532.1|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 	ENST00000517367.1|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa
hg19_v2_chr9_-_27573392_27573451	0.0175441	CAGUAGU	ENST00000380003.3|C9orf72|ENSG00000147894.10|chromosome 9 open reading frame 72
hg19_v2_chrX_+_133507327_133507386	0.0173515	CAGUAGU	ENST00000332070.3|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000394292.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000370799.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000416404.2|PHF6|ENSG00000156531.12|PHD finger protein 6
hg19_v2_chr12_+_14518598_14518663	0.0171675	CAGUAGU	ENST00000261168.4|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000538511.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000545723.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000543189.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536444.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr12_-_31479045_31479074	0.0171605	CAGUAGU	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr11_+_101981169_101981210	0.0171354	CAGUAGU	ENST00000526343.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000282441.5|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000537274.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000345877.2|YAP1|ENSG00000137693.9|Yes-associated protein 1
hg19_v2_chrX_-_83442915_83442985	0.0167729	CAGUAGU	ENST00000262752.2|RPS6KA6|ENSG00000072133.6|ribosomal protein S6 kinase, 90kDa, polypeptide 6 	ENST00000543399.1|RPS6KA6|ENSG00000072133.6|ribosomal protein S6 kinase, 90kDa, polypeptide 6
hg19_v2_chr1_-_94079648_94079671	0.0161914	CAGUAGU	ENST00000370247.3|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chr4_+_148538517_148538592	0.0155813	CAGUAGU	ENST00000296582.3|TMEM184C|ENSG00000164168.3|transmembrane protein 184C 	ENST00000508208.1|TMEM184C|ENSG00000164168.3|transmembrane protein 184C
hg19_v2_chr15_-_56535464_56535521	0.0155705	CAGUAGU	ENST00000559447.2|RFX7|ENSG00000181827.10|regulatory factor X, 7 	ENST00000422057.1|RFX7|ENSG00000181827.10|regulatory factor X, 7 	ENST00000317318.6|RFX7|ENSG00000181827.10|regulatory factor X, 7 	ENST00000423270.1|RFX7|ENSG00000181827.10|regulatory factor X, 7
hg19_v2_chrX_-_77150985_77151090	0.0154465	CAGUAGU	ENST00000358075.6|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr15_+_84322827_84322861	0.0151939	CAGUAGU	ENST00000286744.5|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3 	ENST00000567476.1|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3
hg19_v2_chr8_-_30891078_30891231	0.0148226	CAGUAGU	ENST00000339382.2|PURG|ENSG00000172733.10|purine-rich element binding protein G 	ENST00000475541.1|PURG|ENSG00000172733.10|purine-rich element binding protein G
hg19_v2_chr6_+_13615554_13615601	0.0148195	CAGUAGU	ENST00000451315.2|NOL7|ENSG00000225921.2|nucleolar protein 7, 27kDa
hg19_v2_chrX_-_30885319_30885319	0.0145962	CAGUAGU	ENST00000378933.1|TAB3|ENSG00000157625.11|TGF-beta activated kinase 1/MAP3K7 binding protein 3
hg19_v2_chr4_-_39979576_39979588	0.0145439	CAGUAGU	ENST00000303538.8|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 	ENST00000503396.1|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
hg19_v2_chr13_-_86373536_86373623	0.0143935	CAGUAGU	ENST00000400286.2|SLITRK6|ENSG00000184564.8|SLIT and NTRK-like family, member 6
hg19_v2_chr2_-_204400113_204400149	0.0142781	CAGUAGU	ENST00000319170.5|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr5_+_172483347_172483407	0.0142681	CAGUAGU	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr1_+_66797687_66797884	0.0132869	CAGUAGU	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr6_+_84569359_84569445	0.0131674	CAGUAGU	ENST00000369681.5|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4 	ENST00000369679.4|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4
hg19_v2_chrX_+_119495934_119495997	0.0129353	CAGUAGU	ENST00000218008.3|ATP1B4|ENSG00000101892.7|ATPase, Na+/K+ transporting, beta 4 polypeptide 	ENST00000361319.3|ATP1B4|ENSG00000101892.7|ATPase, Na+/K+ transporting, beta 4 polypeptide 	ENST00000539306.1|ATP1B4|ENSG00000101892.7|ATPase, Na+/K+ transporting, beta 4 polypeptide
hg19_v2_chr15_-_37390482_37390572	0.0124723	CAGUAGU	ENST00000559085.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000397624.3|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr7_-_105517021_105517050	0.0123748	CAGUAGU	ENST00000318724.4|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1 	ENST00000419735.3|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr11_+_120207787_120207962	0.0117475	CAGUAGU	ENST00000397843.2|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12 	ENST00000356641.3|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr14_+_75745477_75745680	0.0115707	CAGUAGU	ENST00000303562.4|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554617.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554212.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000535987.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000555242.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr12_+_62860581_62860629	0.0104886	CAGUAGU	ENST00000393632.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393630.3|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000280379.6|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000546600.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552738.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393629.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552115.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae)
hg19_v2_chr4_-_79860506_79860600	0.0103098	CAGUAGU	ENST00000295462.3|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III 	ENST00000380645.4|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III 	ENST00000512733.1|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III
hg19_v2_chr13_-_30169807_30169839	0.00981417	CAGUAGU	ENST00000380752.5|SLC7A1|ENSG00000139514.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
hg19_v2_chr7_-_76829125_76829143	0.00962332	CAGUAGU	ENST00000248598.5|FGL2|ENSG00000127951.5|fibrinogen-like 2
hg19_v2_chr2_+_44396000_44396053	0.00893339	CAGUAGU	ENST00000409895.4|PPM1B|ENSG00000138032.16|protein phosphatase, Mg2+/Mn2+ dependent, 1B 	ENST00000409432.3|PPM1B|ENSG00000138032.16|protein phosphatase, Mg2+/Mn2+ dependent, 1B 	ENST00000282412.4|PPM1B|ENSG00000138032.16|protein phosphatase, Mg2+/Mn2+ dependent, 1B 	ENST00000378551.2|PPM1B|ENSG00000138032.16|protein phosphatase, Mg2+/Mn2+ dependent, 1B 	ENST00000345249.4|PPM1B|ENSG00000138032.16|protein phosphatase, Mg2+/Mn2+ dependent, 1B
hg19_v2_chr1_+_161736072_161736093	0.00825118	CAGUAGU	ENST00000367942.3|ATF6|ENSG00000118217.5|activating transcription factor 6
hg19_v2_chr9_-_72374848_72374894	0.0078937	CAGUAGU	ENST00000377200.5|PTAR1|ENSG00000188647.8|protein prenyltransferase alpha subunit repeat containing 1 	ENST00000340434.4|PTAR1|ENSG00000188647.8|protein prenyltransferase alpha subunit repeat containing 1 	ENST00000472967.2|PTAR1|ENSG00000188647.8|protein prenyltransferase alpha subunit repeat containing 1
hg19_v2_chr6_-_75915757_75915775	0.00785125	CAGUAGU	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr1_+_65613217_65613331	0.00728574	CAGUAGU	ENST00000545314.1|AK4|ENSG00000162433.10|adenylate kinase 4
hg19_v2_chr5_-_16936340_16936418	0.00725083	CAGUAGU	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr15_-_77363513_77363570	0.00700156	CAGUAGU	ENST00000267970.4|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chrX_-_77041685_77041716	0.00656637	CAGUAGU	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr1_+_184356188_184356200	0.00474123	CAGUAGU	ENST00000235307.6|C1orf21|ENSG00000116667.8|chromosome 1 open reading frame 21
hg19_v2_chr12_-_96794143_96794264	0.004292	CAGUAGU	ENST00000543119.2|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr5_+_149109825_149109907	0.00426013	CAGUAGU	ENST00000360453.4|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000394320.3|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000309241.5|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta
hg19_v2_chr7_-_135433534_135433594	0.00393332	CAGUAGU	ENST00000338588.3|FAM180A|ENSG00000189320.4|family with sequence similarity 180, member A
hg19_v2_chr13_+_32605437_32605473	0.00384696	CAGUAGU	ENST00000380250.3|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr4_+_55095264_55095390	0.00358886	CAGUAGU	ENST00000257290.5|PDGFRA|ENSG00000134853.7|platelet-derived growth factor receptor, alpha polypeptide
hg19_v2_chr6_+_26365443_26365503	0.00302714	CAGUAGU	ENST00000527422.1|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000356386.2|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000396934.3|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000377708.2|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000396948.1|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000508906.2|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2
hg19_v2_chr1_+_15943995_15944014	0.00175851	CAGUAGU	ENST00000480945.1|DDI2|ENSG00000197312.7|DNA-damage inducible 1 homolog 2 (S. cerevisiae)
hg19_v2_chr4_+_41937131_41937211	0.00169706	CAGUAGU	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chr8_+_67579807_67579887	0.0015994	CAGUAGU	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr2_+_46524537_46524553	0.00101401	CAGUAGU	ENST00000263734.3|EPAS1|ENSG00000116016.9|endothelial PAS domain protein 1
hg19_v2_chr16_+_58549378_58549392	0.000593483	CAGUAGU	ENST00000310682.2|SETD6|ENSG00000103037.7|SET domain containing 6 	ENST00000394266.4|SETD6|ENSG00000103037.7|SET domain containing 6 	ENST00000219315.4|SETD6|ENSG00000103037.7|SET domain containing 6
