hg19_v2_chr11_-_67141640_67141651	0.174565	BRCA1	ENST00000533438.1|CLCF1|ENSG00000175505.9|cardiotrophin-like cytokine factor 1
hg19_v2_chr8_+_37553261_37553282	0.14118	BRCA1	ENST00000331569.4|ZNF703|ENSG00000183779.5|zinc finger protein 703
hg19_v2_chrX_-_70288234_70288291	0.132774	BRCA1	ENST00000276105.3|SNX12|ENSG00000147164.7|sorting nexin 12 	ENST00000374274.3|SNX12|ENSG00000147164.7|sorting nexin 12
hg19_v2_chr17_+_21730180_21730256	0.121601	BRCA1	ENST00000584398.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4
hg19_v2_chr19_-_40324767_40324841	0.1009	BRCA1	ENST00000601972.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000430012.2|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000323039.5|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000348817.3|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr17_-_27230035_27230105	0.0923831	BRCA1	ENST00000378895.4|DHRS13|ENSG00000167536.9|dehydrogenase/reductase (SDR family) member 13 	ENST00000394901.3|DHRS13|ENSG00000167536.9|dehydrogenase/reductase (SDR family) member 13
hg19_v2_chr14_+_32030582_32030661	0.0902204	BRCA1	ENST00000550649.1|NUBPL|ENSG00000151413.12|nucleotide binding protein-like 	ENST00000281081.7|NUBPL|ENSG00000151413.12|nucleotide binding protein-like
hg19_v2_chr14_-_69261310_69261453	0.0794661	BRCA1	ENST00000336440.3|ZFP36L1|ENSG00000185650.8|ZFP36 ring finger protein-like 1
hg19_v2_chr12_-_49449107_49449107	0.0614138	BRCA1	ENST00000301067.7|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr10_+_104404644_104404726	0.0608244	BRCA1	ENST00000462202.2|TRIM8|ENSG00000171206.9|tripartite motif containing 8
hg19_v2_chr5_+_139493665_139493718	0.0600105	BRCA1	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chr17_-_56296580_56296666	0.0597169	BRCA1	ENST00000313863.6|MKS1|ENSG00000011143.12|Meckel syndrome, type 1 	ENST00000546108.1|MKS1|ENSG00000011143.12|Meckel syndrome, type 1 	ENST00000337050.7|MKS1|ENSG00000011143.12|Meckel syndrome, type 1 	ENST00000393119.2|MKS1|ENSG00000011143.12|Meckel syndrome, type 1
hg19_v2_chr2_+_196522032_196522173	0.0569791	BRCA1	ENST00000418005.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chrX_-_77150911_77150960	0.056944	BRCA1	ENST00000373336.3|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr17_+_36584662_36584730	0.0564377	BRCA1	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr3_+_184056614_184056641	0.0522289	BRCA1	ENST00000453072.1|FAM131A|ENSG00000175182.9|family with sequence similarity 131, member A
hg19_v2_chr2_+_108994466_108994485	0.0513583	BRCA1	ENST00000272452.2|SULT1C4|ENSG00000198075.5|sulfotransferase family, cytosolic, 1C, member 4
hg19_v2_chr1_+_70687137_70687200	0.0507123	BRCA1	ENST00000436161.2|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11
hg19_v2_chr7_+_99717230_99717321	0.0486814	BRCA1	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr5_+_140186647_140186773	0.0467901	BRCA1	ENST00000512229.2|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000356878.4|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000530339.1|PCDHA4|ENSG00000204967.6|protocadherin alpha 4
hg19_v2_chr12_-_49418407_49418407	0.0461144	BRCA1	ENST00000526209.1|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr1_-_160232197_160232284	0.0426529	BRCA1	ENST00000419626.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000610139.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000475733.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000407642.2|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000368073.3|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000326837.2|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr8_-_116681123_116681143	0.0421978	BRCA1	ENST00000519674.1|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr16_-_790982_791014	0.041639	BRCA1	ENST00000301694.5|NARFL|ENSG00000103245.9|nuclear prelamin A recognition factor-like 	ENST00000251588.2|NARFL|ENSG00000103245.9|nuclear prelamin A recognition factor-like
hg19_v2_chr7_-_99716952_99717021	0.0414938	BRCA1	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr3_-_127455200_127455223	0.0409309	BRCA1	ENST00000398101.3|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr10_-_75385711_75385774	0.0392624	BRCA1	ENST00000433394.1|USP54|ENSG00000166348.13|ubiquitin specific peptidase 54
hg19_v2_chr6_+_42981922_42982047	0.0379314	BRCA1	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chrX_+_150565038_150565070	0.0360352	BRCA1	ENST00000370361.1|VMA21|ENSG00000160131.9|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
hg19_v2_chr8_+_22462532_22462597	0.0347004	BRCA1	ENST00000389279.3|CCAR2|ENSG00000158941.12|cell cycle and apoptosis regulator 2
hg19_v2_chr10_+_102295616_102295713	0.0345402	BRCA1	ENST00000299163.6|HIF1AN|ENSG00000166135.9|hypoxia inducible factor 1, alpha subunit inhibitor
hg19_v2_chr6_+_12717892_12717903	0.0323949	BRCA1	ENST00000379350.1|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr9_-_86593238_86593367	0.0323508	BRCA1	ENST00000351839.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr10_-_102289611_102289757	0.0309776	BRCA1	ENST00000299166.4|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 	ENST00000370320.4|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 	ENST00000535773.1|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000531258.1|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 	ENST00000370322.1|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa
hg19_v2_chr19_+_45394477_45394546	0.0300872	BRCA1	ENST00000252487.5|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000405636.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000592434.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000426677.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000589649.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast)
hg19_v2_chr1_-_160232291_160232304	0.0296172	BRCA1	ENST00000368074.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000447377.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr6_-_42981651_42981706	0.0274278	BRCA1	ENST00000244711.3|MEA1|ENSG00000124733.3|male-enhanced antigen 1
hg19_v2_chr8_-_116681221_116681236	0.027299	BRCA1	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr5_-_124082279_124082320	0.0272885	BRCA1	ENST00000513986.1|ZNF608|ENSG00000168916.11|zinc finger protein 608
hg19_v2_chr15_+_67430339_67430366	0.0269929	BRCA1	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr6_-_25832254_25832287	0.0267294	BRCA1	ENST00000476801.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000244527.4|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000427328.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr8_+_97773202_97773233	0.0263897	BRCA1	ENST00000519484.1|CPQ|ENSG00000104324.11|carboxypeptidase Q
hg19_v2_chr15_-_88799948_88799978	0.0257316	BRCA1	ENST00000394480.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr6_-_137314371_137314394	0.0256206	BRCA1	ENST00000432330.1|RP11-55K22.5|ENSG00000225391.1|RP11-55K22.5	ENST00000418699.1|RP11-55K22.5|ENSG00000225391.1|RP11-55K22.5
hg19_v2_chr16_-_790887_790934	0.0246992	BRCA1	ENST00000540986.1|NARFL|ENSG00000103245.9|nuclear prelamin A recognition factor-like
hg19_v2_chr19_-_37663572_37663643	0.0243136	BRCA1	ENST00000588354.1|ZNF585A|ENSG00000196967.6|zinc finger protein 585A 	ENST00000292841.5|ZNF585A|ENSG00000196967.6|zinc finger protein 585A 	ENST00000355533.2|ZNF585A|ENSG00000196967.6|zinc finger protein 585A 	ENST00000356958.4|ZNF585A|ENSG00000196967.6|zinc finger protein 585A
hg19_v2_chr17_+_74372662_74372742	0.0239562	BRCA1	ENST00000591651.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1 	ENST00000545180.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1
hg19_v2_chr19_-_48389651_48389656	0.0239218	BRCA1	ENST00000222002.3|SULT2A1|ENSG00000105398.3|sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
hg19_v2_chr14_-_75179774_75179818	0.0219096	BRCA1	ENST00000555249.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000556202.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000338772.5|AC007956.1|ENSG00000214670.3|Full-length cDNA 5-PRIME end of clone CS0CAP004YO05 of Thymus of Homo sapiens (human); Uncharacterized protein  	ENST00000356357.4|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1
hg19_v2_chr1_-_173020056_173020103	0.0214563	BRCA1	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr2_-_179914760_179914884	0.0204882	BRCA1	ENST00000420890.2|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141 	ENST00000409284.1|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141 	ENST00000443758.1|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141 	ENST00000446116.1|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141
hg19_v2_chr10_-_61900762_61900779	0.0203549	BRCA1	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr10_+_122610853_122610999	0.0193598	BRCA1	ENST00000604585.1|WDR11|ENSG00000120008.11|WD repeat domain 11
hg19_v2_chr6_+_33172407_33172419	0.019095	BRCA1	ENST00000374662.3|HSD17B8|ENSG00000204228.3|hydroxysteroid (17-beta) dehydrogenase 8
hg19_v2_chr11_+_47291193_47291267	0.01861	BRCA1	ENST00000428807.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402799.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000406482.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000349238.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000311027.5|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000407859.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000395344.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000444117.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr19_-_37663332_37663344	0.0183265	BRCA1	ENST00000392157.2|ZNF585A|ENSG00000196967.6|zinc finger protein 585A
hg19_v2_chr13_+_27825446_27825506	0.0175307	BRCA1	ENST00000311549.6|RPL21|ENSG00000122026.6|ribosomal protein L21
hg19_v2_chrX_+_10124977_10125036	0.0169342	BRCA1	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr8_+_22022800_22022869	0.0158201	BRCA1	ENST00000397814.3|BMP1|ENSG00000168487.13|bone morphogenetic protein 1
hg19_v2_chr3_+_185303962_185304021	0.0149567	BRCA1	ENST00000296257.5|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr7_-_99716940_99716943	0.0148552	BRCA1	ENST00000440225.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr8_+_22022653_22022765	0.0141696	BRCA1	ENST00000354870.5|BMP1|ENSG00000168487.13|bone morphogenetic protein 1 	ENST00000397816.3|BMP1|ENSG00000168487.13|bone morphogenetic protein 1 	ENST00000306349.8|BMP1|ENSG00000168487.13|bone morphogenetic protein 1
hg19_v2_chr1_-_170043709_170043874	0.0140435	BRCA1	ENST00000367767.1|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3 	ENST00000361580.2|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3 	ENST00000538366.1|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3
hg19_v2_chr5_+_139027877_139027918	0.0134588	BRCA1	ENST00000302517.3|CXXC5|ENSG00000171604.7|CXXC finger protein 5
hg19_v2_chr6_-_170862322_170862429	0.00897924	BRCA1	ENST00000262193.6|PSMB1|ENSG00000008018.8|proteasome (prosome, macropain) subunit, beta type, 1
hg19_v2_chr10_+_122610687_122610809	0.00860377	BRCA1	ENST00000263461.6|WDR11|ENSG00000120008.11|WD repeat domain 11
hg19_v2_chrX_+_49644470_49644470	0.00846003	BRCA1	ENST00000508866.2|USP27X|ENSG00000242013.4|ubiquitin specific peptidase 27, X-linked
hg19_v2_chr7_+_44646177_44646201	0.0075883	BRCA1	ENST00000443864.2|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENST00000447398.1|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENST00000449767.1|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENST00000419661.1|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
hg19_v2_chr7_+_44646162_44646176	0.00719003	BRCA1	ENST00000439616.2|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
hg19_v2_chr19_+_46000479_46000502	0.00697013	BRCA1	ENST00000456399.2|PPM1N|ENSG00000213889.6|protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)
hg19_v2_chr17_+_36908984_36909052	0.00591676	BRCA1	ENST00000225426.4|PSMB3|ENSG00000108294.4|proteasome (prosome, macropain) subunit, beta type, 3 	ENST00000579088.1|PSMB3|ENSG00000108294.4|proteasome (prosome, macropain) subunit, beta type, 3
hg19_v2_chr1_+_10271674_10271674	0.00568195	BRCA1	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr12_+_122880045_122880153	0.00534314	BRCA1	ENST00000539034.1|RP11-450K4.1|ENSG00000257097.1|RP11-450K4.1	ENST00000535976.1|RP11-450K4.1|ENSG00000257097.1|RP11-450K4.1
hg19_v2_chr1_-_115301235_115301297	0.00440912	BRCA1	ENST00000525878.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr3_-_176914191_176914235	0.00401852	BRCA1	ENST00000437738.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000424913.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000443315.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr2_-_158182410_158182446	0.00345175	BRCA1	ENST00000419116.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000410096.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr2_-_158182105_158182171	0.00207935	BRCA1	ENST00000409925.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr1_+_70687079_70687108	0.00202692	BRCA1	ENST00000395136.2|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11
hg19_v2_chr8_+_97773457_97773475	0.00185716	BRCA1	ENST00000521142.1|CPQ|ENSG00000104324.11|carboxypeptidase Q
hg19_v2_chr2_-_158182322_158182358	0.0017725	BRCA1	ENST00000420719.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000409216.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr19_+_55888186_55888204	0.00155003	BRCA1	ENST00000291934.3|TMEM190|ENSG00000160472.4|transmembrane protein 190
hg19_v2_chr2_-_152118352_152118393	0.00110117	BRCA1	ENST00000331426.5|RBM43|ENSG00000184898.6|RNA binding motif protein 43
hg19_v2_chr10_-_95209_95241	0.000351395	BRCA1	ENST00000332708.5|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII 	ENST00000309812.4|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII
hg19_v2_chr2_+_203879568_203879611	0.000332718	BRCA1	ENST00000449802.1|NBEAL1|ENSG00000144426.14|neurobeachin-like 1
