hg19_v2_chr19_+_34919257_34919332	0.0174796	AACCUGG	ENST00000246548.4|UBA2|ENSG00000126261.8|ubiquitin-like modifier activating enzyme 2 	ENST00000590048.2|UBA2|ENSG00000126261.8|ubiquitin-like modifier activating enzyme 2
hg19_v2_chr1_+_193091080_193091222	0.0157536	AACCUGG	ENST00000367435.3|CDC73|ENSG00000134371.9|cell division cycle 73
hg19_v2_chr14_-_25519095_25519280	0.014553	AACCUGG	ENST00000419632.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000358326.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000396700.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000548724.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chrX_+_123095155_123095179	0.0128718	AACCUGG	ENST00000371160.1|STAG2|ENSG00000101972.14|stromal antigen 2 	ENST00000435103.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr12_-_123011536_123011547	0.012569	AACCUGG	ENST00000331738.7|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2 	ENST00000354654.2|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2
hg19_v2_chr7_+_77166592_77166653	0.0125049	AACCUGG	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr8_+_94767072_94767105	0.0122481	AACCUGG	ENST00000452276.1|TMEM67|ENSG00000164953.11|transmembrane protein 67 	ENST00000453321.3|TMEM67|ENSG00000164953.11|transmembrane protein 67 	ENST00000498673.1|TMEM67|ENSG00000164953.11|transmembrane protein 67 	ENST00000518319.1|TMEM67|ENSG00000164953.11|transmembrane protein 67
hg19_v2_chr4_+_184020398_184020463	0.0119298	AACCUGG	ENST00000403733.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2 	ENST00000378925.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2
hg19_v2_chr4_-_113437328_113437337	0.0102286	AACCUGG	ENST00000313341.3|NEUROG2|ENSG00000178403.3|neurogenin 2
hg19_v2_chr13_-_41240717_41240735	0.00962515	AACCUGG	ENST00000379561.5|FOXO1|ENSG00000150907.6|forkhead box O1
hg19_v2_chr7_-_26240357_26240377	0.00881132	AACCUGG	ENST00000354667.4|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1 	ENST00000356674.7|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1
hg19_v2_chr2_+_178077477_178077525	0.00865255	AACCUGG	ENST00000411529.2|HNRNPA3|ENSG00000170144.14|heterogeneous nuclear ribonucleoprotein A3 	ENST00000435711.1|HNRNPA3|ENSG00000170144.14|heterogeneous nuclear ribonucleoprotein A3
hg19_v2_chr11_+_76571911_76571991	0.00775622	AACCUGG	ENST00000534206.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3 	ENST00000532485.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3 	ENST00000526597.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3 	ENST00000533873.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3 	ENST00000538157.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3
hg19_v2_chr8_-_17104356_17104395	0.00709293	AACCUGG	ENST00000361272.4|CNOT7|ENSG00000198791.7|CCR4-NOT transcription complex, subunit 7 	ENST00000523917.1|CNOT7|ENSG00000198791.7|CCR4-NOT transcription complex, subunit 7
hg19_v2_chr1_-_247094628_247094726	0.00684942	AACCUGG	ENST00000366508.1|AHCTF1|ENSG00000153207.10|AT hook containing transcription factor 1 	ENST00000326225.3|AHCTF1|ENSG00000153207.10|AT hook containing transcription factor 1 	ENST00000391829.2|AHCTF1|ENSG00000153207.10|AT hook containing transcription factor 1
hg19_v2_chr2_+_148778570_148778589	0.00629467	AACCUGG	ENST00000407073.1|MBD5|ENSG00000204406.7|methyl-CpG binding domain protein 5
hg19_v2_chr17_-_1303462_1303672	0.00568222	AACCUGG	ENST00000573026.1|YWHAE|ENSG00000108953.12|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 	ENST00000575977.1|YWHAE|ENSG00000108953.12|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 	ENST00000571732.1|YWHAE|ENSG00000108953.12|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 	ENST00000264335.8|YWHAE|ENSG00000108953.12|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon
hg19_v2_chrX_-_129402857_129402880	0.00547542	AACCUGG	ENST00000447817.1|ZNF280C|ENSG00000056277.11|zinc finger protein 280C 	ENST00000370978.4|ZNF280C|ENSG00000056277.11|zinc finger protein 280C
hg19_v2_chr5_+_109025067_109025146	0.00547025	AACCUGG	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chr17_-_10600818_10600885	0.00531399	AACCUGG	ENST00000577427.1|SCO1|ENSG00000133028.6|SCO1 cytochrome c oxidase assembly protein 	ENST00000255390.5|SCO1|ENSG00000133028.6|SCO1 cytochrome c oxidase assembly protein
hg19_v2_chr14_+_57735614_57735629	0.00484835	AACCUGG	ENST00000261558.3|AP5M1|ENSG00000053770.7|adaptor-related protein complex 5, mu 1 subunit
hg19_v2_chr4_+_48343339_48343414	0.00465102	AACCUGG	ENST00000264313.6|SLAIN2|ENSG00000109171.10|SLAIN motif family, member 2
hg19_v2_chr9_-_123964114_123964210	0.00394217	AACCUGG	ENST00000373840.4|RAB14|ENSG00000119396.6|RAB14, member RAS oncogene family
hg19_v2_chr7_-_139876812_139876860	0.00386868	AACCUGG	ENST00000397560.2|JHDM1D|ENSG00000006459.6|lysine (K)-specific demethylase 7A
hg19_v2_chr15_-_27018175_27018241	0.00297101	AACCUGG	ENST00000311550.5|GABRB3|ENSG00000166206.9|gamma-aminobutyric acid (GABA) A receptor, beta 3
hg19_v2_chr17_+_30677136_30677205	0.00294475	AACCUGG	ENST00000394670.4|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000321233.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394673.2|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000341711.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000579634.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000580759.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000342555.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000577908.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394679.5|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000582165.1|ZNF207|ENSG00000010244.12|zinc finger protein 207
hg19_v2_chr17_-_48785216_48785291	0.00290619	AACCUGG	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr3_-_189838670_189838718	0.00285431	AACCUGG	ENST00000319332.5|LEPREL1|ENSG00000090530.5|leprecan-like 1
hg19_v2_chr11_-_115375107_115375283	0.00278198	AACCUGG	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr17_-_27621125_27621143	0.00254673	AACCUGG	ENST00000579665.1|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2 	ENST00000225388.4|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2
hg19_v2_chr11_+_125462690_125462768	0.00250764	AACCUGG	ENST00000392708.4|STT3A|ENSG00000134910.8|STT3A, subunit of the oligosaccharyltransferase complex (catalytic) 	ENST00000529196.1|STT3A|ENSG00000134910.8|STT3A, subunit of the oligosaccharyltransferase complex (catalytic) 	ENST00000531491.1|STT3A|ENSG00000134910.8|STT3A, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr1_+_93811438_93811548	0.00239696	AACCUGG	ENST00000370272.4|DR1|ENSG00000117505.8|down-regulator of transcription 1, TBP-binding (negative cofactor 2) 	ENST00000370267.1|DR1|ENSG00000117505.8|down-regulator of transcription 1, TBP-binding (negative cofactor 2)
hg19_v2_chr2_+_210444142_210444194	0.00226529	AACCUGG	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr22_+_25465786_25465936	0.00222506	AACCUGG	ENST00000401395.1|KIAA1671|ENSG00000197077.8|KIAA1671
hg19_v2_chr15_+_52121822_52121833	0.00210977	AACCUGG	ENST00000558455.1|TMOD3|ENSG00000138594.8|tropomodulin 3 (ubiquitous) 	ENST00000308580.7|TMOD3|ENSG00000138594.8|tropomodulin 3 (ubiquitous)
hg19_v2_chr8_-_68255912_68255952	0.00187061	AACCUGG	ENST00000262215.3|ARFGEF1|ENSG00000066777.4|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) 	ENST00000519436.1|ARFGEF1|ENSG00000066777.4|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)
hg19_v2_chr17_-_71228357_71228533	0.00172868	AACCUGG	ENST00000583024.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A 	ENST00000403627.3|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A 	ENST00000405159.3|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A 	ENST00000581110.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A
hg19_v2_chr8_+_41435696_41435734	0.00169642	AACCUGG	ENST00000396987.3|AGPAT6|ENSG00000158669.7|1-acylglycerol-3-phosphate O-acyltransferase 6 	ENST00000519853.1|AGPAT6|ENSG00000158669.7|1-acylglycerol-3-phosphate O-acyltransferase 6
hg19_v2_chr11_+_125439298_125439385	0.00169525	AACCUGG	ENST00000278903.6|EI24|ENSG00000149547.10|etoposide induced 2.4 	ENST00000343678.4|EI24|ENSG00000149547.10|etoposide induced 2.4 	ENST00000524723.1|EI24|ENSG00000149547.10|etoposide induced 2.4 	ENST00000527842.2|EI24|ENSG00000149547.10|etoposide induced 2.4
hg19_v2_chr12_+_67663056_67663067	0.00151446	AACCUGG	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr8_-_93115445_93115462	0.000955842	AACCUGG	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
