hg19_v2_chr17_-_4269768_4269835	0.417553	ACAGUAU	ENST00000396981.2|UBE2G1|ENSG00000132388.8|ubiquitin-conjugating enzyme E2G 1
hg19_v2_chr6_+_122720681_122720713	0.393113	ACAGUAU	ENST00000368455.4|HSF2|ENSG00000025156.8|heat shock transcription factor 2 	ENST00000452194.1|HSF2|ENSG00000025156.8|heat shock transcription factor 2
hg19_v2_chr3_-_101232019_101232085	0.347241	ACAGUAU	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr10_+_5454505_5454540	0.342601	ACAGUAU	ENST00000355029.4|NET1|ENSG00000173848.14|neuroepithelial cell transforming 1
hg19_v2_chr6_+_126112001_126112062	0.3257	ACAGUAU	ENST00000392477.2|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr15_+_52311398_52311461	0.301661	ACAGUAU	ENST00000261845.5|MAPK6|ENSG00000069956.7|mitogen-activated protein kinase 6
hg19_v2_chr15_-_49447835_49447858	0.286749	ACAGUAU	ENST00000388901.5|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000299259.6|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chr4_+_56815102_56815147	0.286444	ACAGUAU	ENST00000257287.4|CEP135|ENSG00000174799.6|centrosomal protein 135kDa
hg19_v2_chr8_+_136469684_136469710	0.28052	ACAGUAU	ENST00000355849.5|KHDRBS3|ENSG00000131773.9|KH domain containing, RNA binding, signal transduction associated 3
hg19_v2_chr5_+_134181625_134181713	0.276476	ACAGUAU	ENST00000394976.3|C5orf24|ENSG00000181904.8|chromosome 5 open reading frame 24
hg19_v2_chrX_-_108976521_108976632	0.273523	ACAGUAU	ENST00000469796.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000502391.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000508092.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000340800.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000348502.6|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4
hg19_v2_chr4_-_80994210_80994284	0.272489	ACAGUAU	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr8_-_119634141_119634234	0.270866	ACAGUAU	ENST00000409003.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526328.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000314727.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526765.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12
hg19_v2_chr13_-_48575443_48575464	0.270393	ACAGUAU	ENST00000378654.3|SUCLA2|ENSG00000136143.9|succinate-CoA ligase, ADP-forming, beta subunit
hg19_v2_chr11_-_95522907_95522989	0.269092	ACAGUAU	ENST00000358780.5|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B 	ENST00000542135.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr1_-_95392635_95392834	0.266702	ACAGUAU	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr5_+_52776228_52776245	0.262738	ACAGUAU	ENST00000256759.3|FST|ENSG00000134363.7|follistatin
hg19_v2_chr11_-_82782861_82782949	0.261596	ACAGUAU	ENST00000524635.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000526205.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000527633.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533486.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533276.2|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr2_-_11484710_11484812	0.251059	ACAGUAU	ENST00000315872.6|ROCK2|ENSG00000134318.9|Rho-associated, coiled-coil containing protein kinase 2
hg19_v2_chr2_+_46926048_46926095	0.238906	ACAGUAU	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr8_-_41166953_41167016	0.237073	ACAGUAU	ENST00000220772.3|SFRP1|ENSG00000104332.7|secreted frizzled-related protein 1
hg19_v2_chr9_+_78505581_78505621	0.232234	ACAGUAU	ENST00000376767.3|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5 	ENST00000376752.4|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5
hg19_v2_chr5_+_65018017_65018088	0.232191	ACAGUAU	ENST00000380985.5|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family) 	ENST00000502464.1|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family)
hg19_v2_chr4_+_144257915_144258009	0.219517	ACAGUAU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr6_+_17281573_17281605	0.212489	ACAGUAU	ENST00000379052.5|RBM24|ENSG00000112183.10|RNA binding motif protein 24
hg19_v2_chr10_+_60094735_60094749	0.205131	ACAGUAU	ENST00000373910.4|UBE2D1|ENSG00000072401.10|ubiquitin-conjugating enzyme E2D 1
hg19_v2_chr2_+_201676256_201676323	0.204179	ACAGUAU	ENST00000452206.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000410110.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000409600.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr2_+_170590321_170590408	0.200601	ACAGUAU	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr2_-_178128528_178128574	0.1934	ACAGUAU	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr8_-_23712312_23712328	0.192724	ACAGUAU	ENST00000290271.2|STC1|ENSG00000159167.7|stanniocalcin 1
hg19_v2_chr18_-_18691739_18691812	0.190707	ACAGUAU	ENST00000399799.2|ROCK1|ENSG00000067900.6|Rho-associated, coiled-coil containing protein kinase 1
hg19_v2_chr6_-_139695757_139695795	0.190038	ACAGUAU	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr2_+_172778952_172779004	0.188531	ACAGUAU	ENST00000392584.1|HAT1|ENSG00000128708.8|histone acetyltransferase 1 	ENST00000264108.4|HAT1|ENSG00000128708.8|histone acetyltransferase 1
hg19_v2_chr20_-_61493115_61493187	0.188288	ACAGUAU	ENST00000335351.3|TCFL5|ENSG00000101190.8|transcription factor-like 5 (basic helix-loop-helix) 	ENST00000217162.5|TCFL5|ENSG00000101190.8|transcription factor-like 5 (basic helix-loop-helix)
hg19_v2_chr3_+_67048721_67048760	0.187318	ACAGUAU	ENST00000295568.4|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8 	ENST00000484414.1|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8 	ENST00000460576.1|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8 	ENST00000417314.2|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8
hg19_v2_chr2_-_37193606_37193633	0.178209	ACAGUAU	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chr1_-_242687676_242687820	0.177833	ACAGUAU	ENST00000536534.2|PLD5|ENSG00000180287.12|phospholipase D family, member 5
hg19_v2_chr7_+_6144514_6144614	0.172382	ACAGUAU	ENST00000306177.5|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42 	ENST00000465073.2|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42
hg19_v2_chr8_+_61429416_61429502	0.170053	ACAGUAU	ENST00000262646.7|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family 	ENST00000531289.1|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family
hg19_v2_chr18_+_57567180_57567248	0.169628	ACAGUAU	ENST00000316660.6|PMAIP1|ENSG00000141682.11|phorbol-12-myristate-13-acetate-induced protein 1 	ENST00000269518.9|PMAIP1|ENSG00000141682.11|phorbol-12-myristate-13-acetate-induced protein 1
hg19_v2_chr7_-_82073109_82073150	0.1682	ACAGUAU	ENST00000356860.3|CACNA2D1|ENSG00000153956.11|calcium channel, voltage-dependent, alpha 2/delta subunit 1
hg19_v2_chr8_-_95908902_95908927	0.167828	ACAGUAU	ENST00000520509.1|CCNE2|ENSG00000175305.12|cyclin E2
hg19_v2_chr6_+_64281906_64281922	0.164625	ACAGUAU	ENST00000370651.3|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr8_+_26149007_26149061	0.164546	ACAGUAU	ENST00000380737.3|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha 	ENST00000524169.1|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha
hg19_v2_chr7_-_139876812_139876860	0.162267	ACAGUAU	ENST00000397560.2|JHDM1D|ENSG00000006459.6|lysine (K)-specific demethylase 7A
hg19_v2_chr16_-_12009735_12009793	0.161625	ACAGUAU	ENST00000439887.2|GSPT1|ENSG00000103342.8|G1 to S phase transition 1 	ENST00000434724.2|GSPT1|ENSG00000103342.8|G1 to S phase transition 1
hg19_v2_chr8_+_79578282_79578334	0.159439	ACAGUAU	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr13_-_77601282_77601308	0.158782	ACAGUAU	ENST00000355619.5|FBXL3|ENSG00000005812.6|F-box and leucine-rich repeat protein 3
hg19_v2_chr10_+_27793197_27793247	0.157013	ACAGUAU	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr3_-_195808952_195808972	0.156495	ACAGUAU	ENST00000540528.1|TFRC|ENSG00000072274.8|transferrin receptor 	ENST00000392396.3|TFRC|ENSG00000072274.8|transferrin receptor 	ENST00000535031.1|TFRC|ENSG00000072274.8|transferrin receptor 	ENST00000420415.1|TFRC|ENSG00000072274.8|transferrin receptor
hg19_v2_chr18_-_19180681_19180711	0.153936	ACAGUAU	ENST00000269214.5|ESCO1|ENSG00000141446.6|establishment of sister chromatid cohesion N-acetyltransferase 1
hg19_v2_chr15_-_79383102_79383127	0.151936	ACAGUAU	ENST00000558480.2|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1 	ENST00000419573.3|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1
hg19_v2_chr6_+_42749759_42749780	0.151216	ACAGUAU	ENST00000314073.5|GLTSCR1L|ENSG00000112624.8|GLTSCR1-like
hg19_v2_chr10_-_46167722_46167926	0.150981	ACAGUAU	ENST00000374366.3|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4 	ENST00000344646.5|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4
hg19_v2_chrX_-_135056216_135056227	0.14805	ACAGUAU	ENST00000305963.2|MMGT1|ENSG00000169446.4|membrane magnesium transporter 1
hg19_v2_chr1_+_112162381_112162431	0.14367	ACAGUAU	ENST00000433097.1|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000369709.3|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000436150.2|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family
hg19_v2_chr20_-_14318248_14318264	0.140725	ACAGUAU	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr2_-_37899323_37899374	0.140668	ACAGUAU	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr5_-_108745689_108745712	0.140356	ACAGUAU	ENST00000361189.2|PJA2|ENSG00000198961.5|praja ring finger 2, E3 ubiquitin protein ligase
hg19_v2_chr19_+_45973120_45973171	0.137319	ACAGUAU	ENST00000592811.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000586615.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chrX_+_51486481_51486549	0.137019	ACAGUAU	ENST00000340438.4|GSPT2|ENSG00000189369.7|G1 to S phase transition 2
hg19_v2_chr8_-_60031762_60031803	0.136507	ACAGUAU	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr14_-_81687197_81687280	0.136238	ACAGUAU	ENST00000553612.1|GTF2A1|ENSG00000165417.7|general transcription factor IIA, 1, 19/37kDa
hg19_v2_chr10_-_27529716_27529756	0.136053	ACAGUAU	ENST00000375897.3|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000396271.3|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr2_-_24583168_24583179	0.134397	ACAGUAU	ENST00000361999.3|ITSN2|ENSG00000198399.10|intersectin 2
hg19_v2_chr4_-_103748880_103749047	0.133623	ACAGUAU	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chr21_-_43430440_43430496	0.132748	ACAGUAU	ENST00000398505.3|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000310826.5|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000449949.1|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000398499.1|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000398497.2|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000398511.3|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21
hg19_v2_chr9_-_117880477_117880536	0.132136	ACAGUAU	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr15_-_48470558_48470714	0.131677	ACAGUAU	ENST00000324324.7|MYEF2|ENSG00000104177.13|myelin expression factor 2
hg19_v2_chr9_+_4985228_4985245	0.131134	ACAGUAU	ENST00000381652.3|JAK2|ENSG00000096968.8|Janus kinase 2
hg19_v2_chr15_-_75744014_75744087	0.13018	ACAGUAU	ENST00000394947.3|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000565264.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A
hg19_v2_chr3_+_99357319_99357454	0.128364	ACAGUAU	ENST00000452013.1|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000261037.3|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000273342.4|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1
hg19_v2_chrX_-_131352152_131352204	0.127786	ACAGUAU	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chr14_-_53162361_53162513	0.127535	ACAGUAU	ENST00000395686.3|ERO1L|ENSG00000197930.8|ERO1-like (S. cerevisiae)
hg19_v2_chr1_-_85156216_85156240	0.126563	ACAGUAU	ENST00000342203.3|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein 	ENST00000370612.4|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein
hg19_v2_chr14_-_52535712_52535753	0.126478	ACAGUAU	ENST00000216286.5|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen) 	ENST00000541773.1|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen)
hg19_v2_chr13_-_41240717_41240735	0.126339	ACAGUAU	ENST00000379561.5|FOXO1|ENSG00000150907.6|forkhead box O1
hg19_v2_chr22_+_31892373_31892556	0.126283	ACAGUAU	ENST00000443011.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400289.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000444859.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400288.2|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chrX_-_41782249_41782287	0.126093	ACAGUAU	ENST00000442742.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000421587.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000378166.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000318588.9|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000361962.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr10_+_31608054_31608156	0.124798	ACAGUAU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr5_-_90679145_90679176	0.124194	ACAGUAU	ENST00000265138.3|ARRDC3|ENSG00000113369.4|arrestin domain containing 3
hg19_v2_chr2_+_198380289_198380305	0.123266	ACAGUAU	ENST00000233892.4|MOB4|ENSG00000115540.10|MOB family member 4, phocein 	ENST00000409916.1|MOB4|ENSG00000115540.10|MOB family member 4, phocein
hg19_v2_chr10_+_76586348_76586400	0.123142	ACAGUAU	ENST00000372724.1|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B 	ENST00000287239.4|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B 	ENST00000372714.1|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B
hg19_v2_chr2_+_226265364_226265364	0.121247	ACAGUAU	ENST00000272907.6|NYAP2|ENSG00000144460.10|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2
hg19_v2_chr2_+_60983361_60983418	0.121167	ACAGUAU	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr1_+_76540386_76540445	0.121067	ACAGUAU	ENST00000328299.3|ST6GALNAC3|ENSG00000184005.9|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
hg19_v2_chr15_-_35280426_35280503	0.120031	ACAGUAU	ENST00000559564.1|ZNF770|ENSG00000198146.4|zinc finger protein 770 	ENST00000356321.4|ZNF770|ENSG00000198146.4|zinc finger protein 770
hg19_v2_chr2_-_179343268_179343338	0.116128	ACAGUAU	ENST00000424785.2|FKBP7|ENSG00000079150.13|FK506 binding protein 7
hg19_v2_chr21_-_46238034_46238051	0.116022	ACAGUAU	ENST00000332859.6|SUMO3|ENSG00000184900.11|small ubiquitin-like modifier 3
hg19_v2_chr5_-_40755987_40756077	0.114424	ACAGUAU	ENST00000337702.4|TTC33|ENSG00000113638.8|tetratricopeptide repeat domain 33
hg19_v2_chr13_-_50367057_50367142	0.113605	ACAGUAU	ENST00000261667.3|KPNA3|ENSG00000102753.5|karyopherin alpha 3 (importin alpha 4)
hg19_v2_chr5_-_59189545_59189625	0.109891	ACAGUAU	ENST00000340635.6|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr14_-_53619816_53620056	0.107755	ACAGUAU	ENST00000323669.5|DDHD1|ENSG00000100523.10|DDHD domain containing 1 	ENST00000395606.1|DDHD1|ENSG00000100523.10|DDHD domain containing 1 	ENST00000357758.3|DDHD1|ENSG00000100523.10|DDHD domain containing 1
hg19_v2_chrX_-_119694538_119694555	0.107261	ACAGUAU	ENST00000371322.5|CUL4B|ENSG00000158290.12|cullin 4B
hg19_v2_chr12_+_27485823_27485868	0.107168	ACAGUAU	ENST00000395901.2|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2 	ENST00000546179.1|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2
hg19_v2_chr1_-_78148324_78148365	0.105982	ACAGUAU	ENST00000370801.3|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000433749.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr10_-_91403625_91403649	0.104842	ACAGUAU	ENST00000322191.6|PANK1|ENSG00000152782.12|pantothenate kinase 1 	ENST00000342512.3|PANK1|ENSG00000152782.12|pantothenate kinase 1 	ENST00000371774.2|PANK1|ENSG00000152782.12|pantothenate kinase 1
hg19_v2_chr8_-_67525473_67525518	0.104337	ACAGUAU	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr17_+_1733276_1733321	0.103786	ACAGUAU	ENST00000254719.5|RPA1|ENSG00000132383.7|replication protein A1, 70kDa
hg19_v2_chr13_+_49550015_49550070	0.103678	ACAGUAU	ENST00000492622.2|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr5_-_95297678_95297775	0.103159	ACAGUAU	ENST00000237853.4|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr14_-_31495569_31495636	0.1031	ACAGUAU	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr10_+_88516396_88516426	0.102275	ACAGUAU	ENST00000372037.3|BMPR1A|ENSG00000107779.7|bone morphogenetic protein receptor, type IA
hg19_v2_chr11_+_9685604_9685706	0.101987	ACAGUAU	ENST00000447399.2|SWAP70|ENSG00000133789.10|SWAP switching B-cell complex 70kDa subunit 	ENST00000318950.6|SWAP70|ENSG00000133789.10|SWAP switching B-cell complex 70kDa subunit
hg19_v2_chr3_+_105085734_105085760	0.101783	ACAGUAU	ENST00000306107.5|ALCAM|ENSG00000170017.8|activated leukocyte cell adhesion molecule
hg19_v2_chr16_-_47177874_47177922	0.101629	ACAGUAU	ENST00000562435.1|NETO2|ENSG00000171208.5|neuropilin (NRP) and tolloid (TLL)-like 2
hg19_v2_chr9_-_14693417_14693469	0.100478	ACAGUAU	ENST00000380916.4|ZDHHC21|ENSG00000175893.7|zinc finger, DHHC-type containing 21
hg19_v2_chr20_+_39657454_39657470	0.10042	ACAGUAU	ENST00000361337.2|TOP1|ENSG00000198900.5|topoisomerase (DNA) I
hg19_v2_chr2_-_225450013_225450068	0.100353	ACAGUAU	ENST00000264414.4|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr12_+_50135588_50135605	0.100198	ACAGUAU	ENST00000423828.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6 	ENST00000550445.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6
hg19_v2_chr11_+_33278811_33279133	0.0993601	ACAGUAU	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr13_-_107187462_107187462	0.0990682	ACAGUAU	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr19_-_31840438_31840470	0.0978021	ACAGUAU	ENST00000240587.4|TSHZ3|ENSG00000121297.6|teashirt zinc finger homeobox 3
hg19_v2_chr10_+_95256356_95256408	0.097005	ACAGUAU	ENST00000371485.3|CEP55|ENSG00000138180.11|centrosomal protein 55kDa
hg19_v2_chr11_+_14665263_14665274	0.0966848	ACAGUAU	ENST00000282096.4|PDE3B|ENSG00000152270.4|phosphodiesterase 3B, cGMP-inhibited
hg19_v2_chr5_-_38595498_38595514	0.0964422	ACAGUAU	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr4_+_6784401_6784510	0.0963917	ACAGUAU	ENST00000425103.1|KIAA0232|ENSG00000170871.7|KIAA0232 	ENST00000307659.5|KIAA0232|ENSG00000170871.7|KIAA0232
hg19_v2_chr5_-_56247935_56247959	0.095798	ACAGUAU	ENST00000381199.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381226.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381213.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3
hg19_v2_chr20_+_61427797_61427863	0.0951369	ACAGUAU	ENST00000370487.3|MRGBP|ENSG00000101189.5|MRG/MORF4L binding protein
hg19_v2_chr1_+_101361626_101361698	0.0947581	ACAGUAU	ENST00000370112.4|SLC30A7|ENSG00000162695.7|solute carrier family 30 (zinc transporter), member 7
hg19_v2_chr7_+_116139424_116139444	0.0944819	ACAGUAU	ENST00000222693.4|CAV2|ENSG00000105971.10|caveolin 2
hg19_v2_chr5_+_77656339_77656362	0.0938938	ACAGUAU	ENST00000538629.1|SCAMP1|ENSG00000085365.13|secretory carrier membrane protein 1
hg19_v2_chr9_-_125590818_125590910	0.0930312	ACAGUAU	ENST00000259467.4|PDCL|ENSG00000136940.9|phosducin-like
hg19_v2_chr21_+_37692481_37692558	0.0929863	ACAGUAU	ENST00000400485.1|MORC3|ENSG00000159256.8|MORC family CW-type zinc finger 3
hg19_v2_chr6_-_13711773_13711796	0.0925784	ACAGUAU	ENST00000011619.3|RANBP9|ENSG00000010017.9|RAN binding protein 9
hg19_v2_chr7_-_131241361_131241398	0.0925581	ACAGUAU	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chrX_+_103411189_103411301	0.092539	ACAGUAU	ENST00000493442.1|FAM199X|ENSG00000123575.8|family with sequence similarity 199, X-linked
hg19_v2_chr17_+_16593539_16593639	0.0922196	ACAGUAU	ENST00000340621.5|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000399273.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000443444.2|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000360524.8|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000456009.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A
hg19_v2_chr1_-_31538517_31538632	0.0916567	ACAGUAU	ENST00000440538.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000423018.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000424085.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000426105.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000257075.5|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373747.3|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000525843.1|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373742.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1
hg19_v2_chr12_+_95611516_95611527	0.0912436	ACAGUAU	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr16_-_22385901_22385947	0.0911129	ACAGUAU	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr12_-_76425368_76425384	0.0908005	ACAGUAU	ENST00000602540.1|PHLDA1|ENSG00000139289.9|pleckstrin homology-like domain, family A, member 1
hg19_v2_chr6_+_150920999_150921062	0.0894848	ACAGUAU	ENST00000367328.1|PLEKHG1|ENSG00000120278.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 1 	ENST00000367326.1|PLEKHG1|ENSG00000120278.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
hg19_v2_chr3_+_88188254_88188254	0.0894007	ACAGUAU	ENST00000309495.5|ZNF654|ENSG00000175105.5|zinc finger protein 654
hg19_v2_chr1_-_243418344_243418356	0.089079	ACAGUAU	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr17_-_58469474_58469511	0.0890531	ACAGUAU	ENST00000300896.4|USP32|ENSG00000170832.8|ubiquitin specific peptidase 32
hg19_v2_chr2_-_180129484_180129574	0.087881	ACAGUAU	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr5_-_40798263_40798300	0.0873078	ACAGUAU	ENST00000296800.4|PRKAA1|ENSG00000132356.7|protein kinase, AMP-activated, alpha 1 catalytic subunit 	ENST00000397128.2|PRKAA1|ENSG00000132356.7|protein kinase, AMP-activated, alpha 1 catalytic subunit
hg19_v2_chr15_+_38544476_38544574	0.0871451	ACAGUAU	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr20_-_47804894_47804912	0.0868858	ACAGUAU	ENST00000371828.3|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371856.2|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000360426.4|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000347458.5|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000340954.7|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371802.1|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371792.1|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000437404.2|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1
hg19_v2_chr1_+_229406847_229406935	0.0868098	ACAGUAU	ENST00000366690.4|RAB4A|ENSG00000168118.7|RAB4A, member RAS oncogene family
hg19_v2_chr12_+_69004619_69004699	0.0867124	ACAGUAU	ENST00000250559.9|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000393436.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000425247.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000489473.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000422358.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000541167.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538283.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000341355.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000537460.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000450214.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000545270.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538980.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000542018.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000543393.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family
hg19_v2_chr21_-_27542972_27543138	0.086645	ACAGUAU	ENST00000346798.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000439274.2|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000354192.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000348990.5|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000357903.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000358918.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000359726.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr3_-_88108192_88108203	0.0865667	ACAGUAU	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr1_-_225840747_225840860	0.0865037	ACAGUAU	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr3_+_141106643_141106681	0.0865002	ACAGUAU	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr2_+_45878790_45878913	0.0864924	ACAGUAU	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chr8_+_125486939_125487026	0.0857573	ACAGUAU	ENST00000303545.3|RNF139|ENSG00000170881.4|ring finger protein 139
hg19_v2_chr10_+_60272814_60272900	0.0856089	ACAGUAU	ENST00000373886.3|BICC1|ENSG00000122870.7|bicaudal C homolog 1 (Drosophila)
hg19_v2_chr1_-_235491462_235491534	0.0855152	ACAGUAU	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr7_+_116312411_116312502	0.0853272	ACAGUAU	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr8_-_42397037_42397121	0.0845029	ACAGUAU	ENST00000342228.3|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr10_+_98592009_98592061	0.0843822	ACAGUAU	ENST00000540664.1|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor 	ENST00000371103.3|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor
hg19_v2_chr16_+_66400533_66400545	0.0840092	ACAGUAU	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr5_+_86564739_86564791	0.0836837	ACAGUAU	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr8_-_92053212_92053292	0.0836676	ACAGUAU	ENST00000285419.3|TMEM55A|ENSG00000155099.3|transmembrane protein 55A
hg19_v2_chr6_+_87865262_87865339	0.0823215	ACAGUAU	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr5_-_132073210_132073330	0.0815221	ACAGUAU	ENST00000378735.1|KIF3A|ENSG00000131437.11|kinesin family member 3A 	ENST00000378746.4|KIF3A|ENSG00000131437.11|kinesin family member 3A
hg19_v2_chr3_+_150804676_150804697	0.0802643	ACAGUAU	ENST00000474524.1|MED12L|ENSG00000144893.8|mediator complex subunit 12-like 	ENST00000273432.4|MED12L|ENSG00000144893.8|mediator complex subunit 12-like
hg19_v2_chr22_-_44258360_44258402	0.0798864	ACAGUAU	ENST00000330884.4|SULT4A1|ENSG00000130540.9|sulfotransferase family 4A, member 1 	ENST00000249130.5|SULT4A1|ENSG00000130540.9|sulfotransferase family 4A, member 1
hg19_v2_chr5_-_132299313_132299334	0.0798308	ACAGUAU	ENST00000265343.5|AFF4|ENSG00000072364.8|AF4/FMR2 family, member 4
hg19_v2_chr1_+_113161778_113161820	0.0797787	ACAGUAU	ENST00000263168.3|CAPZA1|ENSG00000116489.8|capping protein (actin filament) muscle Z-line, alpha 1
hg19_v2_chr1_+_87170247_87170276	0.0793934	ACAGUAU	ENST00000370558.4|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr15_-_65809581_65809617	0.0791848	ACAGUAU	ENST00000341861.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr6_-_86352642_86352709	0.0786682	ACAGUAU	ENST00000355238.6|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr7_-_75988321_75988348	0.0785833	ACAGUAU	ENST00000307630.3|YWHAG|ENSG00000170027.5|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma
hg19_v2_chr3_-_98620500_98620547	0.0783173	ACAGUAU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr4_+_108745711_108745726	0.0782072	ACAGUAU	ENST00000394684.4|SGMS2|ENSG00000164023.10|sphingomyelin synthase 2
hg19_v2_chr1_+_26798955_26799010	0.0781486	ACAGUAU	ENST00000361427.5|HMGN2|ENSG00000198830.6|high mobility group nucleosomal binding domain 2
hg19_v2_chr3_+_37284668_37284771	0.0774787	ACAGUAU	ENST00000361924.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000444882.1|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000356847.4|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000450863.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000429018.1|GOLGA4|ENSG00000144674.12|golgin A4
hg19_v2_chr14_-_61190754_61190852	0.0773099	ACAGUAU	ENST00000216513.4|SIX4|ENSG00000100625.8|SIX homeobox 4
hg19_v2_chr13_+_26828275_26828312	0.0772379	ACAGUAU	ENST00000381527.3|CDK8|ENSG00000132964.7|cyclin-dependent kinase 8
hg19_v2_chr10_+_120789223_120789231	0.0772248	ACAGUAU	ENST00000425699.1|NANOS1|ENSG00000188613.5|nanos homolog 1 (Drosophila)
hg19_v2_chr19_+_34663397_34663473	0.0772077	ACAGUAU	ENST00000540746.2|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000544216.3|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000433627.5|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr4_+_55524085_55524110	0.0771642	ACAGUAU	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr2_-_39348137_39348212	0.0770557	ACAGUAU	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr4_+_106816592_106816608	0.0770102	ACAGUAU	ENST00000379987.2|NPNT|ENSG00000168743.8|nephronectin 	ENST00000453617.2|NPNT|ENSG00000168743.8|nephronectin 	ENST00000427316.2|NPNT|ENSG00000168743.8|nephronectin 	ENST00000514622.1|NPNT|ENSG00000168743.8|nephronectin 	ENST00000305572.8|NPNT|ENSG00000168743.8|nephronectin
hg19_v2_chr11_+_32914579_32914724	0.0767786	ACAGUAU	ENST00000399302.2|QSER1|ENSG00000060749.10|glutamine and serine rich 1
hg19_v2_chr12_+_4430371_4430429	0.0766352	ACAGUAU	ENST00000179259.4|C12orf5|ENSG00000078237.4|chromosome 12 open reading frame 5
hg19_v2_chr2_-_65357225_65357267	0.0766212	ACAGUAU	ENST00000398529.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409751.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000356214.7|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409892.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409784.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family
hg19_v2_chr13_+_33160553_33160564	0.0763828	ACAGUAU	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr3_+_150321068_150321123	0.0763083	ACAGUAU	ENST00000471696.1|SELT|ENSG00000198843.8|Selenoprotein T  	ENST00000477889.1|SELT|ENSG00000198843.8|Selenoprotein T  	ENST00000485923.1|SELT|ENSG00000198843.8|Selenoprotein T
hg19_v2_chr3_-_171178157_171178225	0.0752821	ACAGUAU	ENST00000465393.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000436636.2|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000369326.5|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000538048.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000341852.6|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase
hg19_v2_chr8_-_74884511_74884546	0.0751829	ACAGUAU	ENST00000518127.1|TCEB1|ENSG00000154582.12|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
hg19_v2_chr5_+_142149955_142150000	0.0747316	ACAGUAU	ENST00000378004.3|ARHGAP26|ENSG00000145819.11|Rho GTPase activating protein 26
hg19_v2_chr3_+_152017181_152017229	0.0745471	ACAGUAU	ENST00000498502.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324196.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000545754.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000357472.3|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr5_+_61602055_61602083	0.0744026	ACAGUAU	ENST00000381103.2|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chrX_+_16737718_16737778	0.0739814	ACAGUAU	ENST00000380155.3|SYAP1|ENSG00000169895.5|synapse associated protein 1
hg19_v2_chr9_-_16870704_16870841	0.0739267	ACAGUAU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr1_-_174992544_174992576	0.0739162	ACAGUAU	ENST00000476371.1|MRPS14|ENSG00000120333.4|mitochondrial ribosomal protein S14
hg19_v2_chr7_-_120498357_120498456	0.073669	ACAGUAU	ENST00000415871.1|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000222747.3|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000430985.1|TSPAN12|ENSG00000106025.4|tetraspanin 12
hg19_v2_chr3_+_15247686_15247784	0.072786	ACAGUAU	ENST00000253693.2|CAPN7|ENSG00000131375.5|calpain 7
hg19_v2_chrX_+_146993449_146993498	0.0726941	ACAGUAU	ENST00000218200.8|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370471.3|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370477.1|FMR1|ENSG00000102081.9|fragile X mental retardation 1
hg19_v2_chr17_-_58603568_58603610	0.072577	ACAGUAU	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr2_+_14772810_14772853	0.072046	ACAGUAU	ENST00000295092.2|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A 	ENST00000331243.4|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A
hg19_v2_chr20_-_48770174_48770243	0.071551	ACAGUAU	ENST00000341698.2|TMEM189-UBE2V1|ENSG00000124208.16|TMEM189-UBE2V1 readthrough
hg19_v2_chr1_+_198126093_198126207	0.0715507	ACAGUAU	ENST00000367385.4|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000442588.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000538004.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7
hg19_v2_chr12_+_93965451_93965494	0.0712289	ACAGUAU	ENST00000548537.1|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr19_+_32836499_32836625	0.0709431	ACAGUAU	ENST00000311921.4|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000544431.1|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000355898.5|ZNF507|ENSG00000168813.12|zinc finger protein 507
hg19_v2_chr1_-_35395178_35395265	0.0702886	ACAGUAU	ENST00000373347.1|DLGAP3|ENSG00000116544.7|discs, large (Drosophila) homolog-associated protein 3
hg19_v2_chr1_-_26232951_26232959	0.0702471	ACAGUAU	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr7_+_104654623_104654669	0.0702087	ACAGUAU	ENST00000311117.3|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334877.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000257745.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334914.7|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000478990.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000495267.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000476671.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E
hg19_v2_chr16_-_46723066_46723121	0.0701752	ACAGUAU	ENST00000299138.7|VPS35|ENSG00000069329.11|vacuolar protein sorting 35 homolog (S. cerevisiae)
hg19_v2_chr6_+_71998506_71998522	0.0701303	ACAGUAU	ENST00000370435.4|OGFRL1|ENSG00000119900.7|opioid growth factor receptor-like 1
hg19_v2_chr14_+_73525144_73525224	0.0689131	ACAGUAU	ENST00000261973.7|RBM25|ENSG00000119707.9|RNA binding motif protein 25 	ENST00000540173.1|RBM25|ENSG00000119707.9|RNA binding motif protein 25
hg19_v2_chr11_-_95657231_95657459	0.0687609	ACAGUAU	ENST00000409459.1|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000352297.7|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000393223.3|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000346299.5|MTMR2|ENSG00000087053.14|myotubularin related protein 2
hg19_v2_chr1_+_203764742_203764834	0.0687534	ACAGUAU	ENST00000432282.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000453771.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367214.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367212.3|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000332127.4|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A
hg19_v2_chr7_+_107384142_107384173	0.0679696	ACAGUAU	ENST00000440859.3|CBLL1|ENSG00000105879.7|Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase
hg19_v2_chr15_+_49715293_49715448	0.0679613	ACAGUAU	ENST00000267843.4|FGF7|ENSG00000140285.5|fibroblast growth factor 7 	ENST00000560270.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr8_-_91095099_91095113	0.067877	ACAGUAU	ENST00000265431.3|CALB1|ENSG00000104327.3|calbindin 1, 28kDa
hg19_v2_chr11_-_86666427_86666450	0.0676997	ACAGUAU	ENST00000531380.1|FZD4|ENSG00000174804.3|frizzled family receptor 4
hg19_v2_chr9_+_4490394_4490446	0.0671569	ACAGUAU	ENST00000262352.3|SLC1A1|ENSG00000106688.7|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
hg19_v2_chr1_-_47697387_47697457	0.0666685	ACAGUAU	ENST00000371884.2|TAL1|ENSG00000162367.7|T-cell acute lymphocytic leukemia 1
hg19_v2_chr2_+_16080659_16080686	0.0663734	ACAGUAU	ENST00000281043.3|MYCN|ENSG00000134323.10|v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
hg19_v2_chr7_+_115850547_115850626	0.0655009	ACAGUAU	ENST00000358204.4|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000455989.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000537767.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains)
hg19_v2_chr20_-_56884489_56884515	0.0653185	ACAGUAU	ENST00000334187.8|PPP4R1L|ENSG00000124224.12|protein phosphatase 4, regulatory subunit 1-like 	ENST00000244070.3|PPP4R1L|ENSG00000124224.12|protein phosphatase 4, regulatory subunit 1-like
hg19_v2_chr18_+_9136758_9136852	0.064794	ACAGUAU	ENST00000383440.2|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000262126.4|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000577992.1|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12
hg19_v2_chr9_-_115095883_115095947	0.0646708	ACAGUAU	ENST00000450374.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374255.2|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000334318.6|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374257.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3
hg19_v2_chr5_+_74632993_74633028	0.0637447	ACAGUAU	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr9_+_112542572_112542590	0.0635557	ACAGUAU	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr6_+_64345698_64345750	0.0629463	ACAGUAU	ENST00000506783.1|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000481385.2|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000515594.1|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000494284.2|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000262043.3|PHF3|ENSG00000118482.7|PHD finger protein 3
hg19_v2_chr9_+_129622904_129622956	0.0626737	ACAGUAU	ENST00000319119.4|ZBTB34|ENSG00000177125.5|zinc finger and BTB domain containing 34
hg19_v2_chr5_+_139175380_139175431	0.0626447	ACAGUAU	ENST00000274710.3|PSD2|ENSG00000146005.3|pleckstrin and Sec7 domain containing 2
hg19_v2_chr7_-_149158187_149158214	0.0625831	ACAGUAU	ENST00000247930.4|ZNF777|ENSG00000196453.7|zinc finger protein 777
hg19_v2_chr10_-_126849068_126849138	0.0624805	ACAGUAU	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr12_-_42877764_42877803	0.0623	ACAGUAU	ENST00000455697.1|PRICKLE1|ENSG00000139174.6|prickle homolog 1 (Drosophila)
hg19_v2_chr8_-_53322303_53322340	0.0619674	ACAGUAU	ENST00000276480.7|ST18|ENSG00000147488.7|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
hg19_v2_chr5_+_172483347_172483407	0.0619007	ACAGUAU	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr1_+_193028552_193028589	0.0611035	ACAGUAU	ENST00000400968.2|TROVE2|ENSG00000116747.8|TROVE domain family, member 2 	ENST00000432079.1|TROVE2|ENSG00000116747.8|TROVE domain family, member 2
hg19_v2_chr16_-_53737795_53737850	0.0610637	ACAGUAU	ENST00000262135.4|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000564374.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000566096.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr17_-_35969409_35969544	0.061054	ACAGUAU	ENST00000394378.2|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000585472.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000591288.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000502449.2|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000345615.4|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000346661.4|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000585689.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000339208.6|SYNRG|ENSG00000006114.11|synergin, gamma
hg19_v2_chr5_+_98104978_98105010	0.0608233	ACAGUAU	ENST00000308234.7|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr8_-_37756972_37757022	0.0607227	ACAGUAU	ENST00000330843.4|RAB11FIP1|ENSG00000156675.11|RAB11 family interacting protein 1 (class I) 	ENST00000522727.1|RAB11FIP1|ENSG00000156675.11|RAB11 family interacting protein 1 (class I) 	ENST00000287263.4|RAB11FIP1|ENSG00000156675.11|RAB11 family interacting protein 1 (class I)
hg19_v2_chr10_-_13390270_13390316	0.0606311	ACAGUAU	ENST00000378614.4|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000545675.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000327347.5|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr6_+_13615554_13615601	0.0606088	ACAGUAU	ENST00000451315.2|NOL7|ENSG00000225921.2|nucleolar protein 7, 27kDa
hg19_v2_chr20_+_62795827_62795878	0.0604533	ACAGUAU	ENST00000328439.1|MYT1|ENSG00000196132.7|myelin transcription factor 1 	ENST00000536311.1|MYT1|ENSG00000196132.7|myelin transcription factor 1
hg19_v2_chr7_-_102985035_102985277	0.060074	ACAGUAU	ENST00000426036.2|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENST00000249270.7|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENST00000454277.1|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENST00000412522.1|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2
hg19_v2_chr14_-_99947168_99947232	0.0597588	ACAGUAU	ENST00000331768.5|SETD3|ENSG00000183576.8|SET domain containing 3
hg19_v2_chr2_+_238875597_238875724	0.0592527	ACAGUAU	ENST00000272930.4|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000448502.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000416292.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000409633.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000414443.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000409953.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000409332.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative)
hg19_v2_chr2_+_135676381_135676435	0.0592281	ACAGUAU	ENST00000537343.1|CCNT2|ENSG00000082258.8|cyclin T2 	ENST00000295238.6|CCNT2|ENSG00000082258.8|cyclin T2 	ENST00000264157.5|CCNT2|ENSG00000082258.8|cyclin T2
hg19_v2_chr8_-_42698433_42698486	0.0592175	ACAGUAU	ENST00000345117.2|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1 	ENST00000254250.3|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1
hg19_v2_chr4_-_129208940_129208976	0.0589954	ACAGUAU	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr1_-_169455169_169455241	0.0589151	ACAGUAU	ENST00000367804.4|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2 	ENST00000236137.5|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2
hg19_v2_chrX_-_51239425_51239453	0.0586319	ACAGUAU	ENST00000375992.3|NUDT11|ENSG00000196368.4|nudix (nucleoside diphosphate linked moiety X)-type motif 11
hg19_v2_chr18_+_9475668_9475698	0.0586187	ACAGUAU	ENST00000383432.3|RALBP1|ENSG00000017797.7|ralA binding protein 1
hg19_v2_chr11_+_129939779_129939801	0.0583493	ACAGUAU	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr7_-_6312206_6312308	0.0577909	ACAGUAU	ENST00000350796.3|CYTH3|ENSG00000008256.11|cytohesin 3
hg19_v2_chr3_+_36421826_36421844	0.0575665	ACAGUAU	ENST00000273183.3|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chr1_-_186649543_186649563	0.0567673	ACAGUAU	ENST00000367468.5|PTGS2|ENSG00000073756.7|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v2_chr11_+_9406169_9406210	0.0565623	ACAGUAU	ENST00000379719.3|IPO7|ENSG00000205339.5|importin 7 	ENST00000527431.1|IPO7|ENSG00000205339.5|importin 7
hg19_v2_chr1_-_93645818_93645918	0.0564841	ACAGUAU	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr7_+_21467642_21467671	0.0564748	ACAGUAU	ENST00000222584.3|SP4|ENSG00000105866.9|Sp4 transcription factor 	ENST00000432066.2|SP4|ENSG00000105866.9|Sp4 transcription factor
hg19_v2_chr15_+_77223960_77223994	0.0564407	ACAGUAU	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr10_+_17686124_17686192	0.0562464	ACAGUAU	ENST00000377524.3|STAM|ENSG00000136738.10|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
hg19_v2_chr1_+_193091080_193091222	0.0558849	ACAGUAU	ENST00000367435.3|CDC73|ENSG00000134371.9|cell division cycle 73
hg19_v2_chr10_-_115904361_115904375	0.0558678	ACAGUAU	ENST00000428953.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118 	ENST00000543782.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118
hg19_v2_chr17_+_54671047_54671075	0.0556852	ACAGUAU	ENST00000332822.4|NOG|ENSG00000183691.4|noggin
hg19_v2_chr2_+_208394616_208394655	0.0554486	ACAGUAU	ENST00000432329.2|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1 	ENST00000353267.3|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1 	ENST00000445803.1|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1
hg19_v2_chr10_-_128994422_128994422	0.0553735	ACAGUAU	ENST00000522781.1|FAM196A|ENSG00000188916.4|family with sequence similarity 196, member A
hg19_v2_chr18_-_61089665_61089733	0.0553376	ACAGUAU	ENST00000238497.5|VPS4B|ENSG00000119541.5|vacuolar protein sorting 4 homolog B (S. cerevisiae)
hg19_v2_chr1_-_225615599_225615802	0.0551851	ACAGUAU	ENST00000421383.1|LBR|ENSG00000143815.10|lamin B receptor 	ENST00000272163.4|LBR|ENSG00000143815.10|lamin B receptor
hg19_v2_chr3_-_141944398_141944465	0.0550152	ACAGUAU	ENST00000544571.1|GK5|ENSG00000175066.11|glycerol kinase 5 (putative) 	ENST00000392993.2|GK5|ENSG00000175066.11|glycerol kinase 5 (putative)
hg19_v2_chr9_+_27109133_27109187	0.0547192	ACAGUAU	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr6_-_8064567_8064652	0.0535222	ACAGUAU	ENST00000543936.1|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted 	ENST00000397457.2|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted
hg19_v2_chr7_+_138145076_138145116	0.0534329	ACAGUAU	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr16_-_65155833_65155976	0.0524908	ACAGUAU	ENST00000566827.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000394156.3|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000562998.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast)
hg19_v2_chr9_-_3525968_3526016	0.0524871	ACAGUAU	ENST00000382004.3|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000302303.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000449190.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression)
hg19_v2_chr14_+_99947715_99947791	0.0523278	ACAGUAU	ENST00000389879.5|CCNK|ENSG00000090061.13|cyclin K 	ENST00000557441.1|CCNK|ENSG00000090061.13|cyclin K 	ENST00000555049.1|CCNK|ENSG00000090061.13|cyclin K 	ENST00000555842.1|CCNK|ENSG00000090061.13|cyclin K
hg19_v2_chr5_-_126366500_126366547	0.0522118	ACAGUAU	ENST00000308660.5|MARCH3|ENSG00000173926.5|membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase
hg19_v2_chr12_+_56401268_56401443	0.0518591	ACAGUAU	ENST00000262032.5|IKZF4|ENSG00000123411.10|IKAROS family zinc finger 4 (Eos)
hg19_v2_chr6_+_163835669_163835693	0.0517628	ACAGUAU	ENST00000453779.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000275262.7|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000392127.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000361752.3|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding
hg19_v2_chr11_+_70116779_70116858	0.0510262	ACAGUAU	ENST00000253925.7|PPFIA1|ENSG00000131626.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 	ENST00000389547.3|PPFIA1|ENSG00000131626.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
hg19_v2_chr7_-_79082867_79082900	0.0509781	ACAGUAU	ENST00000419488.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2 	ENST00000354212.4|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr4_+_146402925_146402957	0.0507525	ACAGUAU	ENST00000302085.4|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr11_-_27494279_27494308	0.0503059	ACAGUAU	ENST00000379214.4|LGR4|ENSG00000205213.9|leucine-rich repeat containing G protein-coupled receptor 4
hg19_v2_chr2_+_85198216_85198305	0.0501454	ACAGUAU	ENST00000456682.1|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1 	ENST00000409785.4|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1
hg19_v2_chr11_+_69924397_69924449	0.0497726	ACAGUAU	ENST00000355303.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr16_+_50187556_50187779	0.049766	ACAGUAU	ENST00000561678.1|PAPD5|ENSG00000121274.8|PAP associated domain containing 5 	ENST00000357464.3|PAPD5|ENSG00000121274.8|PAP associated domain containing 5
hg19_v2_chr15_-_55881135_55881192	0.0493843	ACAGUAU	ENST00000302000.6|PYGO1|ENSG00000171016.7|pygopus family PHD finger 1
hg19_v2_chr12_-_120806960_120806985	0.0491112	ACAGUAU	ENST00000257552.2|MSI1|ENSG00000135097.2|musashi RNA-binding protein 1
hg19_v2_chr19_-_33555780_33555801	0.0490875	ACAGUAU	ENST00000254260.3|RHPN2|ENSG00000131941.3|rhophilin, Rho GTPase binding protein 2 	ENST00000400226.4|RHPN2|ENSG00000131941.3|rhophilin, Rho GTPase binding protein 2
hg19_v2_chr8_-_125384927_125384952	0.0490589	ACAGUAU	ENST00000297632.6|TMEM65|ENSG00000164983.6|transmembrane protein 65
hg19_v2_chr10_+_133753533_133753533	0.0488322	ACAGUAU	ENST00000422256.2|PPP2R2D|ENSG00000175470.14|protein phosphatase 2, regulatory subunit B, delta
hg19_v2_chrX_+_118708493_118708506	0.0485755	ACAGUAU	ENST00000371558.2|UBE2A|ENSG00000077721.11|ubiquitin-conjugating enzyme E2A
hg19_v2_chr6_-_130031358_130031378	0.0485004	ACAGUAU	ENST00000368149.2|ARHGAP18|ENSG00000146376.6|Rho GTPase activating protein 18
hg19_v2_chr5_+_65440032_65440099	0.0480317	ACAGUAU	ENST00000334121.6|SREK1|ENSG00000153914.11|splicing regulatory glutamine/lysine-rich protein 1
hg19_v2_chr11_-_94964354_94964374	0.0474352	ACAGUAU	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr17_-_38574169_38574202	0.0474266	ACAGUAU	ENST00000423485.1|TOP2A|ENSG00000131747.10|topoisomerase (DNA) II alpha 170kDa
hg19_v2_chr4_+_139936905_139936944	0.04735	ACAGUAU	ENST00000280614.2|CCRN4L|ENSG00000151014.4|CCR4 carbon catabolite repression 4-like (S. cerevisiae)
hg19_v2_chr6_-_82462425_82462491	0.0472905	ACAGUAU	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr22_+_50247449_50247515	0.0469949	ACAGUAU	ENST00000216268.5|ZBED4|ENSG00000100426.6|zinc finger, BED-type containing 4
hg19_v2_chr17_-_63052929_63052962	0.0468526	ACAGUAU	ENST00000439174.2|GNA13|ENSG00000120063.5|guanine nucleotide binding protein (G protein), alpha 13
hg19_v2_chr1_-_182573514_182573543	0.0466615	ACAGUAU	ENST00000367558.5|RGS16|ENSG00000143333.6|regulator of G-protein signaling 16
hg19_v2_chr5_-_89825328_89825422	0.0458858	ACAGUAU	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chr8_+_133787586_133787673	0.0455726	ACAGUAU	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr3_-_136471204_136471249	0.0452844	ACAGUAU	ENST00000480733.1|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000383202.2|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000236698.5|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000434713.2|STAG1|ENSG00000118007.8|stromal antigen 1
hg19_v2_chr9_-_85678043_85678092	0.0447961	ACAGUAU	ENST00000376447.3|RASEF|ENSG00000165105.9|RAS and EF-hand domain containing 	ENST00000340717.4|RASEF|ENSG00000165105.9|RAS and EF-hand domain containing
hg19_v2_chr2_-_68479614_68479685	0.044496	ACAGUAU	ENST00000234310.3|PPP3R1|ENSG00000221823.6|protein phosphatase 3, regulatory subunit B, alpha
hg19_v2_chr1_-_226374373_226374464	0.0444338	ACAGUAU	ENST00000366812.5|ACBD3|ENSG00000182827.8|acyl-CoA binding domain containing 3
hg19_v2_chr15_+_59279851_59279880	0.0443112	ACAGUAU	ENST00000348370.4|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000434298.1|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000559160.1|RNF111|ENSG00000157450.11|ring finger protein 111
hg19_v2_chr1_+_39456895_39456986	0.0440636	ACAGUAU	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr6_+_121756809_121756838	0.0439635	ACAGUAU	ENST00000282561.3|GJA1|ENSG00000152661.7|gap junction protein, alpha 1, 43kDa
hg19_v2_chr5_+_112043186_112043225	0.0438974	ACAGUAU	ENST00000509732.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000457016.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000507379.1|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr12_+_105501487_105501562	0.0437226	ACAGUAU	ENST00000332180.5|KIAA1033|ENSG00000136051.9|KIAA1033
hg19_v2_chr15_-_83316254_83316368	0.0428272	ACAGUAU	ENST00000567678.1|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1 	ENST00000450751.2|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1
hg19_v2_chr9_+_128509624_128509658	0.042093	ACAGUAU	ENST00000342287.5|PBX3|ENSG00000167081.12|pre-B-cell leukemia homeobox 3 	ENST00000373487.4|PBX3|ENSG00000167081.12|pre-B-cell leukemia homeobox 3
hg19_v2_chr1_+_200708671_200708744	0.0420316	ACAGUAU	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr7_-_93633684_93633695	0.0419911	ACAGUAU	ENST00000222547.3|BET1|ENSG00000105829.7|Bet1 golgi vesicular membrane trafficking protein 	ENST00000425626.1|BET1|ENSG00000105829.7|Bet1 golgi vesicular membrane trafficking protein
hg19_v2_chr3_-_69101413_69101457	0.0419169	ACAGUAU	ENST00000398559.2|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr7_-_148581251_148581347	0.0417739	ACAGUAU	ENST00000478654.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000460911.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000350995.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr15_+_44719394_44719579	0.0417265	ACAGUAU	ENST00000260327.4|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 	ENST00000396780.1|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
hg19_v2_chr14_-_21737610_21737653	0.0414872	ACAGUAU	ENST00000320084.7|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000449098.1|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000336053.6|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2)
hg19_v2_chr6_-_111804393_111804436	0.041392	ACAGUAU	ENST00000368802.3|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit 	ENST00000368805.1|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit
hg19_v2_chr17_-_49337392_49337465	0.0413293	ACAGUAU	ENST00000376381.2|MBTD1|ENSG00000011258.11|mbt domain containing 1 	ENST00000586178.1|MBTD1|ENSG00000011258.11|mbt domain containing 1
hg19_v2_chr15_-_48937982_48938046	0.0409517	ACAGUAU	ENST00000316623.5|FBN1|ENSG00000166147.9|fibrillin 1
hg19_v2_chr9_-_74525658_74525658	0.0409026	ACAGUAU	ENST00000333421.6|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr14_-_37642016_37642071	0.0405055	ACAGUAU	ENST00000331299.5|SLC25A21|ENSG00000183032.6|solute carrier family 25 (mitochondrial oxoadipate carrier), member 21
hg19_v2_chr1_-_47779762_47779827	0.040496	ACAGUAU	ENST00000371877.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000360380.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000337817.5|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000447475.2|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus
hg19_v2_chr2_-_161056802_161056815	0.0402375	ACAGUAU	ENST00000283249.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409872.1|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr12_+_104359576_104359601	0.0395698	ACAGUAU	ENST00000392872.3|TDG|ENSG00000139372.10|thymine-DNA glycosylase 	ENST00000436021.2|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chr2_-_135476552_135476576	0.0394251	ACAGUAU	ENST00000281924.6|TMEM163|ENSG00000152128.13|transmembrane protein 163
hg19_v2_chr3_-_52713729_52713784	0.0389524	ACAGUAU	ENST00000296302.7|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000356770.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000337303.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409057.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000410007.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409114.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409767.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000423351.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr12_-_30848914_30848948	0.0386431	ACAGUAU	ENST00000256079.4|IPO8|ENSG00000133704.5|importin 8
hg19_v2_chr14_+_29234870_29235050	0.0384875	ACAGUAU	ENST00000382535.3|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr2_-_183903133_183903210	0.0384574	ACAGUAU	ENST00000361354.4|NCKAP1|ENSG00000061676.10|NCK-associated protein 1
hg19_v2_chr17_-_65241281_65241326	0.0383766	ACAGUAU	ENST00000358691.5|HELZ|ENSG00000198265.7|helicase with zinc finger 	ENST00000580168.1|HELZ|ENSG00000198265.7|helicase with zinc finger
hg19_v2_chr18_+_60190226_60190314	0.0383738	ACAGUAU	ENST00000269499.5|ZCCHC2|ENSG00000141664.5|zinc finger, CCHC domain containing 2
hg19_v2_chr15_-_83876758_83876770	0.0383432	ACAGUAU	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr15_+_79724858_79724858	0.0382175	ACAGUAU	ENST00000305428.3|KIAA1024|ENSG00000169330.4|KIAA1024
hg19_v2_chr15_-_90645679_90645753	0.037729	ACAGUAU	ENST00000539790.1|IDH2|ENSG00000182054.5|isocitrate dehydrogenase 2 (NADP+), mitochondrial 	ENST00000559482.1|IDH2|ENSG00000182054.5|isocitrate dehydrogenase 2 (NADP+), mitochondrial 	ENST00000330062.3|IDH2|ENSG00000182054.5|isocitrate dehydrogenase 2 (NADP+), mitochondrial
hg19_v2_chr5_+_60628074_60628100	0.0374038	ACAGUAU	ENST00000252744.5|ZSWIM6|ENSG00000130449.5|zinc finger, SWIM-type containing 6
hg19_v2_chr15_-_30114622_30114706	0.03716	ACAGUAU	ENST00000495972.2|TJP1|ENSG00000104067.12|tight junction protein 1 	ENST00000346128.6|TJP1|ENSG00000104067.12|tight junction protein 1
hg19_v2_chr13_+_97874574_97874609	0.0368528	ACAGUAU	ENST00000343600.4|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000345429.6|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000376673.3|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chr9_+_112810878_112810985	0.0365384	ACAGUAU	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr4_+_144434584_144434709	0.0362078	ACAGUAU	ENST00000283131.3|SMARCA5|ENSG00000153147.5|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
hg19_v2_chr2_-_24149977_24150007	0.0360042	ACAGUAU	ENST00000238789.5|ATAD2B|ENSG00000119778.10|ATPase family, AAA domain containing 2B
hg19_v2_chr1_-_173991434_173991556	0.0358682	ACAGUAU	ENST00000367696.2|RC3H1|ENSG00000135870.7|ring finger and CCCH-type domains 1
hg19_v2_chr12_+_67663056_67663067	0.0358618	ACAGUAU	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr5_+_135468516_135468621	0.0356963	ACAGUAU	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr1_-_154842741_154842772	0.0356899	ACAGUAU	ENST00000271915.4|KCNN3|ENSG00000143603.14|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
hg19_v2_chr12_-_88974236_88974256	0.0346146	ACAGUAU	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr6_-_85474219_85474237	0.0345308	ACAGUAU	ENST00000369663.5|TBX18|ENSG00000112837.12|T-box 18
hg19_v2_chr16_+_86544113_86544145	0.034292	ACAGUAU	ENST00000262426.4|FOXF1|ENSG00000103241.5|forkhead box F1
hg19_v2_chr1_+_110091189_110091268	0.0341489	ACAGUAU	ENST00000369851.4|GNAI3|ENSG00000065135.7|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3
hg19_v2_chr16_-_19533404_19533467	0.0339506	ACAGUAU	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr3_+_130569429_130569479	0.0330828	ACAGUAU	ENST00000505330.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000504381.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000507488.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000393221.4|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr5_-_168006591_168006638	0.0329022	ACAGUAU	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr14_-_82000140_82000229	0.0326957	ACAGUAU	ENST00000555824.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000557372.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000336735.4|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans)
hg19_v2_chr2_+_71558858_71558936	0.0324527	ACAGUAU	ENST00000437658.2|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000355812.3|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000377802.2|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000264447.4|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000409544.1|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000455226.1|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000454278.1|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000417778.1|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000454122.1|ZNF638|ENSG00000075292.14|zinc finger protein 638
hg19_v2_chr3_+_23986748_23986761	0.0321265	ACAGUAU	ENST00000312521.4|NR1D2|ENSG00000174738.8|nuclear receptor subfamily 1, group D, member 2
hg19_v2_chr8_+_41348072_41348112	0.0319576	ACAGUAU	ENST00000405786.2|GOLGA7|ENSG00000147533.12|golgin A7
hg19_v2_chr13_+_20532807_20532841	0.0319492	ACAGUAU	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr3_-_138553594_138553684	0.0318561	ACAGUAU	ENST00000477593.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta 	ENST00000483968.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta
hg19_v2_chr8_-_81083731_81083813	0.0314887	ACAGUAU	ENST00000379096.5|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr18_-_21977748_21977823	0.0310528	ACAGUAU	ENST00000399441.4|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A 	ENST00000319481.3|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A
hg19_v2_chr6_+_161412759_161412846	0.0309507	ACAGUAU	ENST00000366919.2|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000392142.4|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000366920.2|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000348824.7|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4
hg19_v2_chr14_+_45431379_45431465	0.0299615	ACAGUAU	ENST00000361577.3|FAM179B|ENSG00000198718.8|family with sequence similarity 179, member B 	ENST00000361462.2|FAM179B|ENSG00000198718.8|family with sequence similarity 179, member B 	ENST00000382233.2|FAM179B|ENSG00000198718.8|family with sequence similarity 179, member B
hg19_v2_chr12_+_88536067_88536100	0.0296048	ACAGUAU	ENST00000549011.1|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3 	ENST00000266712.6|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3 	ENST00000551088.1|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3
hg19_v2_chr3_+_19988566_19988648	0.029295	ACAGUAU	ENST00000273047.4|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chr3_+_69812877_69812962	0.0292715	ACAGUAU	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr17_+_17942594_17942606	0.0291432	ACAGUAU	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr3_+_4535025_4535040	0.0291072	ACAGUAU	ENST00000302640.8|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000354582.6|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000423119.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000357086.4|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000456211.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr2_+_204192942_204193038	0.0285463	ACAGUAU	ENST00000295851.5|ABI2|ENSG00000138443.11|abl-interactor 2 	ENST00000261017.5|ABI2|ENSG00000138443.11|abl-interactor 2
hg19_v2_chrX_+_133507327_133507386	0.0283512	ACAGUAU	ENST00000332070.3|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000394292.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000370799.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000416404.2|PHF6|ENSG00000156531.12|PHD finger protein 6
hg19_v2_chr16_-_4323015_4323076	0.028217	ACAGUAU	ENST00000204517.6|TFAP4|ENSG00000090447.7|transcription factor AP-4 (activating enhancer binding protein 4)
hg19_v2_chr18_-_12657988_12658133	0.0276946	ACAGUAU	ENST00000410092.3|SPIRE1|ENSG00000134278.10|spire-type actin nucleation factor 1 	ENST00000409402.4|SPIRE1|ENSG00000134278.10|spire-type actin nucleation factor 1
hg19_v2_chr1_+_178694300_178694346	0.027693	ACAGUAU	ENST00000367635.3|RALGPS2|ENSG00000116191.13|Ral GEF with PH domain and SH3 binding motif 2
hg19_v2_chr1_+_110693103_110693126	0.0276338	ACAGUAU	ENST00000331565.4|SLC6A17|ENSG00000197106.6|solute carrier family 6 (neutral amino acid transporter), member 17
hg19_v2_chr18_-_23670546_23670605	0.0274677	ACAGUAU	ENST00000542743.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000545952.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000539849.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000415083.2|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18
hg19_v2_chr16_-_70719925_70719989	0.0273053	ACAGUAU	ENST00000338779.6|MTSS1L|ENSG00000132613.10|metastasis suppressor 1-like
hg19_v2_chr5_+_176560742_176560926	0.0270633	ACAGUAU	ENST00000439151.2|NSD1|ENSG00000165671.14|nuclear receptor binding SET domain protein 1
hg19_v2_chr4_+_95679072_95679125	0.0269104	ACAGUAU	ENST00000515059.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr11_+_33563821_33563877	0.0268693	ACAGUAU	ENST00000321505.4|KIAA1549L|ENSG00000110427.10|KIAA1549-like 	ENST00000265654.5|KIAA1549L|ENSG00000110427.10|KIAA1549-like 	ENST00000389726.3|KIAA1549L|ENSG00000110427.10|KIAA1549-like
hg19_v2_chr1_-_47184723_47184736	0.0266882	ACAGUAU	ENST00000371933.3|EFCAB14|ENSG00000159658.6|EF-hand calcium binding domain 14
hg19_v2_chr4_+_144106080_144106144	0.0265657	ACAGUAU	ENST00000307017.4|USP38|ENSG00000170185.5|ubiquitin specific peptidase 38
hg19_v2_chrX_+_102631248_102631335	0.0261694	ACAGUAU	ENST00000361298.4|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372645.3|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372635.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr8_-_110346614_110346722	0.0261411	ACAGUAU	ENST00000239690.4|NUDCD1|ENSG00000120526.6|NudC domain containing 1
hg19_v2_chr6_-_94129244_94129284	0.0260675	ACAGUAU	ENST00000369303.4|EPHA7|ENSG00000135333.9|EPH receptor A7 	ENST00000369297.1|EPHA7|ENSG00000135333.9|EPH receptor A7
hg19_v2_chrX_-_77041685_77041716	0.0256095	ACAGUAU	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr3_-_122233723_122233797	0.0255802	ACAGUAU	ENST00000493510.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000344337.6|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000476916.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000465882.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5)
hg19_v2_chrX_-_40594755_40594809	0.0251788	ACAGUAU	ENST00000324817.1|MED14|ENSG00000180182.6|mediator complex subunit 14
hg19_v2_chr6_-_90121938_90122025	0.0251338	ACAGUAU	ENST00000369415.4|RRAGD|ENSG00000025039.10|Ras-related GTP binding D
hg19_v2_chr12_-_109747023_109747033	0.024971	ACAGUAU	ENST00000355216.1|FOXN4|ENSG00000139445.13|forkhead box N4 	ENST00000299162.5|FOXN4|ENSG00000139445.13|forkhead box N4
hg19_v2_chr15_-_56209306_56209344	0.0248582	ACAGUAU	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr3_-_125094093_125094198	0.0246806	ACAGUAU	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr11_+_107879459_107879702	0.0241649	ACAGUAU	ENST00000393094.2|CUL5|ENSG00000166266.9|cullin 5
hg19_v2_chr14_-_64010046_64010107	0.0238468	ACAGUAU	ENST00000337537.3|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chr13_+_113622810_113622830	0.0238066	ACAGUAU	ENST00000397030.1|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr6_+_148663729_148663847	0.0237943	ACAGUAU	ENST00000367467.3|SASH1|ENSG00000111961.12|SAM and SH3 domain containing 1
hg19_v2_chr2_-_206950781_206950947	0.0237887	ACAGUAU	ENST00000403263.1|INO80D|ENSG00000114933.11|INO80 complex subunit D
hg19_v2_chr7_+_77469439_77469497	0.0236154	ACAGUAU	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr21_-_36260980_36261011	0.0232796	ACAGUAU	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr11_+_109964087_109964123	0.0232083	ACAGUAU	ENST00000278590.3|ZC3H12C|ENSG00000149289.6|zinc finger CCCH-type containing 12C
hg19_v2_chr12_-_31479045_31479074	0.0231773	ACAGUAU	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr16_-_74640986_74641022	0.0231558	ACAGUAU	ENST00000422840.2|GLG1|ENSG00000090863.7|golgi glycoprotein 1 	ENST00000565260.1|GLG1|ENSG00000090863.7|golgi glycoprotein 1 	ENST00000447066.2|GLG1|ENSG00000090863.7|golgi glycoprotein 1 	ENST00000205061.5|GLG1|ENSG00000090863.7|golgi glycoprotein 1
hg19_v2_chr5_+_139505520_139505523	0.0230876	ACAGUAU	ENST00000333305.3|IGIP|ENSG00000182700.3|IgA-inducing protein
hg19_v2_chr18_+_67956135_67956144	0.0229391	ACAGUAU	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr3_-_56835967_56835995	0.0228644	ACAGUAU	ENST00000495373.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3 	ENST00000296315.3|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr9_-_95527079_95527148	0.0225149	ACAGUAU	ENST00000356884.6|BICD2|ENSG00000185963.9|bicaudal D homolog 2 (Drosophila) 	ENST00000375512.3|BICD2|ENSG00000185963.9|bicaudal D homolog 2 (Drosophila)
hg19_v2_chr11_-_128392085_128392232	0.0220697	ACAGUAU	ENST00000526145.2|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000531611.1|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000319397.6|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000345075.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000535549.1|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr17_+_30677136_30677205	0.0220604	ACAGUAU	ENST00000394670.4|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000321233.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394673.2|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000341711.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000579634.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000580759.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000342555.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000577908.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394679.5|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000582165.1|ZNF207|ENSG00000010244.12|zinc finger protein 207
hg19_v2_chr10_+_115614370_115614436	0.0219148	ACAGUAU	ENST00000369301.3|NHLRC2|ENSG00000196865.4|NHL repeat containing 2
hg19_v2_chr6_+_168227611_168227813	0.0218002	ACAGUAU	ENST00000344191.4|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000351017.4|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000392108.3|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000366806.2|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000392112.1|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000400824.4|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000447894.2|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000400822.3|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
hg19_v2_chr2_-_47798044_47798132	0.0216598	ACAGUAU	ENST00000327876.4|KCNK12|ENSG00000184261.4|potassium channel, subfamily K, member 12
hg19_v2_chrX_-_19988382_19988416	0.0215476	ACAGUAU	ENST00000356980.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379687.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379682.4|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23
hg19_v2_chr5_+_141488070_141488094	0.0210964	ACAGUAU	ENST00000253814.4|NDFIP1|ENSG00000131507.9|Nedd4 family interacting protein 1
hg19_v2_chr2_+_160568978_160569064	0.0210381	ACAGUAU	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr3_-_119813264_119813272	0.0206617	ACAGUAU	ENST00000264235.8|GSK3B|ENSG00000082701.10|glycogen synthase kinase 3 beta
hg19_v2_chr6_-_100912785_100912822	0.0206096	ACAGUAU	ENST00000369208.3|SIM1|ENSG00000112246.5|single-minded family bHLH transcription factor 1
hg19_v2_chr7_+_55086794_55086811	0.0203496	ACAGUAU	ENST00000275493.2|EGFR|ENSG00000146648.11|epidermal growth factor receptor 	ENST00000442591.1|EGFR|ENSG00000146648.11|epidermal growth factor receptor
hg19_v2_chr6_+_167412665_167412698	0.0203138	ACAGUAU	ENST00000366847.4|FGFR1OP|ENSG00000213066.7|FGFR1 oncogene partner
hg19_v2_chr18_+_67068228_67068291	0.0198568	ACAGUAU	ENST00000382713.5|DOK6|ENSG00000206052.6|docking protein 6
hg19_v2_chrX_+_100474711_100474758	0.0198047	ACAGUAU	ENST00000402866.1|DRP2|ENSG00000102385.8|dystrophin related protein 2
hg19_v2_chr7_+_29234028_29234043	0.0193532	ACAGUAU	ENST00000222792.6|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr7_-_14029515_14029642	0.0192362	ACAGUAU	ENST00000430479.1|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000405218.2|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000343495.5|ETV1|ENSG00000006468.9|ets variant 1
hg19_v2_chr4_+_38665810_38665827	0.0189369	ACAGUAU	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr4_-_42659102_42659161	0.0187728	ACAGUAU	ENST00000264449.10|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000510289.1|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000381668.5|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
hg19_v2_chr5_-_79287060_79287093	0.0187687	ACAGUAU	ENST00000512560.1|MTX3|ENSG00000177034.10|metaxin 3 	ENST00000509852.1|MTX3|ENSG00000177034.10|metaxin 3 	ENST00000512528.1|MTX3|ENSG00000177034.10|metaxin 3
hg19_v2_chr17_+_5031687_5031687	0.0181649	ACAGUAU	ENST00000250066.6|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene) 	ENST00000304328.5|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene)
hg19_v2_chr10_+_8096631_8096660	0.018017	ACAGUAU	ENST00000379328.3|GATA3|ENSG00000107485.11|GATA binding protein 3
hg19_v2_chr1_+_113933581_113933611	0.0179575	ACAGUAU	ENST00000307546.9|MAGI3|ENSG00000081026.14|membrane associated guanylate kinase, WW and PDZ domain containing 3 	ENST00000369615.1|MAGI3|ENSG00000081026.14|membrane associated guanylate kinase, WW and PDZ domain containing 3 	ENST00000369611.4|MAGI3|ENSG00000081026.14|membrane associated guanylate kinase, WW and PDZ domain containing 3
hg19_v2_chr12_-_31744031_31744059	0.0178116	ACAGUAU	ENST00000389082.5|DENND5B|ENSG00000170456.10|DENN/MADD domain containing 5B
hg19_v2_chr18_-_9614515_9614583	0.017632	ACAGUAU	ENST00000400556.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1 	ENST00000400555.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1
hg19_v2_chr4_-_125633876_125633897	0.0176032	ACAGUAU	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chr15_+_84322827_84322861	0.017539	ACAGUAU	ENST00000286744.5|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3 	ENST00000567476.1|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3
hg19_v2_chr6_-_52926539_52926668	0.0174492	ACAGUAU	ENST00000350082.5|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase 	ENST00000356971.3|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase
hg19_v2_chr15_-_77363513_77363570	0.0171963	ACAGUAU	ENST00000267970.4|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chr3_-_15901278_15901354	0.0168516	ACAGUAU	ENST00000399451.2|ANKRD28|ENSG00000206560.6|ankyrin repeat domain 28
hg19_v2_chr10_-_99393242_99393344	0.0165978	ACAGUAU	ENST00000370635.3|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000478953.1|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000335628.3|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr13_-_77460525_77460548	0.016514	ACAGUAU	ENST00000377474.2|KCTD12|ENSG00000178695.4|potassium channel tetramerization domain containing 12 	ENST00000317765.2|KCTD12|ENSG00000178695.4|potassium channel tetramerization domain containing 12
hg19_v2_chr2_+_159825143_159825190	0.0163097	ACAGUAU	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr15_-_34502278_34502318	0.0162092	ACAGUAU	ENST00000559515.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000256544.3|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000560108.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000559462.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1
hg19_v2_chr9_-_99180597_99180614	0.0161812	ACAGUAU	ENST00000375256.4|ZNF367|ENSG00000165244.6|zinc finger protein 367
hg19_v2_chr12_+_62860581_62860629	0.0159916	ACAGUAU	ENST00000393632.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393630.3|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000280379.6|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000546600.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552738.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393629.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552115.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae)
hg19_v2_chr17_+_57232690_57232860	0.0158572	ACAGUAU	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr17_+_2496971_2497040	0.015247	ACAGUAU	ENST00000397195.5|PAFAH1B1|ENSG00000007168.8|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)
hg19_v2_chr17_-_38821373_38821440	0.0149686	ACAGUAU	ENST00000394052.3|KRT222|ENSG00000213424.4|keratin 222
hg19_v2_chr1_-_19283163_19283180	0.0148298	ACAGUAU	ENST00000455833.2|IFFO2|ENSG00000169991.6|intermediate filament family orphan 2
hg19_v2_chr18_+_29598335_29598428	0.014776	ACAGUAU	ENST00000217740.3|RNF125|ENSG00000101695.4|ring finger protein 125, E3 ubiquitin protein ligase
hg19_v2_chr4_+_41362796_41362841	0.014744	ACAGUAU	ENST00000508501.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512946.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000313860.7|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512632.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512820.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr6_+_53659746_53659817	0.0147131	ACAGUAU	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr12_+_14518598_14518663	0.0146531	ACAGUAU	ENST00000261168.4|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000538511.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000545723.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000543189.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536444.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr1_+_82266053_82266082	0.0146465	ACAGUAU	ENST00000370715.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370713.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000319517.6|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370717.2|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000394879.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000271029.4|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000335786.5|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr20_+_11871371_11871428	0.0144541	ACAGUAU	ENST00000254977.3|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr1_+_65730385_65730468	0.014268	ACAGUAU	ENST00000263441.7|DNAJC6|ENSG00000116675.11|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENST00000395325.3|DNAJC6|ENSG00000116675.11|DnaJ (Hsp40) homolog, subfamily C, member 6
hg19_v2_chr12_+_94542459_94542513	0.0141243	ACAGUAU	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr3_-_99833333_99833357	0.0140125	ACAGUAU	ENST00000354552.3|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000331335.5|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000398326.2|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like
hg19_v2_chr6_-_132834184_132834337	0.0137936	ACAGUAU	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chrX_+_40944871_40944888	0.0135766	ACAGUAU	ENST00000378308.2|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked 	ENST00000324545.8|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked
hg19_v2_chr12_+_111843749_111843763	0.0132559	ACAGUAU	ENST00000341259.2|SH2B3|ENSG00000111252.6|SH2B adaptor protein 3
hg19_v2_chr22_+_35936915_35936939	0.0130333	ACAGUAU	ENST00000216127.4|RASD2|ENSG00000100302.6|RASD family, member 2
hg19_v2_chr6_+_34857019_34857117	0.0128026	ACAGUAU	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr12_-_51477333_51477426	0.01279	ACAGUAU	ENST00000228515.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000548206.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000546935.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000548981.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2
hg19_v2_chr4_-_66536057_66536071	0.0126289	ACAGUAU	ENST00000273854.3|EPHA5|ENSG00000145242.9|EPH receptor A5
hg19_v2_chr10_+_96162242_96162283	0.0124975	ACAGUAU	ENST00000225235.4|TBC1D12|ENSG00000108239.8|TBC1 domain family, member 12
hg19_v2_chr12_+_13349650_13349667	0.0124701	ACAGUAU	ENST00000256951.5|EMP1|ENSG00000134531.5|epithelial membrane protein 1 	ENST00000431267.2|EMP1|ENSG00000134531.5|epithelial membrane protein 1 	ENST00000542474.1|EMP1|ENSG00000134531.5|epithelial membrane protein 1 	ENST00000544053.1|EMP1|ENSG00000134531.5|epithelial membrane protein 1
hg19_v2_chr12_-_21927736_21927768	0.0124616	ACAGUAU	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr6_+_116421976_116422054	0.0124396	ACAGUAU	ENST00000319550.4|NT5DC1|ENSG00000178425.9|5'-nucleotidase domain containing 1 	ENST00000419791.1|NT5DC1|ENSG00000178425.9|5'-nucleotidase domain containing 1
hg19_v2_chr6_-_111136513_111136525	0.0122556	ACAGUAU	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr14_+_75230011_75230120	0.0119759	ACAGUAU	ENST00000552421.1|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000325680.7|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000238571.3|YLPM1|ENSG00000119596.13|YLP motif containing 1
hg19_v2_chr5_+_149109825_149109907	0.0111262	ACAGUAU	ENST00000360453.4|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000394320.3|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000309241.5|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta
hg19_v2_chr20_+_37434329_37434371	0.0111137	ACAGUAU	ENST00000299824.1|PPP1R16B|ENSG00000101445.5|protein phosphatase 1, regulatory subunit 16B 	ENST00000373331.2|PPP1R16B|ENSG00000101445.5|protein phosphatase 1, regulatory subunit 16B
hg19_v2_chrX_+_44732757_44732860	0.0109009	ACAGUAU	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr2_+_5832799_5832799	0.010693	ACAGUAU	ENST00000322002.3|SOX11|ENSG00000176887.5|SRY (sex determining region Y)-box 11
hg19_v2_chr4_+_72204755_72204778	0.0104642	ACAGUAU	ENST00000512686.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000340595.3|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr1_+_176432298_176432319	0.0103949	ACAGUAU	ENST00000367661.3|PAPPA2|ENSG00000116183.6|pappalysin 2 	ENST00000367662.3|PAPPA2|ENSG00000116183.6|pappalysin 2
hg19_v2_chr10_+_93558069_93558154	0.0102925	ACAGUAU	ENST00000371627.4|TNKS2|ENSG00000107854.5|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
hg19_v2_chr17_-_77813186_77813249	0.00998877	ACAGUAU	ENST00000448310.1|CBX4|ENSG00000141582.10|chromobox homolog 4 	ENST00000269397.4|CBX4|ENSG00000141582.10|chromobox homolog 4
hg19_v2_chrX_-_122866874_122866911	0.00994998	ACAGUAU	ENST00000245838.8|THOC2|ENSG00000125676.15|THO complex 2 	ENST00000355725.4|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chr8_-_38239732_38239796	0.00989121	ACAGUAU	ENST00000534155.1|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000433384.2|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000317025.8|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000316985.3|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1
hg19_v2_chr5_+_71403061_71403169	0.00985548	ACAGUAU	ENST00000512974.1|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B 	ENST00000296755.7|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B
hg19_v2_chr17_-_62207485_62207511	0.00955778	ACAGUAU	ENST00000433197.3|ERN1|ENSG00000178607.11|endoplasmic reticulum to nucleus signaling 1
hg19_v2_chr7_+_65338230_65338293	0.00951688	ACAGUAU	ENST00000360768.3|VKORC1L1|ENSG00000196715.5|vitamin K epoxide reductase complex, subunit 1-like 1
hg19_v2_chr16_-_58663720_58663790	0.009512	ACAGUAU	ENST00000564557.1|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000569240.1|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000441024.2|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000569020.1|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000317147.5|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1
hg19_v2_chr12_-_15942309_15942330	0.00891325	ACAGUAU	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr9_-_98279241_98279339	0.00879815	ACAGUAU	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr3_-_81811312_81811312	0.00857797	ACAGUAU	ENST00000429644.2|GBE1|ENSG00000114480.8|glucan (1,4-alpha-), branching enzyme 1
hg19_v2_chr11_-_88796803_88796827	0.00824689	ACAGUAU	ENST00000418177.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5 	ENST00000455756.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5
hg19_v2_chr5_+_96271141_96271168	0.00805009	ACAGUAU	ENST00000231368.5|LNPEP|ENSG00000113441.11|leucyl/cystinyl aminopeptidase
hg19_v2_chr20_+_32951041_32951067	0.00800514	ACAGUAU	ENST00000374864.4|ITCH|ENSG00000078747.8|itchy E3 ubiquitin protein ligase
hg19_v2_chr9_-_37465396_37465454	0.00794436	ACAGUAU	ENST00000307750.4|ZBTB5|ENSG00000168795.4|zinc finger and BTB domain containing 5
hg19_v2_chr18_-_45663666_45663732	0.00791839	ACAGUAU	ENST00000535628.2|ZBTB7C|ENSG00000184828.5|zinc finger and BTB domain containing 7C
hg19_v2_chr5_-_114598548_114598579	0.00762994	ACAGUAU	ENST00000379615.3|PGGT1B|ENSG00000164219.5|protein geranylgeranyltransferase type I, beta subunit 	ENST00000419445.1|PGGT1B|ENSG00000164219.5|protein geranylgeranyltransferase type I, beta subunit
hg19_v2_chr11_+_120971882_120971882	0.00757011	ACAGUAU	ENST00000392793.1|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr8_+_126442563_126442624	0.00732941	ACAGUAU	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr12_-_26278030_26278060	0.00714175	ACAGUAU	ENST00000242728.4|BHLHE41|ENSG00000123095.5|basic helix-loop-helix family, member e41
hg19_v2_chr3_+_50712672_50712703	0.00706675	ACAGUAU	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr9_+_133454943_133455020	0.00691445	ACAGUAU	ENST00000319725.9|FUBP3|ENSG00000107164.15|far upstream element (FUSE) binding protein 3
hg19_v2_chr8_-_42065187_42065242	0.00678592	ACAGUAU	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chr20_+_60697480_60697583	0.00666009	ACAGUAU	ENST00000370915.1|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000253001.4|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000400318.2|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279068.6|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279069.7|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr2_+_128848881_128848908	0.00645842	ACAGUAU	ENST00000259253.6|UGGT1|ENSG00000136731.8|UDP-glucose glycoprotein glucosyltransferase 1
hg19_v2_chr2_-_114036488_114036527	0.00633114	ACAGUAU	ENST00000263335.7|PAX8|ENSG00000125618.12|paired box 8 	ENST00000397647.3|PAX8|ENSG00000125618.12|paired box 8 	ENST00000348715.5|PAX8|ENSG00000125618.12|paired box 8 	ENST00000429538.3|PAX8|ENSG00000125618.12|paired box 8
hg19_v2_chr16_+_8891670_8891734	0.00601288	ACAGUAU	ENST00000268261.4|PMM2|ENSG00000140650.7|phosphomannomutase 2 	ENST00000539622.1|PMM2|ENSG00000140650.7|phosphomannomutase 2 	ENST00000569958.1|PMM2|ENSG00000140650.7|phosphomannomutase 2 	ENST00000537352.1|PMM2|ENSG00000140650.7|phosphomannomutase 2
hg19_v2_chr8_+_67579807_67579887	0.00579585	ACAGUAU	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr20_-_48729670_48729694	0.00569006	ACAGUAU	ENST00000371657.5|UBE2V1|ENSG00000244687.7|ubiquitin-conjugating enzyme E2 variant 1
hg19_v2_chrX_-_109561294_109561467	0.00564533	ACAGUAU	ENST00000372059.2|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 	ENST00000262844.5|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
hg19_v2_chr14_-_35182994_35183034	0.00540718	ACAGUAU	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr5_-_142783175_142783297	0.00537982	ACAGUAU	ENST00000231509.3|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 	ENST00000394464.2|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
hg19_v2_chr1_-_155532484_155532605	0.00503566	ACAGUAU	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chr6_-_56707943_56708013	0.00494241	ACAGUAU	ENST00000370769.4|DST|ENSG00000151914.13|dystonin 	ENST00000421834.2|DST|ENSG00000151914.13|dystonin 	ENST00000312431.6|DST|ENSG00000151914.13|dystonin 	ENST00000361203.3|DST|ENSG00000151914.13|dystonin 	ENST00000523817.1|DST|ENSG00000151914.13|dystonin
hg19_v2_chr17_-_60142609_60142657	0.00466183	ACAGUAU	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr5_+_153825510_153825529	0.00462573	ACAGUAU	ENST00000297109.6|SAP30L|ENSG00000164576.7|SAP30-like
hg19_v2_chr6_+_135502466_135502489	0.00442847	ACAGUAU	ENST00000367814.4|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr20_-_48532019_48532045	0.00397296	ACAGUAU	ENST00000289431.5|SPATA2|ENSG00000158480.6|spermatogenesis associated 2
hg19_v2_chrX_+_21857717_21857763	0.0034478	ACAGUAU	ENST00000379484.5|MBTPS2|ENSG00000012174.7|membrane-bound transcription factor peptidase, site 2
hg19_v2_chr7_+_8008418_8008443	0.00325474	ACAGUAU	ENST00000223145.5|GLCCI1|ENSG00000106415.8|glucocorticoid induced transcript 1
hg19_v2_chr1_+_100435315_100435345	0.00318368	ACAGUAU	ENST00000370155.3|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 	ENST00000465289.1|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3
hg19_v2_chr10_+_93683519_93683594	0.00304658	ACAGUAU	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr1_+_179262905_179262986	0.00302297	ACAGUAU	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr22_+_19744226_19744226	0.00286	ACAGUAU	ENST00000332710.4|TBX1|ENSG00000184058.8|T-box 1 	ENST00000329705.7|TBX1|ENSG00000184058.8|T-box 1 	ENST00000359500.3|TBX1|ENSG00000184058.8|T-box 1
hg19_v2_chr18_+_13218769_13218792	0.00285723	ACAGUAU	ENST00000399848.3|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4 	ENST00000361205.4|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr1_-_10003372_10003465	0.0027122	ACAGUAU	ENST00000377223.1|LZIC|ENSG00000162441.7|leucine zipper and CTNNBIP1 domain containing 	ENST00000541052.1|LZIC|ENSG00000162441.7|leucine zipper and CTNNBIP1 domain containing 	ENST00000377213.1|LZIC|ENSG00000162441.7|leucine zipper and CTNNBIP1 domain containing
hg19_v2_chr12_+_51985001_51985037	0.00259531	ACAGUAU	ENST00000354534.6|SCN8A|ENSG00000196876.9|sodium channel, voltage gated, type VIII, alpha subunit
hg19_v2_chr2_+_210636697_210636763	0.00223186	ACAGUAU	ENST00000439458.1|UNC80|ENSG00000144406.14|unc-80 homolog (C. elegans) 	ENST00000272845.6|UNC80|ENSG00000144406.14|unc-80 homolog (C. elegans)
hg19_v2_chr8_+_75896731_75896750	0.00215946	ACAGUAU	ENST00000262207.4|CRISPLD1|ENSG00000121005.4|cysteine-rich secretory protein LCCL domain containing 1
hg19_v2_chr10_+_25463951_25463991	0.00202828	ACAGUAU	ENST00000376351.3|GPR158|ENSG00000151025.9|G protein-coupled receptor 158
hg19_v2_chr5_-_147162078_147162106	0.00195313	ACAGUAU	ENST00000507386.1|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2
hg19_v2_chrX_-_54384425_54384495	0.00135328	ACAGUAU	ENST00000375169.3|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3 	ENST00000354646.2|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3
hg19_v2_chr3_-_176914238_176914277	0.00117105	ACAGUAU	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr8_-_13372395_13372429	0.00108992	ACAGUAU	ENST00000276297.4|DLC1|ENSG00000164741.10|deleted in liver cancer 1 	ENST00000511869.1|DLC1|ENSG00000164741.10|deleted in liver cancer 1
hg19_v2_chr16_-_62070305_62070310	0.00106533	ACAGUAU	ENST00000584337.1|CDH8|ENSG00000150394.9|cadherin 8, type 2
hg19_v2_chr8_-_71316021_71316068	0.00102785	ACAGUAU	ENST00000452400.2|NCOA2|ENSG00000140396.8|nuclear receptor coactivator 2
hg19_v2_chr17_+_61627814_61627871	0.000506769	ACAGUAU	ENST00000310827.4|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000431926.1|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000415273.2|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7
hg19_v2_chr2_-_164592497_164592573	0.000366075	ACAGUAU	ENST00000333129.3|FIGN|ENSG00000182263.9|fidgetin 	ENST00000409634.1|FIGN|ENSG00000182263.9|fidgetin
hg19_v2_chr12_-_111021110_111021142	0.000342847	ACAGUAU	ENST00000354300.3|PPTC7|ENSG00000196850.4|PTC7 protein phosphatase homolog (S. cerevisiae)
hg19_v2_chr18_+_905104_905118	7.59555e-05	ACAGUAU	ENST00000579794.1|ADCYAP1|ENSG00000141433.8|adenylate cyclase activating polypeptide 1 (pituitary)
hg19_v2_chr14_+_75745477_75745680	1.48519e-05	ACAGUAU	ENST00000303562.4|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554617.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554212.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000535987.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000555242.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
