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A549 cells infected with IAV Analysis Results (GEO series: GSE147507)

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Results for MSX1

Z-value: 0.38

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Transcription factors associated with MSX1

Gene Symbol Gene ID Gene Info
MSX1
ENSG00000163132.6 msh homeobox 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
MSX1hg19_v2_chr4_+_4861385_4861398-0.752.5e-01Click!

Activity profile of MSX1 motif

Sorted Z-values of MSX1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr6_+_28092338 0.23 ENST00000340487.4
ZSCAN16
zinc finger and SCAN domain containing 16
chr4_+_9446156 0.22 ENST00000334879.1
DEFB131
defensin, beta 131
chr7_+_106415457 0.21 ENST00000490162.2
ENST00000470135.1
RP5-884M6.1
RP5-884M6.1
chr19_-_53662257 0.19 ENST00000599096.1
ENST00000334197.7
ENST00000597183.1
ENST00000601804.1
ENST00000601469.2
ENST00000452676.2
ZNF347
zinc finger protein 347
chr5_-_119669160 0.15 ENST00000514240.1
CTC-552D5.1
CTC-552D5.1
chr2_+_7073174 0.13 ENST00000416587.1
RNF144A
ring finger protein 144A
chr5_-_138739739 0.12 ENST00000514983.1
ENST00000507779.2
ENST00000451821.2
ENST00000450845.2
ENST00000509959.1
ENST00000302091.5
SPATA24
spermatogenesis associated 24
chr8_-_25281747 0.11 ENST00000421054.2
GNRH1
gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
chr14_+_52327350 0.11 ENST00000555472.1
ENST00000556766.1
GNG2
guanine nucleotide binding protein (G protein), gamma 2
chr16_+_53412368 0.11 ENST00000565189.1
RP11-44F14.2
RP11-44F14.2
chr12_-_52604607 0.10 ENST00000551894.1
ENST00000553017.1
C12orf80
chromosome 12 open reading frame 80
chr6_-_32784687 0.09 ENST00000447394.1
ENST00000438763.2
HLA-DOB
major histocompatibility complex, class II, DO beta
chr9_+_130026756 0.09 ENST00000314904.5
ENST00000373387.4
GARNL3
GTPase activating Rap/RanGAP domain-like 3
chr15_+_79166065 0.09 ENST00000559690.1
ENST00000559158.1
MORF4L1
mortality factor 4 like 1
chr10_+_90346519 0.07 ENST00000371939.3
LIPJ
lipase, family member J
chr14_-_92247032 0.07 ENST00000556661.1
ENST00000553676.1
ENST00000554560.1
CATSPERB
catsper channel auxiliary subunit beta
chrX_-_14891150 0.07 ENST00000452869.1
ENST00000398334.1
ENST00000324138.3
FANCB
Fanconi anemia, complementation group B
chr12_+_82752647 0.07 ENST00000550058.1
METTL25
methyltransferase like 25
chr10_+_135050908 0.07 ENST00000325980.9
VENTX
VENT homeobox
chr6_-_76072719 0.07 ENST00000370020.1
FILIP1
filamin A interacting protein 1
chr6_-_150212029 0.07 ENST00000529948.1
ENST00000357183.4
ENST00000367363.3
RAET1E
retinoic acid early transcript 1E
chr14_-_64194745 0.06 ENST00000247225.6
SGPP1
sphingosine-1-phosphate phosphatase 1
chr1_-_35450897 0.06 ENST00000373337.3
ZMYM6NB
ZMYM6 neighbor
chr13_-_52733980 0.06 ENST00000339406.3
NEK3
NIMA-related kinase 3
chr1_-_20503917 0.06 ENST00000429261.2
PLA2G2C
phospholipase A2, group IIC
chr14_+_101295638 0.06 ENST00000523671.2
MEG3
maternally expressed 3 (non-protein coding)
chr11_-_11374904 0.06 ENST00000528848.2
CSNK2A3
casein kinase 2, alpha 3 polypeptide
chr7_-_105332084 0.06 ENST00000472195.1
ATXN7L1
ataxin 7-like 1
chr1_+_111415757 0.06 ENST00000429072.2
ENST00000271324.5
CD53
CD53 molecule
chr9_-_75653627 0.06 ENST00000446946.1
ALDH1A1
aldehyde dehydrogenase 1 family, member A1
chr6_+_28249332 0.05 ENST00000259883.3
PGBD1
piggyBac transposable element derived 1
chr9_+_115913222 0.05 ENST00000259392.3
SLC31A2
solute carrier family 31 (copper transporter), member 2
chr14_-_75389975 0.05 ENST00000555647.1
ENST00000557413.1
RPS6KL1
ribosomal protein S6 kinase-like 1
chr15_-_77712429 0.05 ENST00000564328.1
ENST00000558305.1
PEAK1
pseudopodium-enriched atypical kinase 1
chr16_-_9030515 0.05 ENST00000535863.1
ENST00000381886.4
USP7
ubiquitin specific peptidase 7 (herpes virus-associated)
chr18_-_47721447 0.05 ENST00000285039.7
MYO5B
myosin VB
chr3_-_145881432 0.05 ENST00000469350.1
PLOD2
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
chr20_+_52824367 0.05 ENST00000371419.2
PFDN4
prefoldin subunit 4
chr5_-_137475071 0.05 ENST00000265191.2
NME5
NME/NM23 family member 5
chr12_+_27623565 0.05 ENST00000535986.1
SMCO2
single-pass membrane protein with coiled-coil domains 2
chr5_+_67586465 0.05 ENST00000336483.5
PIK3R1
phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
chr8_+_97597148 0.05 ENST00000521590.1
SDC2
syndecan 2
chr11_+_61197572 0.04 ENST00000542074.1
ENST00000534878.1
ENST00000537782.1
ENST00000543265.1
SDHAF2
succinate dehydrogenase complex assembly factor 2
chr10_-_29923893 0.04 ENST00000355867.4
SVIL
supervillin
chr17_-_30228678 0.04 ENST00000261708.4
UTP6
UTP6, small subunit (SSU) processome component, homolog (yeast)
chr15_-_77712477 0.04 ENST00000560626.2
PEAK1
pseudopodium-enriched atypical kinase 1
chr14_+_20215587 0.04 ENST00000331723.1
OR4Q3
olfactory receptor, family 4, subfamily Q, member 3
chr4_+_169013666 0.04 ENST00000359299.3
ANXA10
annexin A10
chr13_-_81801115 0.04 ENST00000567258.1
LINC00564
long intergenic non-protein coding RNA 564
chr7_+_7811992 0.04 ENST00000406829.1
RPA3-AS1
RPA3 antisense RNA 1
chr7_+_99425633 0.04 ENST00000354829.2
ENST00000421837.2
ENST00000417625.1
ENST00000342499.4
ENST00000444905.1
ENST00000415413.1
ENST00000312017.5
ENST00000222382.5
CYP3A43
cytochrome P450, family 3, subfamily A, polypeptide 43
chr5_+_121647386 0.04 ENST00000542191.1
ENST00000506272.1
ENST00000508681.1
ENST00000509154.2
SNCAIP
synuclein, alpha interacting protein
chr10_+_13142225 0.04 ENST00000378747.3
OPTN
optineurin
chr2_+_175352114 0.04 ENST00000444196.1
ENST00000417038.1
ENST00000606406.1
AC010894.3
AC010894.3
chrX_-_103499602 0.04 ENST00000372588.4
ESX1
ESX homeobox 1
chr4_+_113568207 0.03 ENST00000511529.1
LARP7
La ribonucleoprotein domain family, member 7
chr1_+_224370873 0.03 ENST00000323699.4
ENST00000391877.3
DEGS1
delta(4)-desaturase, sphingolipid 1
chr3_-_123339343 0.03 ENST00000578202.1
MYLK
myosin light chain kinase
chr3_+_171561127 0.03 ENST00000334567.5
ENST00000450693.1
TMEM212
transmembrane protein 212
chr6_+_134758827 0.03 ENST00000431422.1
LINC01010
long intergenic non-protein coding RNA 1010
chr15_-_42500351 0.03 ENST00000348544.4
ENST00000318006.5
VPS39
vacuolar protein sorting 39 homolog (S. cerevisiae)
chr10_-_32667660 0.03 ENST00000375110.2
EPC1
enhancer of polycomb homolog 1 (Drosophila)
chr11_+_327171 0.03 ENST00000534483.1
ENST00000524824.1
ENST00000531076.1
RP11-326C3.12
RP11-326C3.12
chr14_+_55494323 0.03 ENST00000339298.2
SOCS4
suppressor of cytokine signaling 4
chr20_+_56964253 0.03 ENST00000395802.3
VAPB
VAMP (vesicle-associated membrane protein)-associated protein B and C
chr6_+_28249299 0.03 ENST00000405948.2
PGBD1
piggyBac transposable element derived 1
chr21_+_39668478 0.03 ENST00000398927.1
KCNJ15
potassium inwardly-rectifying channel, subfamily J, member 15
chr2_+_202098203 0.03 ENST00000450491.1
ENST00000440732.1
ENST00000392258.3
CASP8
caspase 8, apoptosis-related cysteine peptidase
chr11_-_92931098 0.03 ENST00000326402.4
SLC36A4
solute carrier family 36 (proton/amino acid symporter), member 4
chr3_-_93781750 0.03 ENST00000314636.2
DHFRL1
dihydrofolate reductase-like 1
chr11_-_102401469 0.03 ENST00000260227.4
MMP7
matrix metallopeptidase 7 (matrilysin, uterine)
chr2_+_169312350 0.03 ENST00000305747.6
CERS6
ceramide synthase 6
chr14_+_55493920 0.03 ENST00000395472.2
ENST00000555846.1
SOCS4
suppressor of cytokine signaling 4
chr1_-_54405773 0.03 ENST00000371376.1
HSPB11
heat shock protein family B (small), member 11
chr10_-_43892668 0.03 ENST00000544000.1
HNRNPF
heterogeneous nuclear ribonucleoprotein F
chr1_+_158985457 0.03 ENST00000567661.1
ENST00000474473.1
IFI16
interferon, gamma-inducible protein 16
chr15_+_77712993 0.03 ENST00000336216.4
ENST00000381714.3
ENST00000558651.1
HMG20A
high mobility group 20A
chr10_+_13141585 0.03 ENST00000378764.2
OPTN
optineurin
chr9_-_15510287 0.03 ENST00000397519.2
PSIP1
PC4 and SFRS1 interacting protein 1
chr17_-_55162360 0.03 ENST00000576871.1
ENST00000576313.1
RP11-166P13.3
RP11-166P13.3
chr13_-_52733670 0.03 ENST00000550841.1
NEK3
NIMA-related kinase 3
chr12_+_122688090 0.03 ENST00000324189.4
ENST00000546192.1
B3GNT4
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
chr19_+_3762703 0.03 ENST00000589174.1
MRPL54
mitochondrial ribosomal protein L54
chr7_-_92146729 0.03 ENST00000541751.1
PEX1
peroxisomal biogenesis factor 1
chr4_+_119810134 0.03 ENST00000434046.2
SYNPO2
synaptopodin 2
chr18_+_29598335 0.03 ENST00000217740.3
RNF125
ring finger protein 125, E3 ubiquitin protein ligase
chr3_+_108308513 0.03 ENST00000361582.3
DZIP3
DAZ interacting zinc finger protein 3
chrX_+_134654540 0.03 ENST00000370752.4
DDX26B
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
chr14_-_73997901 0.03 ENST00000557603.1
ENST00000556455.1
HEATR4
HEAT repeat containing 4
chr14_+_55595762 0.03 ENST00000254301.9
LGALS3
lectin, galactoside-binding, soluble, 3
chr13_-_88323218 0.03 ENST00000436290.2
ENST00000453832.2
ENST00000606590.1
MIR4500HG
MIR4500 host gene (non-protein coding)
chr8_-_17555164 0.03 ENST00000297488.6
MTUS1
microtubule associated tumor suppressor 1
chr2_-_88927092 0.02 ENST00000303236.3
EIF2AK3
eukaryotic translation initiation factor 2-alpha kinase 3
chr4_-_120243545 0.02 ENST00000274024.3
FABP2
fatty acid binding protein 2, intestinal
chr12_+_106751436 0.02 ENST00000228347.4
POLR3B
polymerase (RNA) III (DNA directed) polypeptide B
chr11_+_12132117 0.02 ENST00000256194.4
MICAL2
microtubule associated monooxygenase, calponin and LIM domain containing 2
chrX_+_23928500 0.02 ENST00000435707.1
CXorf58
chromosome X open reading frame 58
chr20_+_5731027 0.02 ENST00000378979.4
ENST00000303142.6
C20orf196
chromosome 20 open reading frame 196
chr7_+_107220899 0.02 ENST00000379117.2
ENST00000473124.1
BCAP29
B-cell receptor-associated protein 29
chr9_+_79074068 0.02 ENST00000444201.2
ENST00000376730.4
GCNT1
glucosaminyl (N-acetyl) transferase 1, core 2
chr12_+_48592134 0.02 ENST00000595310.1
DKFZP779L1853
DKFZP779L1853
chr5_-_75919253 0.02 ENST00000296641.4
F2RL2
coagulation factor II (thrombin) receptor-like 2
chr12_+_56324756 0.02 ENST00000331886.5
ENST00000555090.1
DGKA
diacylglycerol kinase, alpha 80kDa
chr4_+_119809984 0.02 ENST00000307142.4
ENST00000448416.2
ENST00000429713.2
SYNPO2
synaptopodin 2
chr1_+_76540386 0.02 ENST00000328299.3
ST6GALNAC3
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
chr9_+_90112117 0.02 ENST00000358077.5
DAPK1
death-associated protein kinase 1
chr1_+_84630574 0.02 ENST00000413538.1
ENST00000417530.1
PRKACB
protein kinase, cAMP-dependent, catalytic, beta
chr7_-_32338917 0.02 ENST00000396193.1
PDE1C
phosphodiesterase 1C, calmodulin-dependent 70kDa
chr5_+_82767583 0.02 ENST00000512590.2
ENST00000513960.1
ENST00000513984.1
ENST00000502527.2
VCAN
versican
chr14_+_31046959 0.02 ENST00000547532.1
ENST00000555429.1
G2E3
G2/M-phase specific E3 ubiquitin protein ligase
chr17_-_48785216 0.02 ENST00000285243.6
ANKRD40
ankyrin repeat domain 40
chr1_+_8021954 0.02 ENST00000377491.1
ENST00000377488.1
PARK7
parkinson protein 7
chr5_+_82767487 0.02 ENST00000343200.5
ENST00000342785.4
VCAN
versican
chr3_-_190040223 0.02 ENST00000295522.3
CLDN1
claudin 1
chr10_-_61899124 0.02 ENST00000373815.1
ANK3
ankyrin 3, node of Ranvier (ankyrin G)
chr7_+_133615169 0.02 ENST00000541309.1
EXOC4
exocyst complex component 4
chr20_+_5731083 0.02 ENST00000445603.1
ENST00000442185.1
C20orf196
chromosome 20 open reading frame 196
chrX_+_73164149 0.01 ENST00000602938.1
ENST00000602294.1
ENST00000602920.1
ENST00000602737.1
ENST00000602772.1
JPX
JPX transcript, XIST activator (non-protein coding)
chr7_+_16793160 0.01 ENST00000262067.4
TSPAN13
tetraspanin 13
chr18_+_61637159 0.01 ENST00000397985.2
ENST00000353706.2
ENST00000542677.1
ENST00000397988.3
ENST00000448851.1
SERPINB8
serpin peptidase inhibitor, clade B (ovalbumin), member 8
chr17_+_55162453 0.01 ENST00000575322.1
ENST00000337714.3
ENST00000314126.3
AKAP1
A kinase (PRKA) anchor protein 1
chr21_+_17792672 0.01 ENST00000602620.1
LINC00478
long intergenic non-protein coding RNA 478
chr14_-_75389925 0.01 ENST00000556776.1
RPS6KL1
ribosomal protein S6 kinase-like 1
chr16_-_71518504 0.01 ENST00000565100.2
ZNF19
zinc finger protein 19
chr5_+_82767284 0.01 ENST00000265077.3
VCAN
versican
chr1_+_160160346 0.01 ENST00000368078.3
CASQ1
calsequestrin 1 (fast-twitch, skeletal muscle)
chr4_+_146539415 0.01 ENST00000281317.5
MMAA
methylmalonic aciduria (cobalamin deficiency) cblA type
chr14_+_45464658 0.01 ENST00000555874.1
FAM179B
family with sequence similarity 179, member B
chr8_+_28748765 0.01 ENST00000355231.5
HMBOX1
homeobox containing 1
chr1_-_209792111 0.01 ENST00000455193.1
LAMB3
laminin, beta 3
chr7_+_36450169 0.01 ENST00000428612.1
ANLN
anillin, actin binding protein
chr2_-_109605663 0.01 ENST00000409271.1
ENST00000258443.2
ENST00000376651.1
EDAR
ectodysplasin A receptor
chr1_+_160160283 0.01 ENST00000368079.3
CASQ1
calsequestrin 1 (fast-twitch, skeletal muscle)
chr13_+_49551020 0.01 ENST00000541916.1
FNDC3A
fibronectin type III domain containing 3A
chr2_+_158114051 0.01 ENST00000259056.4
GALNT5
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)
chr2_-_169746878 0.01 ENST00000282074.2
SPC25
SPC25, NDC80 kinetochore complex component
chr18_-_3874271 0.01 ENST00000400149.3
ENST00000400155.1
ENST00000400150.3
DLGAP1
discs, large (Drosophila) homolog-associated protein 1
chr3_+_93781728 0.01 ENST00000314622.4
NSUN3
NOP2/Sun domain family, member 3
chr14_+_68086515 0.01 ENST00000261783.3
ARG2
arginase 2
chr10_+_32873190 0.01 ENST00000375025.4
C10orf68
Homo sapiens coiled-coil domain containing 7 (CCDC7), transcript variant 5, mRNA.
chr12_-_82752565 0.01 ENST00000256151.7
CCDC59
coiled-coil domain containing 59
chr19_+_29456034 0.01 ENST00000589921.1
LINC00906
long intergenic non-protein coding RNA 906
chr3_+_108308559 0.00 ENST00000486815.1
DZIP3
DAZ interacting zinc finger protein 3
chr7_-_16840820 0.00 ENST00000450569.1
AGR2
anterior gradient 2
chr13_+_103459704 0.00 ENST00000602836.1
BIVM-ERCC5
BIVM-ERCC5 readthrough
chr5_+_121465207 0.00 ENST00000296600.4
ZNF474
zinc finger protein 474
chr12_-_10541575 0.00 ENST00000540818.1
KLRK1
killer cell lectin-like receptor subfamily K, member 1
chr9_-_86593238 0.00 ENST00000351839.3
HNRNPK
heterogeneous nuclear ribonucleoprotein K
chr8_-_99057742 0.00 ENST00000521291.1
ENST00000396070.2
ENST00000523172.1
ENST00000287038.3
RPL30
ribosomal protein L30
chr3_-_123512688 0.00 ENST00000475616.1
MYLK
myosin light chain kinase
chr3_+_187957646 0.00 ENST00000457242.1
LPP
LIM domain containing preferred translocation partner in lipoma
chr3_-_123339418 0.00 ENST00000583087.1
MYLK
myosin light chain kinase
chr1_+_210501589 0.00 ENST00000413764.2
ENST00000541565.1
HHAT
hedgehog acyltransferase
chr2_-_136288113 0.00 ENST00000401392.1
ZRANB3
zinc finger, RAN-binding domain containing 3
chr3_+_108308845 0.00 ENST00000479138.1
DZIP3
DAZ interacting zinc finger protein 3
chr6_-_84419101 0.00 ENST00000520302.1
ENST00000520213.1
ENST00000439399.2
ENST00000428679.2
ENST00000437520.1
SNAP91
synaptosomal-associated protein, 91kDa
chr11_+_12766583 0.00 ENST00000361985.2
TEAD1
TEA domain family member 1 (SV40 transcriptional enhancer factor)
chr1_-_167487808 0.00 ENST00000392122.3
CD247
CD247 molecule
chrX_-_122756660 0.00 ENST00000441692.1
THOC2
THO complex 2
chrX_+_1710484 0.00 ENST00000313871.3
ENST00000381261.3
AKAP17A
A kinase (PRKA) anchor protein 17A
chr5_-_75919217 0.00 ENST00000504899.1
F2RL2
coagulation factor II (thrombin) receptor-like 2
chr1_-_109935819 0.00 ENST00000538502.1
SORT1
sortilin 1
chr14_+_52327109 0.00 ENST00000335281.4
GNG2
guanine nucleotide binding protein (G protein), gamma 2

Network of associatons between targets according to the STRING database.

First level regulatory network of MSX1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0002581 negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) regulation of antigen processing and presentation of peptide antigen via MHC class II(GO:0002586)
0.0 0.1 GO:1990637 response to prolactin(GO:1990637) regulation of ovarian follicle development(GO:2000354)
0.0 0.0 GO:0034553 respiratory chain complex II assembly(GO:0034552) mitochondrial respiratory chain complex II assembly(GO:0034553) mitochondrial respiratory chain complex II biogenesis(GO:0097032)
0.0 0.1 GO:0035616 histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.0 0.1 GO:0006668 sphinganine-1-phosphate metabolic process(GO:0006668)
0.0 0.0 GO:0046947 hydroxylysine metabolic process(GO:0046946) hydroxylysine biosynthetic process(GO:0046947)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0098554 cytoplasmic side of endoplasmic reticulum membrane(GO:0098554)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.0 GO:0008475 procollagen-lysine 5-dioxygenase activity(GO:0008475) procollagen glucosyltransferase activity(GO:0033823)
0.0 0.1 GO:0032395 MHC class II receptor activity(GO:0032395)

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME BETA DEFENSINS Genes involved in Beta defensins
0.0 0.1 REACTOME HORMONE LIGAND BINDING RECEPTORS Genes involved in Hormone ligand-binding receptors