hg19_v2_chr22_+_33197683_33197698	0.211339	AGCUUAU	ENST00000266085.6|TIMP3|ENSG00000100234.11|TIMP metallopeptidase inhibitor 3
hg19_v2_chr3_+_159706537_159706741	0.190496	AGCUUAU	ENST00000305579.2|IL12A|ENSG00000168811.2|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) 	ENST00000480787.1|IL12A|ENSG00000168811.2|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) 	ENST00000466512.1|IL12A|ENSG00000168811.2|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)
hg19_v2_chr4_+_113152881_113152912	0.151168	AGCUUAU	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr1_+_218519577_218519594	0.121756	AGCUUAU	ENST00000366930.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2 	ENST00000366929.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2
hg19_v2_chr11_+_12308447_12308447	0.115433	AGCUUAU	ENST00000256186.2|MICALCL|ENSG00000133808.4|MICAL C-terminal like
hg19_v2_chr20_+_56884752_56884799	0.114819	AGCUUAU	ENST00000244040.3|RAB22A|ENSG00000124209.3|RAB22A, member RAS oncogene family
hg19_v2_chr3_+_110790590_110790603	0.107057	AGCUUAU	ENST00000485303.1|PVRL3|ENSG00000177707.6|poliovirus receptor-related 3
hg19_v2_chr1_-_207224307_207224422	0.106045	AGCUUAU	ENST00000315927.4|YOD1|ENSG00000180667.6|YOD1 deubiquitinase
hg19_v2_chr8_+_87354945_87355012	0.104904	AGCUUAU	ENST00000517970.1|WWP1|ENSG00000123124.9|WW domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr13_+_73632897_73632930	0.0979913	AGCUUAU	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr3_+_141205852_141205929	0.0979532	AGCUUAU	ENST00000286364.3|RASA2|ENSG00000155903.7|RAS p21 protein activator 2 	ENST00000452898.1|RASA2|ENSG00000155903.7|RAS p21 protein activator 2
hg19_v2_chrX_-_19140677_19140760	0.0970334	AGCUUAU	ENST00000357544.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379869.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000360279.4|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379873.2|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379878.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000354791.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379876.1|GPR64|ENSG00000173698.13|G protein-coupled receptor 64
hg19_v2_chr5_+_67511524_67511628	0.092311	AGCUUAU	ENST00000521381.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 	ENST00000521657.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chrX_+_123095155_123095179	0.0917232	AGCUUAU	ENST00000371160.1|STAG2|ENSG00000101972.14|stromal antigen 2 	ENST00000435103.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr4_-_140098339_140098392	0.0913964	AGCUUAU	ENST00000394235.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr11_+_33278811_33279133	0.0906575	AGCUUAU	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr2_-_64371546_64371588	0.080823	AGCUUAU	ENST00000358912.4|PELI1|ENSG00000197329.7|pellino E3 ubiquitin protein ligase 1
hg19_v2_chr7_-_139876812_139876860	0.0802518	AGCUUAU	ENST00000397560.2|JHDM1D|ENSG00000006459.6|lysine (K)-specific demethylase 7A
hg19_v2_chr2_-_37193606_37193633	0.0796036	AGCUUAU	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chr17_-_30669138_30669208	0.0726581	AGCUUAU	ENST00000225805.4|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000577809.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr2_-_180129484_180129574	0.070998	AGCUUAU	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr20_-_10654639_10654694	0.0708006	AGCUUAU	ENST00000254958.5|JAG1|ENSG00000101384.7|jagged 1
hg19_v2_chr15_+_66161871_66161893	0.0692259	AGCUUAU	ENST00000569896.1|RAB11A|ENSG00000103769.5|RAB11A, member RAS oncogene family
hg19_v2_chr4_-_147442982_147443019	0.0689706	AGCUUAU	ENST00000511374.1|SLC10A7|ENSG00000120519.10|solute carrier family 10, member 7 	ENST00000264986.3|SLC10A7|ENSG00000120519.10|solute carrier family 10, member 7
hg19_v2_chr7_-_91875358_91875480	0.0674369	AGCUUAU	ENST00000458177.1|KRIT1|ENSG00000001631.10|KRIT1, ankyrin repeat containing 	ENST00000394507.1|KRIT1|ENSG00000001631.10|KRIT1, ankyrin repeat containing 	ENST00000340022.2|KRIT1|ENSG00000001631.10|KRIT1, ankyrin repeat containing 	ENST00000444960.1|KRIT1|ENSG00000001631.10|KRIT1, ankyrin repeat containing
hg19_v2_chrX_-_24045303_24045303	0.0672375	AGCUUAU	ENST00000328046.8|KLHL15|ENSG00000174010.9|kelch-like family member 15
hg19_v2_chr5_-_89770582_89770603	0.0628878	AGCUUAU	ENST00000316610.6|MBLAC2|ENSG00000176055.9|metallo-beta-lactamase domain containing 2
hg19_v2_chr5_+_170846640_170846660	0.0616931	AGCUUAU	ENST00000274625.5|FGF18|ENSG00000156427.7|fibroblast growth factor 18
hg19_v2_chr8_-_10588010_10588030	0.0611246	AGCUUAU	ENST00000304501.1|SOX7|ENSG00000171056.6|SRY (sex determining region Y)-box 7
hg19_v2_chr17_+_30264014_30264086	0.0602322	AGCUUAU	ENST00000322652.5|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit 	ENST00000580398.1|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit
hg19_v2_chr5_-_150080472_150080669	0.0582892	AGCUUAU	ENST00000521464.1|RBM22|ENSG00000086589.7|RNA binding motif protein 22 	ENST00000518917.1|RBM22|ENSG00000086589.7|RNA binding motif protein 22 	ENST00000447771.2|RBM22|ENSG00000086589.7|RNA binding motif protein 22 	ENST00000540000.1|RBM22|ENSG00000086589.7|RNA binding motif protein 22 	ENST00000199814.4|RBM22|ENSG00000086589.7|RNA binding motif protein 22
hg19_v2_chr16_-_47007545_47007699	0.057976	AGCUUAU	ENST00000317089.5|DNAJA2|ENSG00000069345.7|DnaJ (Hsp40) homolog, subfamily A, member 2
hg19_v2_chr10_-_12238071_12238154	0.0574803	AGCUUAU	ENST00000491614.1|NUDT5|ENSG00000165609.8|nudix (nucleoside diphosphate linked moiety X)-type motif 5 	ENST00000537776.1|NUDT5|ENSG00000165609.8|nudix (nucleoside diphosphate linked moiety X)-type motif 5
hg19_v2_chr15_-_38856836_38857029	0.0566275	AGCUUAU	ENST00000450598.2|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated) 	ENST00000559830.1|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated) 	ENST00000558164.1|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated) 	ENST00000310803.5|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated)
hg19_v2_chr10_+_70320413_70320413	0.0557393	AGCUUAU	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr3_-_72496035_72496069	0.0543906	AGCUUAU	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr4_-_103748880_103749047	0.0531941	AGCUUAU	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chrX_+_72783026_72783049	0.0526499	AGCUUAU	ENST00000373504.6|CHIC1|ENSG00000204116.7|cysteine-rich hydrophobic domain 1 	ENST00000373502.5|CHIC1|ENSG00000204116.7|cysteine-rich hydrophobic domain 1
hg19_v2_chr1_+_178694300_178694346	0.0498681	AGCUUAU	ENST00000367635.3|RALGPS2|ENSG00000116191.13|Ral GEF with PH domain and SH3 binding motif 2
hg19_v2_chr2_+_228678550_228678570	0.0498485	AGCUUAU	ENST00000409189.3|CCL20|ENSG00000115009.7|chemokine (C-C motif) ligand 20 	ENST00000358813.4|CCL20|ENSG00000115009.7|chemokine (C-C motif) ligand 20
hg19_v2_chrX_+_46696372_46696406	0.0477716	AGCUUAU	ENST00000218340.3|RP2|ENSG00000102218.5|retinitis pigmentosa 2 (X-linked recessive)
hg19_v2_chr17_+_17942594_17942606	0.0474531	AGCUUAU	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr4_+_48018781_48018816	0.04737	AGCUUAU	ENST00000295461.5|NIPAL1|ENSG00000163293.7|NIPA-like domain containing 1
hg19_v2_chr2_+_70142189_70142223	0.0469786	AGCUUAU	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr5_+_56111361_56111403	0.0464014	AGCUUAU	ENST00000399503.3|MAP3K1|ENSG00000095015.5|mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase
hg19_v2_chrX_-_18372792_18372847	0.0453814	AGCUUAU	ENST00000251900.4|SCML2|ENSG00000102098.13|sex comb on midleg-like 2 (Drosophila)
hg19_v2_chr7_+_102715315_102715380	0.0448651	AGCUUAU	ENST00000428183.2|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000323716.3|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000441711.2|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000454559.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000425331.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000541300.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10
hg19_v2_chr15_+_59063478_59063561	0.0447601	AGCUUAU	ENST00000559228.1|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B 	ENST00000450403.2|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B
hg19_v2_chr15_-_50978965_50979012	0.0444889	AGCUUAU	ENST00000560955.1|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7 	ENST00000313478.7|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7
hg19_v2_chr16_+_69599861_69599887	0.0437127	AGCUUAU	ENST00000354436.2|NFAT5|ENSG00000102908.16|nuclear factor of activated T-cells 5, tonicity-responsive
hg19_v2_chr12_+_85673868_85673885	0.0411222	AGCUUAU	ENST00000316824.3|ALX1|ENSG00000180318.3|ALX homeobox 1
hg19_v2_chr5_+_60628074_60628100	0.0407372	AGCUUAU	ENST00000252744.5|ZSWIM6|ENSG00000130449.5|zinc finger, SWIM-type containing 6
hg19_v2_chr3_-_48229846_48229918	0.040268	AGCUUAU	ENST00000302506.3|CDC25A|ENSG00000164045.7|cell division cycle 25A 	ENST00000351231.3|CDC25A|ENSG00000164045.7|cell division cycle 25A 	ENST00000437972.1|CDC25A|ENSG00000164045.7|cell division cycle 25A
hg19_v2_chr6_-_82462425_82462491	0.0402345	AGCUUAU	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr2_+_86947296_86947434	0.0401584	AGCUUAU	ENST00000283632.4|RMND5A|ENSG00000153561.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
hg19_v2_chr4_+_144257915_144258009	0.0400635	AGCUUAU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr17_-_40540377_40540481	0.0390558	AGCUUAU	ENST00000404395.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000389272.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000585517.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000588065.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr21_-_32931290_32931341	0.0380495	AGCUUAU	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr8_-_10697281_10697365	0.0380334	AGCUUAU	ENST00000524114.1|PINX1|ENSG00000254093.4|PIN2/TERF1 interacting, telomerase inhibitor 1 	ENST00000553390.1|SOX7|ENSG00000171056.6|SRY (sex determining region Y)-box 7 	ENST00000554914.1|SOX7|ENSG00000258724.1|Transcription factor SOX-7; Uncharacterized protein; cDNA FLJ58508, highly similar to Transcription factor SOX-7
hg19_v2_chr1_-_220101944_220102000	0.0378899	AGCUUAU	ENST00000366926.3|SLC30A10|ENSG00000196660.6|solute carrier family 30, member 10 	ENST00000536992.1|SLC30A10|ENSG00000196660.6|solute carrier family 30, member 10
hg19_v2_chr7_+_89975979_89976052	0.037722	AGCUUAU	ENST00000257659.8|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000222511.6|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000417207.1|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative)
hg19_v2_chr11_-_79151695_79151710	0.0376827	AGCUUAU	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr11_-_1593150_1593150	0.0375832	AGCUUAU	ENST00000397374.3|DUSP8|ENSG00000184545.6|dual specificity phosphatase 8
hg19_v2_chr3_+_152017181_152017229	0.0364718	AGCUUAU	ENST00000498502.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324196.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000545754.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000357472.3|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr4_+_99916765_99916776	0.0360177	AGCUUAU	ENST00000296411.6|METAP1|ENSG00000164024.7|methionyl aminopeptidase 1
hg19_v2_chr2_+_198318147_198318182	0.0358577	AGCUUAU	ENST00000263960.2|COQ10B|ENSG00000115520.4|coenzyme Q10 homolog B (S. cerevisiae)
hg19_v2_chr10_+_75757863_75757897	0.0355756	AGCUUAU	ENST00000372755.3|VCL|ENSG00000035403.12|vinculin 	ENST00000211998.4|VCL|ENSG00000035403.12|vinculin 	ENST00000417648.2|VCL|ENSG00000035403.12|vinculin
hg19_v2_chr4_-_100867864_100867889	0.035271	AGCUUAU	ENST00000442697.2|DNAJB14|ENSG00000164031.12|DnaJ (Hsp40) homolog, subfamily B, member 14
hg19_v2_chr11_+_32851487_32851496	0.0345476	AGCUUAU	ENST00000257836.3|PRRG4|ENSG00000135378.3|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
hg19_v2_chr10_-_14590644_14590669	0.0326205	AGCUUAU	ENST00000378470.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr13_-_41768654_41768714	0.0320935	AGCUUAU	ENST00000379483.3|KBTBD7|ENSG00000120696.8|kelch repeat and BTB (POZ) domain containing 7
hg19_v2_chr20_-_23030296_23030378	0.0320082	AGCUUAU	ENST00000377103.2|THBD|ENSG00000178726.6|thrombomodulin
hg19_v2_chr1_-_72748417_72748510	0.0317842	AGCUUAU	ENST00000357731.5|NEGR1|ENSG00000172260.9|neuronal growth regulator 1
hg19_v2_chr5_-_38595498_38595514	0.0301411	AGCUUAU	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr2_+_45878790_45878913	0.0298556	AGCUUAU	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chr5_+_86564739_86564791	0.0295932	AGCUUAU	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr15_-_42840961_42841005	0.0292578	AGCUUAU	ENST00000563454.1|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57 	ENST00000397130.3|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57 	ENST00000570160.1|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57 	ENST00000323443.2|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57
hg19_v2_chr6_+_4021554_4021656	0.0279065	AGCUUAU	ENST00000337659.6|PRPF4B|ENSG00000112739.12|pre-mRNA processing factor 4B
hg19_v2_chr10_-_75910789_75910821	0.0278928	AGCUUAU	ENST00000355264.4|AP3M1|ENSG00000185009.8|adaptor-related protein complex 3, mu 1 subunit
hg19_v2_chr5_-_168006591_168006638	0.0266372	AGCUUAU	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr2_+_148602058_148602185	0.026589	AGCUUAU	ENST00000241416.7|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000535787.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000404590.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA
hg19_v2_chr7_-_92463210_92463231	0.0260641	AGCUUAU	ENST00000265734.4|CDK6|ENSG00000105810.5|cyclin-dependent kinase 6
hg19_v2_chr3_-_52713729_52713784	0.0258037	AGCUUAU	ENST00000296302.7|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000356770.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000337303.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409057.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000410007.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409114.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409767.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000423351.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr5_+_154238096_154238119	0.0257182	AGCUUAU	ENST00000517568.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000524105.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000285896.6|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8
hg19_v2_chr1_+_64239657_64239724	0.0255572	AGCUUAU	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr11_-_110167352_110167447	0.0253263	AGCUUAU	ENST00000533991.1|RDX|ENSG00000137710.10|radixin 	ENST00000528498.1|RDX|ENSG00000137710.10|radixin 	ENST00000405097.1|RDX|ENSG00000137710.10|radixin 	ENST00000528900.1|RDX|ENSG00000137710.10|radixin 	ENST00000530301.1|RDX|ENSG00000137710.10|radixin 	ENST00000343115.4|RDX|ENSG00000137710.10|radixin
hg19_v2_chr9_-_99180597_99180614	0.0245456	AGCUUAU	ENST00000375256.4|ZNF367|ENSG00000165244.6|zinc finger protein 367
hg19_v2_chr15_+_59279851_59279880	0.0230145	AGCUUAU	ENST00000348370.4|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000434298.1|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000559160.1|RNF111|ENSG00000157450.11|ring finger protein 111
hg19_v2_chrX_+_100805496_100805514	0.0229183	AGCUUAU	ENST00000372829.3|ARMCX1|ENSG00000126947.7|armadillo repeat containing, X-linked 1
hg19_v2_chr1_-_115053781_115053853	0.0227472	AGCUUAU	ENST00000358465.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33 	ENST00000369543.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33
hg19_v2_chr12_-_123011536_123011547	0.0224861	AGCUUAU	ENST00000331738.7|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2 	ENST00000354654.2|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2
hg19_v2_chrX_-_20284958_20285039	0.0223675	AGCUUAU	ENST00000379565.3|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr7_+_11013491_11013553	0.0222966	AGCUUAU	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr8_-_117886955_117887105	0.0222421	AGCUUAU	ENST00000297338.2|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr11_-_94964354_94964374	0.021889	AGCUUAU	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr2_-_158485387_158485517	0.0209142	AGCUUAU	ENST00000243349.8|ACVR1C|ENSG00000123612.11|activin A receptor, type IC
hg19_v2_chr18_+_67956135_67956144	0.0208326	AGCUUAU	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr18_-_29522989_29523104	0.0205628	AGCUUAU	ENST00000582539.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000283351.4|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000582513.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8
hg19_v2_chr12_+_27932803_27932953	0.0205513	AGCUUAU	ENST00000381271.2|KLHL42|ENSG00000087448.5|kelch-like family member 42
hg19_v2_chr1_+_224301787_224301836	0.0202712	AGCUUAU	ENST00000366862.5|FBXO28|ENSG00000143756.7|F-box protein 28 	ENST00000424254.2|FBXO28|ENSG00000143756.7|F-box protein 28
hg19_v2_chr12_-_45269430_45269440	0.0201131	AGCUUAU	ENST00000395487.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr1_+_33005020_33005077	0.0194525	AGCUUAU	ENST00000373510.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A 	ENST00000316459.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A
hg19_v2_chr9_+_15553055_15553101	0.0191856	AGCUUAU	ENST00000380701.3|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr8_-_41909496_41909512	0.0188167	AGCUUAU	ENST00000265713.2|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000406337.1|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000396930.3|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000485568.1|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000426524.1|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A
hg19_v2_chr4_+_38665810_38665827	0.0187743	AGCUUAU	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr9_-_16870704_16870841	0.0184961	AGCUUAU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr15_-_55881135_55881192	0.0180187	AGCUUAU	ENST00000302000.6|PYGO1|ENSG00000171016.7|pygopus family PHD finger 1
hg19_v2_chr14_+_57046500_57046529	0.017959	AGCUUAU	ENST00000261556.6|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr9_+_36036430_36036430	0.0174844	AGCUUAU	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr5_+_172483347_172483407	0.0169404	AGCUUAU	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr5_+_179921430_179921461	0.0169305	AGCUUAU	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr1_+_2160134_2160134	0.0161765	AGCUUAU	ENST00000378536.4|SKI|ENSG00000157933.9|v-ski avian sarcoma viral oncogene homolog
hg19_v2_chr15_-_33360085_33360256	0.0153649	AGCUUAU	ENST00000334528.9|FMN1|ENSG00000248905.4|formin 1
hg19_v2_chr12_+_12764773_12764852	0.0150207	AGCUUAU	ENST00000228865.2|CREBL2|ENSG00000111269.2|cAMP responsive element binding protein-like 2
hg19_v2_chr10_+_76871454_76871467	0.0148339	AGCUUAU	ENST00000372687.4|SAMD8|ENSG00000156671.8|sterile alpha motif domain containing 8
hg19_v2_chr1_+_213123915_213123955	0.0146378	AGCUUAU	ENST00000366968.4|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000490792.1|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr10_+_72164135_72164135	0.0145289	AGCUUAU	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chr3_+_98451275_98451361	0.0143336	AGCUUAU	ENST00000265261.6|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6 	ENST00000497008.1|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
hg19_v2_chr17_+_38278530_38278605	0.0132628	AGCUUAU	ENST00000398532.4|MSL1|ENSG00000188895.7|male-specific lethal 1 homolog (Drosophila)
hg19_v2_chr14_-_31676964_31677017	0.0128372	AGCUUAU	ENST00000553700.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr11_+_101981169_101981210	0.0124207	AGCUUAU	ENST00000526343.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000282441.5|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000537274.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000345877.2|YAP1|ENSG00000137693.9|Yes-associated protein 1
hg19_v2_chr7_-_83824169_83824217	0.0122944	AGCUUAU	ENST00000265362.4|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr4_-_111544254_111544270	0.012187	AGCUUAU	ENST00000306732.3|PITX2|ENSG00000164093.11|paired-like homeodomain 2
hg19_v2_chr12_-_9913489_9913506	0.0120501	AGCUUAU	ENST00000228434.3|CD69|ENSG00000110848.4|CD69 molecule 	ENST00000536709.1|CD69|ENSG00000110848.4|CD69 molecule
hg19_v2_chr10_+_94050913_94050965	0.011755	AGCUUAU	ENST00000358935.2|MARCH5|ENSG00000198060.5|membrane-associated ring finger (C3HC4) 5
hg19_v2_chr17_+_60536002_60536040	0.0116306	AGCUUAU	ENST00000582809.1|TLK2|ENSG00000146872.13|tousled-like kinase 2
hg19_v2_chr6_+_142468361_142468382	0.0113228	AGCUUAU	ENST00000367630.4|VTA1|ENSG00000009844.11|vesicle (multivesicular body) trafficking 1
hg19_v2_chr17_+_35766965_35767030	0.0111177	AGCUUAU	ENST00000394395.2|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000589153.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000586023.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A
hg19_v2_chr6_+_148663729_148663847	0.0110278	AGCUUAU	ENST00000367467.3|SASH1|ENSG00000111961.12|SAM and SH3 domain containing 1
hg19_v2_chr1_+_15853308_15853413	0.0109341	AGCUUAU	ENST00000375838.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375847.3|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375849.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16
hg19_v2_chr7_-_30029367_30029474	0.0108292	AGCUUAU	ENST00000242059.5|SCRN1|ENSG00000136193.12|secernin 1
hg19_v2_chr1_+_169764163_169764240	0.0108184	AGCUUAU	ENST00000413811.2|C1orf112|ENSG00000000460.12|chromosome 1 open reading frame 112 	ENST00000359326.4|C1orf112|ENSG00000000460.12|chromosome 1 open reading frame 112 	ENST00000456684.1|C1orf112|ENSG00000000460.12|chromosome 1 open reading frame 112
hg19_v2_chr14_+_57735614_57735629	0.0104499	AGCUUAU	ENST00000261558.3|AP5M1|ENSG00000053770.7|adaptor-related protein complex 5, mu 1 subunit
hg19_v2_chr17_-_33416231_33416338	0.0100493	AGCUUAU	ENST00000584655.1|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000447669.2|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000315249.7|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
hg19_v2_chr14_+_64854958_64855091	0.00902387	AGCUUAU	ENST00000555709.2|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 	ENST00000554739.1|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 	ENST00000554768.1|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 	ENST00000216605.8|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase
hg19_v2_chr8_-_9008206_9008222	0.00884405	AGCUUAU	ENST00000310455.3|PPP1R3B|ENSG00000173281.4|protein phosphatase 1, regulatory subunit 3B
hg19_v2_chr2_-_69870835_69870853	0.00877142	AGCUUAU	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr17_-_77813186_77813249	0.00855998	AGCUUAU	ENST00000448310.1|CBX4|ENSG00000141582.10|chromobox homolog 4 	ENST00000269397.4|CBX4|ENSG00000141582.10|chromobox homolog 4
hg19_v2_chr16_-_4897266_4897343	0.0085121	AGCUUAU	ENST00000591451.1|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000436648.5|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000381983.3|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000588297.1|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000321919.9|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis)
hg19_v2_chr1_+_222791417_222791455	0.00846288	AGCUUAU	ENST00000344922.5|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3 	ENST00000344441.6|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3 	ENST00000344507.1|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3
hg19_v2_chr12_-_117319236_117319252	0.00773879	AGCUUAU	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr6_+_36562132_36562154	0.00752379	AGCUUAU	ENST00000373715.6|SRSF3|ENSG00000112081.12|serine/arginine-rich splicing factor 3 	ENST00000339436.7|SRSF3|ENSG00000112081.12|serine/arginine-rich splicing factor 3
hg19_v2_chr13_+_28813645_28813770	0.00668832	AGCUUAU	ENST00000282391.5|PAN3|ENSG00000152520.9|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
hg19_v2_chr13_-_36920420_36920574	0.00587928	AGCUUAU	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr1_-_19283163_19283180	0.00539864	AGCUUAU	ENST00000455833.2|IFFO2|ENSG00000169991.6|intermediate filament family orphan 2
hg19_v2_chr17_-_32906388_32906388	0.00535294	AGCUUAU	ENST00000357754.1|C17orf102|ENSG00000197322.1|chromosome 17 open reading frame 102
hg19_v2_chr11_+_120207787_120207962	0.00467626	AGCUUAU	ENST00000397843.2|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12 	ENST00000356641.3|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr18_+_59854480_59854551	0.00457978	AGCUUAU	ENST00000256858.6|KIAA1468|ENSG00000134444.9|KIAA1468 	ENST00000398130.2|KIAA1468|ENSG00000134444.9|KIAA1468
hg19_v2_chr4_+_124320665_124320702	0.00420477	AGCUUAU	ENST00000394339.2|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chr16_-_4292071_4292088	0.00415925	AGCUUAU	ENST00000399609.3|SRL|ENSG00000185739.9|sarcalumenin
hg19_v2_chr1_+_39456895_39456986	0.00388556	AGCUUAU	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr17_+_36452989_36453152	0.00384342	AGCUUAU	ENST00000312513.5|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45 	ENST00000582535.1|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45
hg19_v2_chr10_-_119134918_119134986	0.00382966	AGCUUAU	ENST00000334464.5|PDZD8|ENSG00000165650.7|PDZ domain containing 8
hg19_v2_chr15_-_102029873_102029917	0.00344514	AGCUUAU	ENST00000348070.1|PCSK6|ENSG00000140479.12|proprotein convertase subtilisin/kexin type 6 	ENST00000358417.3|PCSK6|ENSG00000140479.12|proprotein convertase subtilisin/kexin type 6 	ENST00000344273.2|PCSK6|ENSG00000140479.12|proprotein convertase subtilisin/kexin type 6
hg19_v2_chr3_-_107809816_107809885	0.00301798	AGCUUAU	ENST00000361309.5|CD47|ENSG00000196776.10|CD47 molecule 	ENST00000355354.7|CD47|ENSG00000196776.10|CD47 molecule
hg19_v2_chr3_-_18466787_18466861	0.0024546	AGCUUAU	ENST00000338745.6|SATB1|ENSG00000182568.12|SATB homeobox 1 	ENST00000450898.1|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr16_+_22019404_22019604	0.0023537	AGCUUAU	ENST00000542527.2|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000569656.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000562695.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52
hg19_v2_chr4_+_81951957_81952119	0.00224935	AGCUUAU	ENST00000282701.2|BMP3|ENSG00000152785.6|bone morphogenetic protein 3
hg19_v2_chr14_+_29234870_29235050	0.00175353	AGCUUAU	ENST00000382535.3|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr8_+_9413410_9413451	0.00170447	AGCUUAU	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr3_-_160283348_160283376	0.0015494	AGCUUAU	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr8_+_56014949_56015048	0.000943629	AGCUUAU	ENST00000327381.6|XKR4|ENSG00000206579.7|XK, Kell blood group complex subunit-related family, member 4
hg19_v2_chr17_+_61627814_61627871	0.000274482	AGCUUAU	ENST00000310827.4|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000431926.1|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000415273.2|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7
hg19_v2_chr9_+_133971909_133971943	6.53257e-05	AGCUUAU	ENST00000247291.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372302.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372300.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372298.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chrX_-_54384425_54384495	5.8355e-05	AGCUUAU	ENST00000375169.3|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3 	ENST00000354646.2|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3
